Cdea037442.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coleophora deauratella
Gene Symbol
-
Assembly
GCA_958295455.1
Location
OY282415.1:6869733-6885919[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 6.5e-05 0.0075 17.9 1.6 1 23 17 39 17 39 0.99
2 18 0.012 1.4 10.7 1.3 1 23 92 114 92 114 0.96
3 18 0.067 7.7 8.4 0.6 3 23 188 208 186 208 0.98
4 18 0.00016 0.019 16.6 0.1 2 23 213 234 213 234 0.97
5 18 0.41 48 5.9 2.6 2 23 252 274 252 274 0.96
6 18 0.0035 0.41 12.4 2.4 1 23 280 303 280 303 0.98
7 18 2.6 3e+02 3.4 2.8 3 20 311 328 309 331 0.95
8 18 3.6e-07 4.1e-05 25.0 0.4 1 23 337 359 337 359 0.99
9 18 0.35 40 6.1 1.4 1 23 423 446 423 446 0.93
10 18 0.0086 1 11.2 0.2 2 23 470 491 469 491 0.96
11 18 0.031 3.5 9.5 4.8 1 23 513 535 513 535 0.97
12 18 5.7e-05 0.0066 18.1 1.0 1 23 539 561 539 561 0.98
13 18 0.12 14 7.6 0.1 1 23 566 589 566 589 0.95
14 18 0.0002 0.023 16.3 0.8 1 23 595 618 595 618 0.97
15 18 0.026 3 9.7 1.3 1 23 625 648 625 648 0.95
16 18 0.00097 0.11 14.2 1.0 1 23 654 676 654 676 0.95
17 18 9.2e-07 0.00011 23.7 1.0 1 23 682 704 682 704 0.99
18 18 2.9e-07 3.4e-05 25.3 2.6 1 23 710 732 710 733 0.96

Sequence Information

Coding Sequence
ATGGAGGCGCTTAAACTGCATAGAATCAGTCACGGTGGTGATAGAATATTCAAGTGTGACGTCTGTGGCAAGGCGTACGCCCGTCGGAAAACTTTGGTGTGTCACATGCGTATTCACAATAAAGATAAATGGCTGTCTTgGTCCAAATCCCATGAAAAAGAAGATCGAACAGGCGGTTCGGAAACGAAACGCTCGTTCAGTGATTGGAGAAACAACGCACGTATTATTCTTGAGTGCACGAATGGCTTCCCGTTCAGGTGGCAATGTGGTCGATTCTTTTGTGCATTTTGCCGACTCAGTTTTGCACAGTTTGATGAACTTAAAATGCACACCAAAGAACATAAACACAAGCCAAAGAATATTGAAGTACTTCTACGAAGATGCCGCGTGCAGTCACGTGTTAAGGTGGAAATATCTAATTTGCAATGTGAAATTTGTTGTCAACCATTAAAAGATATAGACGATGCACGAAAACATTTGAATGATAACCACATGAAGTATTTTAACGAAGAACATGAAATTGGTCTCATGCCATATTGGATAGTCGGACAAAACTTTGGATGCCCGATGTGTAAAGAGCGTTTTCAGCTTTTCCAACGATTGATTGTACATATGAACAAACATTTTCCTACCAACGTCTGCCCTTACTGCGGCAAGGCGTCTGCGACCAGTTTGCTTTTGCGCAGCCATTTAAAAATACACAACGAAGTCAAAGTATTGAAGAAAGAGAAAAGCAGCGCTCAAAAAATAAGGAAGTGTCAGTTGTGCAATGCACAGTTCAAGGAACACTATCAGAAGATGAATCATCTCCGAGAGGTCCACAATTTTGTGTTAGATTACGTGTGCCATTTGTGTCCGGCGAAGTTTACAACTAACCGATACAGATCTTCGCACATTAAGCGGGTTCACATTCGCGAATTGAAGTTTGGATGCGACCAATGCTCGTATAAATGTATCGGGAAAGAAGCTCTTAAGTTGCACATGGCGTGTCATGGCGGTGAAAGAGTTTTCAAATGCGACGTCTGTGACAAGGGGTTTGCCCGTCGAAAAACACTTGTGGTTCATATGCGTATTCATAATAAAGATAAATGGCTGTCTTgccAACATGACGAAGATGTTCAGATTAAGAGCGAGACGGAATATGAGATGCTGACAGAGTCCGACGACAGAGAGCTTGCGAAGGAGAGGCGAGCCGCATTTAGGAATAACATAGCCATTATCCTAGAGACCTGCACCGCTTACCCATTTAAGTATCGAAAGGGCATTTACCTCTGCTACTTTTGCAAAAGCACTTTCGTTGAACCGGAGAAGTTGAGAGAACACAATAAAAGGCAACATCCCGATCTAAAACACCAGTTCGTCAGACCGAGAAAATATGAACCTCTCAAAATGGATTTTGCAACGACAACATGCAAAATATGTGGTGTTAACATTACAGATTTCGCATCGCTGAAAGTCCATTTAAAAGATCACGGTAAAGTAATAAATTCCGAATATGGTGAAAGTGTGCTACCTTACAAATTAAGCAAAGACGACTATTGCTGTCAGGTATGCGGGAAGCGGTATGAGATGTTTCTTAGTCTCCACAAACATATGAACGATCATTACGAGCATTATATATGTGAAACATGTGGTAAAAGATTTGCGACGTCACAAAGAATGGTCAACCACACGCGCACTCATGAAAAGGGGGAATTCCCGTGCAAGAAGTGTGTCGACACGTTCCCGACGTACGCTGCTTTATATGCTCACGTTGCTAAAGTCCACAGATCAAACAAGAGATACAAATGTCCCATTTGCGATGAGAAGTTCGTTTCGTACAAGCAGAGGTTGAAACATTTAAACAACATTCATGGACAGAACACGGCTGTGTTTCCCTGTCCGTCTTGCCCGAAGGTGTTTGATCTTTGCAGCAGACGAACAGCTCATATTAGGTTCCAACATCTCCAAGAGAGAAATCATGTGTGTGCTGTGTGCGGTATGAAGTTCTTCACAAACTACGAGCTTCAAGAGCATTCAATAAAACATGGAGGGGAACGAATATATCAGTGTGATGTCTGTAAAAAATCCTATGCCAGGTTAAAAACTTTACGCGAACATATGCGTATACATAACAATGATAGACGGTTTGTTTGTCCAGTGTGTGGACAGTCGTTTGTACAGAATTGTAGCCTTAAACAACATATGCGAGTTCACCATCCTGAACCAGTAAAATCTAACGGGTTTTAG
Protein Sequence
MEALKLHRISHGGDRIFKCDVCGKAYARRKTLVCHMRIHNKDKWLSWSKSHEKEDRTGGSETKRSFSDWRNNARIILECTNGFPFRWQCGRFFCAFCRLSFAQFDELKMHTKEHKHKPKNIEVLLRRCRVQSRVKVEISNLQCEICCQPLKDIDDARKHLNDNHMKYFNEEHEIGLMPYWIVGQNFGCPMCKERFQLFQRLIVHMNKHFPTNVCPYCGKASATSLLLRSHLKIHNEVKVLKKEKSSAQKIRKCQLCNAQFKEHYQKMNHLREVHNFVLDYVCHLCPAKFTTNRYRSSHIKRVHIRELKFGCDQCSYKCIGKEALKLHMACHGGERVFKCDVCDKGFARRKTLVVHMRIHNKDKWLSCQHDEDVQIKSETEYEMLTESDDRELAKERRAAFRNNIAIILETCTAYPFKYRKGIYLCYFCKSTFVEPEKLREHNKRQHPDLKHQFVRPRKYEPLKMDFATTTCKICGVNITDFASLKVHLKDHGKVINSEYGESVLPYKLSKDDYCCQVCGKRYEMFLSLHKHMNDHYEHYICETCGKRFATSQRMVNHTRTHEKGEFPCKKCVDTFPTYAALYAHVAKVHRSNKRYKCPICDEKFVSYKQRLKHLNNIHGQNTAVFPCPSCPKVFDLCSRRTAHIRFQHLQERNHVCAVCGMKFFTNYELQEHSIKHGGERIYQCDVCKKSYARLKTLREHMRIHNNDRRFVCPVCGQSFVQNCSLKQHMRVHHPEPVKSNGF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-