Basic Information

Insect: Coleophora deauratella
Gene Symbol: -
Assembly: GCA_958295455.1
Location: OY282415.1:6842406-6844507[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 1.4 1.6e+02 4.2 0.2 3 23 3 24 1 24 0.83

2 19 3.9 4.5e+02 2.9 1.0 2 23 49 71 48 71 0.85

3 19 0.0028 0.33 12.7 0.9 1 23 91 113 91 113 0.95

4 19 1.5e-06 0.00017 23.1 1.1 1 23 117 140 117 140 0.95

5 19 0.11 13 7.7 0.3 3 20 147 164 146 166 0.93

6 19 0.19 22 6.9 3.1 3 23 175 196 173 196 0.91

7 19 0.018 2.1 10.2 0.3 3 23 205 226 203 226 0.94

8 19 0.00048 0.055 15.1 1.2 1 23 231 253 231 253 0.95

9 19 4.9e-05 0.0057 18.3 1.7 1 20 259 278 259 278 0.97

10 19 3.2 3.7e+02 3.1 0.1 2 23 304 326 303 326 0.89

11 19 0.54 62 5.6 0.1 2 23 351 373 350 373 0.95

12 19 0.00014 0.016 16.9 0.8 3 23 397 417 395 417 0.96

13 19 0.00064 0.073 14.8 1.3 1 23 421 444 421 444 0.97

14 19 0.00032 0.037 15.7 0.9 1 21 449 469 449 470 0.95

15 19 0.00037 0.043 15.5 1.1 1 23 477 500 477 500 0.96

16 19 0.00013 0.015 16.9 1.7 1 23 507 530 507 530 0.97

17 19 0.00019 0.022 16.4 4.0 1 23 535 557 535 557 0.98

18 19 0.00026 0.03 16.0 0.3 1 20 563 582 563 585 0.94

19 19 3.2e-05 0.0037 18.8 3.0 2 23 592 613 591 614 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	1.4	1.6e+02	4.2	0.2	3	23	3	24	1	24	0.83
2	19	3.9	4.5e+02	2.9	1.0	2	23	49	71	48	71	0.85
3	19	0.0028	0.33	12.7	0.9	1	23	91	113	91	113	0.95
4	19	1.5e-06	0.00017	23.1	1.1	1	23	117	140	117	140	0.95
5	19	0.11	13	7.7	0.3	3	20	147	164	146	166	0.93
6	19	0.19	22	6.9	3.1	3	23	175	196	173	196	0.91
7	19	0.018	2.1	10.2	0.3	3	23	205	226	203	226	0.94
8	19	0.00048	0.055	15.1	1.2	1	23	231	253	231	253	0.95
9	19	4.9e-05	0.0057	18.3	1.7	1	20	259	278	259	278	0.97
10	19	3.2	3.7e+02	3.1	0.1	2	23	304	326	303	326	0.89
11	19	0.54	62	5.6	0.1	2	23	351	373	350	373	0.95
12	19	0.00014	0.016	16.9	0.8	3	23	397	417	395	417	0.96
13	19	0.00064	0.073	14.8	1.3	1	23	421	444	421	444	0.97
14	19	0.00032	0.037	15.7	0.9	1	21	449	469	449	470	0.95
15	19	0.00037	0.043	15.5	1.1	1	23	477	500	477	500	0.96
16	19	0.00013	0.015	16.9	1.7	1	23	507	530	507	530	0.97
17	19	0.00019	0.022	16.4	4.0	1	23	535	557	535	557	0.98
18	19	0.00026	0.03	16.0	0.3	1	20	563	582	563	585	0.94
19	19	3.2e-05	0.0037	18.8	3.0	2	23	592	613	591	614	0.95

Sequence Information

Coding Sequence: ATGGTTTGCGTCTATTGCTGTGACGGTTTTGACGATCCGGCCGAATTCCGGCAGCATATGAAAGATGAACACCTCGAGTTTAATGTGTCGATGGCGTTCGCTCATCTTAGTGAACTACACCTCAAGGTCGATTGCACAGAGCTAATGTGTCGCATATGCAAACAGCCTTTCGATGACATAGAGTCCTGCGTCAAACATTTGAGCCAATCGCACGAAATAAACCTTGACGGTGATATACCGCTTCAACCGTTTAAAgttaataaagataaatatgcATGCTCGATATGCGGATCAAAATCATACAGTTTGCGTCAGCTGAGTAGACACACACAAACTCATTTTCTCAAATTCACATGCGACTTATGTGGTAAATCTTACTCGTCGTCGACGTCTCTTAAAGCCCACATTAAATTCTCACACGTAGGCAATGCCCGAATATGTAGAAAATGTAAACAGACCTTTAGTTCATTGGAGGCTAAGAGGCTTCACATGGACGAAAGTACGAAATGTTGGCAGCATCTGTGTCACGTTTGTCATGGGAGATTTAAGACGTGGAATTTGAAACAGGCGCATTTGATTGAAGCTCATGATCAGCCCAAGAAGACGATCAACTGTCTAGAATGTTCGGAAGAGTTTGTAGACAAAAGGAAGTATAGGGCGCACTTCAATATGGCGCATACAGACAATAACTACATTTGCACTTGTTGCGGTAAAATATTTGCACAGAAACGCGATTTGAACGATCACCAAGTGATGCATACGAAAGAGAAACTTTTCCCTTGCACTTTTTGTTCAAAATCTTTTTCAAGAAAGAAAAATTTGGACCAGCATATGTGGGTGCGACGGAATGCTCGACTTATAATAGAATGCTCGACAGCATACCCGTTCAAGCTGCCAGAAGACGCACAAGTTTGTGTCTACTGCTACGATCGTTTAGAAGACCCGGCGATGTTCCGTAAACACATGGATGAAGAACACTCAATTTTCAAGGTGGAAATAGCGTTCGCCCATGTCTGTGAGGGATTCTTGAAAGTAGACATAACAGAATTGCGATGTCGTTTGTGCTTGGAGCAATATATAACTTTAGAAGAAATGACAGAACATTTAAATTCTGTTCACGATTTGGGTATCAAAGTTGAATACGATTTGGGTTTACAGCCCTTTATTTTGGAGAAATCCAAATGGGATTGTGCTATTTGCAATGAAAGATTTACCAATTTGCGCTCACTGAGCAGGCATACCCAGAAACATTTTGTTAGATTTACATGTGACACTTGCGGCAATTCGTATGTTACCATCACTTCTCTGAAACATCATATCGCGAGGAATCACAATGTAGCAAAGTATGTCTGCAGGAAGTGCAAGAAACCCTTCAACCATGTAACAGAACTGAAGGAGCACATGCTTAGCTCGAAGCGTTGTTTGATGCACGTATGTAACGTTTGCAACGACAGGTTCTACACGTGGTCCAACAAACAAGCACACATGAGAGAGGTACACGGCGCGCTTGAAAAGTCTTACGAATGTCAAGAATGCAACGCTGTTTTCACCAAGCGTAGCTCGTATAGAAATCATTTCAAGATAACACACACCGATGAAAACTTCCAATGTTCTTGTTGTGGACGAAGGTTTGAAACTAAATACAAGTTGGCTAGACATATGGTCACACATACGGGGGAGAAGGAGTTCGAATGTGAGGTGTGCTTGAAGCGGTTCCCCAGAAAGTCTACCCTCGACCAACACATGTGGATACATATGGCGATAAAAAAATGGCAATGCGAAACATGCGATAAACAATTCAATCAGAAAGTTAGTTGGAAGACGCATATGAAATCCCATCACCCTGAACTTTGTGACTTTTAG
Protein Sequence: MVCVYCCDGFDDPAEFRQHMKDEHLEFNVSMAFAHLSELHLKVDCTELMCRICKQPFDDIESCVKHLSQSHEINLDGDIPLQPFKVNKDKYACSICGSKSYSLRQLSRHTQTHFLKFTCDLCGKSYSSSTSLKAHIKFSHVGNARICRKCKQTFSSLEAKRLHMDESTKCWQHLCHVCHGRFKTWNLKQAHLIEAHDQPKKTINCLECSEEFVDKRKYRAHFNMAHTDNNYICTCCGKIFAQKRDLNDHQVMHTKEKLFPCTFCSKSFSRKKNLDQHMWVRRNARLIIECSTAYPFKLPEDAQVCVYCYDRLEDPAMFRKHMDEEHSIFKVEIAFAHVCEGFLKVDITELRCRLCLEQYITLEEMTEHLNSVHDLGIKVEYDLGLQPFILEKSKWDCAICNERFTNLRSLSRHTQKHFVRFTCDTCGNSYVTITSLKHHIARNHNVAKYVCRKCKKPFNHVTELKEHMLSSKRCLMHVCNVCNDRFYTWSNKQAHMREVHGALEKSYECQECNAVFTKRSSYRNHFKITHTDENFQCSCCGRRFETKYKLARHMVTHTGEKEFECEVCLKRFPRKSTLDQHMWIHMAIKKWQCETCDKQFNQKVSWKTHMKSHHPELCDF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -