Cdea025857.1
Basic Information
- Insect
- Coleophora deauratella
- Gene Symbol
- -
- Assembly
- GCA_958295455.1
- Location
- OY282403.1:8666236-8670194[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.6 1.9e+02 4.0 1.1 1 23 141 163 141 163 0.91 2 13 8.6e-07 9.9e-05 23.8 1.0 2 23 174 195 173 195 0.96 3 13 0.044 5 9.0 8.2 1 23 201 223 201 224 0.94 4 13 0.00017 0.02 16.5 1.8 1 23 244 266 244 266 0.98 5 13 0.00047 0.054 15.2 0.8 3 23 275 295 273 295 0.95 6 13 1e-05 0.0012 20.4 0.3 1 23 301 323 301 323 0.98 7 13 7e-05 0.0081 17.8 0.4 1 23 329 351 329 351 0.98 8 13 1e-06 0.00012 23.6 0.8 1 23 357 379 357 379 0.96 9 13 2.4e-06 0.00028 22.4 1.2 1 23 385 407 385 407 0.98 10 13 2.4e-05 0.0027 19.3 1.4 1 23 413 435 413 435 0.97 11 13 0.00015 0.017 16.8 6.8 1 23 441 463 441 463 0.98 12 13 1.6e-05 0.0018 19.8 2.8 1 21 469 489 469 491 0.95 13 13 2.9e-05 0.0034 19.0 2.5 1 23 497 519 497 519 0.97
Sequence Information
- Coding Sequence
- ATGGCTACTGTTTCGTCGAGTAAGAACGTTCAAAGTTGCTGCAGAACTTGCTTGAATGATGTATCGAATAAAATGTATGATATTTTTACGGAAACCTGTAGTTCTGGGAGTATTGCTGAGATACTGAGTCTTTGCACGTCGATAAAGGTTGGAAAGGATGATCATCTACCTCAAAAATTATGTGGGAGTTGTTACAATAGTCTTGTTAGTTTCTATGACTTTAGAATACTGGCAGAAAGCATTGATGCCAGGTTGAGATGCCAACTGgaagaagataaaaataatttaaatgacaACAAAGTATTCATCAAAACTGAACCTGAGAATTCATTTGATTgtgatatttttaacaataacaGCTGTATGTCCGATGGATTTATTAAAGAAGAGAAATTTTCATACAATCAGGGAAATGAGAACTTCTACTGCAATATCTGTGCATTGTATTTTGAGAGTCTGCCGGCTTTCCAAGAGCACTGTGAAACACATTCAGAACCCAAAGATATAAATTGTGAATTGAAATGCCCAATTTGCAATAAAAAGTTCAAAACACTTTCACAGCTGGAACAACACTTAGTAAAGCACAATTCCAATGAACGACACACATGCCATATTTGTTCAAAATCATATAAACAAcgttttaaatatgttgaaCACTTAGTAAAACATCATGCTAAAAGTGAAAATGAATTTCTAGAAATTAATCAAAATGTGACTAATTCTTCAAAATTTGTGTGTGAGGTGTGCTCTGCCTGTTTTCAATCATCATATTCTCTTTCGGGACACATGAGAAAACATACCCAGAAGGGCAGAATACTGGCTTGTTCTGTGTGTGGAAAGGTTTTTCAAAAGATTAGCCATGTTAAAAGGCATGAACTGTCCCATGAAGTGAATCGTCCATACAAATGCAATCTGTGTCCAAAACGCTTTAACACTGAGGCTCTACTTGAAGAGCACTCTAGAATACATGAAGGAATTAAACCATACATTTGTCCAGTCTGTTCAAAGTTGTTTGAACATTTGTCAGCACTTAATACTCATGTGAAAATACATACTAGAGATAAACCATTTCTGTGTCCCACTTGTGGGAAGAGATTTGATTCAAACACAAATTTGAATGATCATGTAAGAAGGCATTTGGGGCTAAAGTTGTTTGCTTGCACTAAGTGCCCTAGAAAATTTGTTAGTAAAGGCGAGCTAAAGTACCACCTTAGAACTCATACTGGTGAAAGGTTGTTTGCCTGTGAACAGTGCGGTGCGACATTCACAAAACGCTACTCTCTGGAACAACACAAAAAGCGTCATTTGGGGGTGAAGCCACATCAGTGTGATGCATGTCCTATGAGGTTCTCATCAAAACACCACCTGACTCGGCACTACCGCATCCACACCGGCGAGAAGCCTTACAAGTGCGAAATCTGCGACCGAGCCTTCACCCAAAGCAACGATCTCATCAAGCACAAGCGGTGCCACTTAGGAGAAAATTTGTATAAGTGCAAGGAATGCGACGAATCTTTTCGTCTCAAAACCGAATTACGTCATCACGTATCGGAACACTTCATTTCTTCTCACCTCAAGGAGCTAAATATGAATAAACAGAATGGCGAAGTTGATAGAGCTCAAGCGTCTGTGGTAAATGGGGAGGGGAATGATGGTGTGGTTGGGGCGGCAACTAATGGTAACATGCAGAATTCACAAGTGCTAACGTAa
- Protein Sequence
- MATVSSSKNVQSCCRTCLNDVSNKMYDIFTETCSSGSIAEILSLCTSIKVGKDDHLPQKLCGSCYNSLVSFYDFRILAESIDARLRCQLEEDKNNLNDNKVFIKTEPENSFDCDIFNNNSCMSDGFIKEEKFSYNQGNENFYCNICALYFESLPAFQEHCETHSEPKDINCELKCPICNKKFKTLSQLEQHLVKHNSNERHTCHICSKSYKQRFKYVEHLVKHHAKSENEFLEINQNVTNSSKFVCEVCSACFQSSYSLSGHMRKHTQKGRILACSVCGKVFQKISHVKRHELSHEVNRPYKCNLCPKRFNTEALLEEHSRIHEGIKPYICPVCSKLFEHLSALNTHVKIHTRDKPFLCPTCGKRFDSNTNLNDHVRRHLGLKLFACTKCPRKFVSKGELKYHLRTHTGERLFACEQCGATFTKRYSLEQHKKRHLGVKPHQCDACPMRFSSKHHLTRHYRIHTGEKPYKCEICDRAFTQSNDLIKHKRCHLGENLYKCKECDESFRLKTELRHHVSEHFISSHLKELNMNKQNGEVDRAQASVVNGEGNDGVVGAATNGNMQNSQVLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -