Cdea036695.1
Basic Information
- Insect
- Coleophora deauratella
- Gene Symbol
- -
- Assembly
- GCA_958295455.1
- Location
- OY282415.1:494332-499399[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0006 0.069 14.8 1.1 2 21 112 131 111 132 0.93 2 20 1.9 2.2e+02 3.8 0.1 3 23 138 158 136 158 0.94 3 20 0.64 74 5.3 0.8 1 19 163 181 163 183 0.83 4 20 0.00047 0.055 15.2 0.1 3 23 190 210 189 210 0.95 5 20 0.18 21 7.1 6.5 1 20 213 232 213 234 0.93 6 20 0.0073 0.84 11.4 0.6 1 23 251 274 251 274 0.94 7 20 0.00021 0.025 16.3 1.0 1 23 280 302 280 302 0.97 8 20 0.0017 0.2 13.4 0.5 1 23 309 331 309 331 0.99 9 20 0.0035 0.4 12.4 4.2 1 23 337 360 337 360 0.97 10 20 4.3 5e+02 2.7 0.1 1 16 368 383 368 384 0.82 11 20 7.2e-05 0.0083 17.7 2.4 2 22 496 516 495 519 0.89 12 20 2 2.3e+02 3.8 0.1 3 23 523 544 522 544 0.93 13 20 0.0033 0.38 12.5 0.2 3 23 551 572 550 572 0.96 14 20 7.9e-06 0.00091 20.8 0.6 2 23 578 599 577 599 0.97 15 20 0.069 7.9 8.4 1.5 2 20 603 621 603 623 0.94 16 20 0.00098 0.11 14.2 1.5 1 23 649 672 649 672 0.92 17 20 0.0025 0.28 12.9 0.6 1 23 678 700 678 700 0.96 18 20 0.0085 0.98 11.2 0.1 1 23 706 728 706 728 0.97 19 20 0.00098 0.11 14.2 0.4 1 23 734 757 734 757 0.94 20 20 0.0002 0.023 16.4 0.4 1 23 763 786 763 786 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAGGAGCCGGGACTGCCTCCAGGGCTCTGCTGCGGGTGTGCTAGTGCCCTCACATCAGCGATGGCCTTTCGTCAGCTCTGCCTAGAATCCGTCTACCACTGGAGTCAAGCCACTAAGAGCTTGGACCAAATCGAGGACCCGAAAGTCTTCGATCAAACTTATTACATCATCTATAACAGCGAAGAAACTATAGTAATAAAAGATCAAATGACTAAAGTCTCTAGTCCTCAGCAAGCTATGGAGAGATTGGCAGCATCAGTTACCGTTGATATGACGCCAAAAGAACGCAAGCGTGTTAATAAAGCGTCGACGGAACCAAATCATTGTAATTGTCCAGATTGCAAGAAGAATTTCGTTTCTTACAAAGATTTGAATGAACACCTAAAAGGGTCCACAAAGACTGCTTGTTTGCAATGTGGACTGGTTTTAAATGCGAAACTGTACAAAGATCATATGTCTGTTATGCATGGAATTGTATTGTTTTCCTGTGAAAACTGTGACCAaacatttgattgtgttgaaacGCTTCAGTCTCATGTCGATCATCCGAGGTCAAATATCTGTGAAGTGTGCTCTAAAGGATTTGACAATGCGAGAGCTCTTCGAGCACATATGTACGCTCACACCCTATTCCATTGCCCTACGTGCAACGAAAGCTTTGAAAATCGCAAATGCTATAAGCATCATTCCAACCAATGCGCACAACGATCAATCCCTCTCACGCCAAGTGCAAAACCCTCAACATTTATATGCGACCACTGCGGCTCAGAGTATGACAAAAAACCGTCTTTACGCATACACATAATCCAAAAACATTTGAATATCCTACCTTACGTCTGCATGACTTGCGGCAAACGCACATCCACCTTAGCGCATTTAAAATCCCACGAATTAGTTCACGAAATCGAACGGAAAGTTTACACGTGCGAGCTGTGTGAAGCGAAATTTCGGACGGAGCTAGGTTTTCAGTTGCATCAAAGGATCCATACTGGGAACAAGCCGTATATGTGCGATCATTGTGGGGAATGCTTCATATCGTCTTCAAGACGTTTAGATCATATCAAAAGGCGACATAGAAGCGCTAAAGATATGCCTCACGCCTGCGAAGATTGTCCAGCGAGATTCGTTGTTGAAGAAGAGCTGTGCCCTGCCGGACTCTGCCTGTCTTGTTTAACGGCTGTCCTAGCAGCTCACGAGTTCAAATGCCTCGTCAGAAATTCCCATAAACTTTGGCAGAAAGCCGTGGACGCTTTATCCACCGTACCAGATTACCGCAAAACATCAGTCAAGTCCCTTTGTGCCTTCGTCGTCGCAAAAAATGATGAGCTGACAGTCAGAACTATAAAAGAGTACTCGGGAAAACATCCCAAGTTGAATCTCGCGCGGTTTAACGACAAATTACAAAGCTATGATGTAGACAAACGAGATCGCGATACAGTTGTCAGGAAACCTCGAACTCCAAGGACAGGGCCTTCTTGCTCTTGCGATGACTGTGGACTGCGTTTCTCTAGTCCCTACCATTTAAATTTGCATTTGAAAAACAGCGGCCACAAGGAGGCGTGTCGCCATTGTGGTGTTGTTCTTGTGCGTGGGCGGGAAGTAAAGGAACATTTAGCTTCAGTGCACAACGAAAACACTGTTCTGTGTCCGCAATGTCCTTTACTTTTCAACACTCAAATTCAGTTGAAAAAACATGTGAGTTCCGCACATAAAGCTGGAGTTTTAACGTGCAGCGATTGTGGTCGTACATTCCCGCGAAGTGATACGTTCGAAATGCATTATCAGATGCATTCAGTTAGGACGTGTCGGAATTGCGACGCGCAATTTACGAATAGAGCATGTTACAGGCGCCATAGAGCAGAATGCGAGCCCGAAGCTAAACCCAACAAGCACGATATGTCGCGACGTCGACGCTCTAACATTAGAGATCCGGCCCTCTTCATATGCGATTACTGCTCCAAAGAATATCACACACGTGCTCAATTGAAAAACCACATAGTTTGGAAACATATGAACGTCCAACCGTATCAATGCCAGTGGTGTGCGAAAAAGTTTTATACCTCAGCTAGGCTGACTGAGCACACGGTAGTTCATACTAGAGAAAGAAATTTCGCATGCGATCTTTGTGGCGCGCGTCTCGTTACAAAAATGGCGCTTGTTTACCATAGACGAAGGCATACTGGAGAGAGGCCATACGAGTGTCCGGATTGCGGAGAAAAGTTCATTTCTTCTTCTCGACGTTCGGAGCATGCAAAGAGAAACCACGGAAGAGGTTTTATGTTTCAGTGTGAAATGTGCGTTGCGAAATTCGCTCGGAGTCAGGAATTGAGGAAACATGTTAATAAGGCTCATAAAAATGTACAACTTGAAGAAGTTACGTTTAAAGGTGAAGAATTGAAGATACAAAAATACAGTAATTAA
- Protein Sequence
- MEEEPGLPPGLCCGCASALTSAMAFRQLCLESVYHWSQATKSLDQIEDPKVFDQTYYIIYNSEETIVIKDQMTKVSSPQQAMERLAASVTVDMTPKERKRVNKASTEPNHCNCPDCKKNFVSYKDLNEHLKGSTKTACLQCGLVLNAKLYKDHMSVMHGIVLFSCENCDQTFDCVETLQSHVDHPRSNICEVCSKGFDNARALRAHMYAHTLFHCPTCNESFENRKCYKHHSNQCAQRSIPLTPSAKPSTFICDHCGSEYDKKPSLRIHIIQKHLNILPYVCMTCGKRTSTLAHLKSHELVHEIERKVYTCELCEAKFRTELGFQLHQRIHTGNKPYMCDHCGECFISSSRRLDHIKRRHRSAKDMPHACEDCPARFVVEEELCPAGLCLSCLTAVLAAHEFKCLVRNSHKLWQKAVDALSTVPDYRKTSVKSLCAFVVAKNDELTVRTIKEYSGKHPKLNLARFNDKLQSYDVDKRDRDTVVRKPRTPRTGPSCSCDDCGLRFSSPYHLNLHLKNSGHKEACRHCGVVLVRGREVKEHLASVHNENTVLCPQCPLLFNTQIQLKKHVSSAHKAGVLTCSDCGRTFPRSDTFEMHYQMHSVRTCRNCDAQFTNRACYRRHRAECEPEAKPNKHDMSRRRRSNIRDPALFICDYCSKEYHTRAQLKNHIVWKHMNVQPYQCQWCAKKFYTSARLTEHTVVHTRERNFACDLCGARLVTKMALVYHRRRHTGERPYECPDCGEKFISSSRRSEHAKRNHGRGFMFQCEMCVAKFARSQELRKHVNKAHKNVQLEEVTFKGEELKIQKYSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -