Cdea037398.1
Basic Information
- Insect
- Coleophora deauratella
- Gene Symbol
- -
- Assembly
- GCA_958295455.1
- Location
- OY282415.1:6563106-6573963[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00038 0.044 15.5 0.2 1 23 8 30 8 30 0.98 2 18 0.00011 0.012 17.2 1.6 2 23 36 58 35 58 0.94 3 18 0.054 6.3 8.7 0.7 2 23 65 87 64 87 0.96 4 18 3.2e-06 0.00038 22.0 1.1 2 23 94 116 93 116 0.96 5 18 2.8e-06 0.00032 22.2 0.3 1 23 122 144 122 144 0.97 6 18 0.00011 0.013 17.1 2.0 1 23 151 173 151 173 0.99 7 18 0.00014 0.016 16.9 0.6 1 23 179 201 179 202 0.96 8 18 0.019 2.1 10.2 0.1 1 23 297 320 297 320 0.97 9 18 0.16 19 7.2 0.0 2 23 346 368 345 368 0.94 10 18 0.0012 0.14 13.9 1.2 2 21 471 490 470 493 0.89 11 18 0.02 2.3 10.1 0.8 3 23 521 542 520 542 0.95 12 18 0.12 14 7.6 0.2 2 23 565 586 564 586 0.94 13 18 0.4 46 6.0 5.6 1 23 590 613 590 613 0.92 14 18 3.4 3.9e+02 3.0 0.8 2 23 631 653 630 653 0.90 15 18 0.0065 0.75 11.6 0.9 3 23 661 682 659 682 0.93 16 18 1.1e-06 0.00013 23.5 0.6 1 23 688 710 688 710 0.98 17 18 4.6e-06 0.00053 21.5 1.1 1 23 716 738 716 738 0.99 18 18 0.013 1.5 10.6 0.3 1 20 744 763 744 767 0.95
Sequence Information
- Coding Sequence
- ATGAACTCTCACTTCAGACATTATGTATGCAAACTGTGCGACGCGGGGTACATGACACAAGACTCGCTCAATCGACACGAGTTGAGGCACGACTTTACTGAGAGCAAATGTCCTCACTGCGACAAAGTGTTCGCTAGCAAGGAAAGGATGCGACGCCACAACCAAATCGTCCATTTGAAGATAAGGAAAAACAAATGCGCTTACTGCGACGAACGGTTTGAGGAATTCAATCAAAAGCTGAGGCATATGGAGAAGGTTCACATGAAACATTTAACGTTAGAGTGTGACATGTGCAACAAAACATTTATGACGCCCAGGAACTTAAGACTGCACATAAGAAAGAGGCATTTGATGGAAAGGAGATATGCATGCGAAGTGTGCGACAAATCTTTCTTCTCGAGAGGGGAATTGAACAGTCACATGGTTACTCATAACGCTGATAGGCCGATGTACCAATGCGATTCGTGTACCAAGAGCTTTGTGAGGCACAACGCATTTATTGTGCATGCGCGTACCCACACGAGTGACACATGTTATAAATGCGACTTTTGCCCAGCGGCATTTGTGGCCAGTGTGAATTTAAAGAAACATTTGCTGTCGCATCATGGTGGCCCACATCAGCTACAACATCAAACGCTTCAGTACAAATATGAAGAAGAACGGAAGTTTTTACCGAAGAAAGTTAAAGTAACGGCCAAGAAATTCGACGGAGATGTATTAAAATCAACAGTTAAAAGACAAACACTTACCATACAGAAACAACCTACTCCTGCAAATACACTTTTAGTAAACTGTCGTCAAAGAAATAGGTCGAAATGCATTCATAATATTGAAGTGATTCTTGAATATTCAAACGCAACTGTTTTTCGATCTCACAAAGACGACGGTTACGAGTGCGCTTATTGCAGTGTCAGAATGAAAGATCCTGCCGATCTGAAAAATCACACCTTGATGGAACACTGCGAAATTTCCAATGCTTATTTTTACAGAACATGTTTGTCGTATTTTGTGGTAAAGTTGGATATAACAGACTTGCGATGCTCCATTTGTGAAATCACCATCGAATCTCTGGAATCCCTAATGGATCACTTAGCAAGCGCTCACAACAAGACTATTTACACAGACATTAATAATCATATTGTCCCATTCAAGTTCGAAGGAGAGACATTGAAGTGTTGCGTATGTGCGAATCCGTACGGTGGGTCCACAAGAGCTGACGATCCTGATTCGGAAGATTGCAGCGAGTCTAGTAATAACGTGAATGATTATGAAGGTCCTGAAtatgaagaaaaagaaaacccACAATCTATAACACAGATATTGAATAAAGAGAATCTCGGTATCAACTTGACAGAGCTACTCATTAGTTCGAACGTGACTCCTATTCGTCACATTGGCATTTTTGCGTCCAAATGTTCCTACTGTGAAAAAACGTTTACGAAACCAGAAGATGTCAAACAACATTCGTTGTTTGACCACGAGGATATGTTAAAAGAGAAATTCGCGAAATCAATGGAGCGTCATCAGACTTACGTTAAATTAGACGTGACTGCACCGCATTGCAAGATATGCCGTAGTGACTTTGTTAATTTGGAAGAGTTAATTAAACATTTACAGTATGTTCATGGCAAGAAAATCTCCCAAGATATATATAAGGATGTCATGCCCTTCAAATTCGATAGCCAAAGGATCAGCTGCTATTTATGCTCTGCTTTTTACGATTCCTTTTCGATGTTAATCAAACATATGGTTGAACACTATAAAAAATTCTGTTGCAGCAAATGCAATTTAAATTGCACAGGAAATGCTTCTTTGAAAAAACATGAATTACAAAAGCATCGTGAGGATACATCTGCTCCACTGAGAAAAGTATACAAAAGTGTTAGTTGGAGATGTAGTTGTTGCGACATGGAACTGGAGACAAGAGCTAAATTACGTACCCACTTGGCTCAGGTACACAATATTAGTAAGCGCGTCAATTGTCAAGCATGTGAGAAAACGTTCTGCACTTTGACCACACTAAATATACACGTAAAAGCTGTTCATTTAATGGAACGCAATTTCATGTGCACACTGTGTCAAAAACCTTTCCCGAGAAAAGGTGCTCTAAACAGGCATATGTTAAAGCATTCAAATGTTTTCAAATACCAATGTGATCTTTGCCAGAAACTGTTCAAAACAAAGTTCTCGTTAGAGGTGCACATTCGGATACATTTGAATGATCGTAGATTTAAGTGCGAACTCTGTGGGCATGCTTCTGTGCAGAAAGCGACCTGGCAAGCGCATATGTGGTCTAGACATAAAATGACTGTTTAG
- Protein Sequence
- MNSHFRHYVCKLCDAGYMTQDSLNRHELRHDFTESKCPHCDKVFASKERMRRHNQIVHLKIRKNKCAYCDERFEEFNQKLRHMEKVHMKHLTLECDMCNKTFMTPRNLRLHIRKRHLMERRYACEVCDKSFFSRGELNSHMVTHNADRPMYQCDSCTKSFVRHNAFIVHARTHTSDTCYKCDFCPAAFVASVNLKKHLLSHHGGPHQLQHQTLQYKYEEERKFLPKKVKVTAKKFDGDVLKSTVKRQTLTIQKQPTPANTLLVNCRQRNRSKCIHNIEVILEYSNATVFRSHKDDGYECAYCSVRMKDPADLKNHTLMEHCEISNAYFYRTCLSYFVVKLDITDLRCSICEITIESLESLMDHLASAHNKTIYTDINNHIVPFKFEGETLKCCVCANPYGGSTRADDPDSEDCSESSNNVNDYEGPEYEEKENPQSITQILNKENLGINLTELLISSNVTPIRHIGIFASKCSYCEKTFTKPEDVKQHSLFDHEDMLKEKFAKSMERHQTYVKLDVTAPHCKICRSDFVNLEELIKHLQYVHGKKISQDIYKDVMPFKFDSQRISCYLCSAFYDSFSMLIKHMVEHYKKFCCSKCNLNCTGNASLKKHELQKHREDTSAPLRKVYKSVSWRCSCCDMELETRAKLRTHLAQVHNISKRVNCQACEKTFCTLTTLNIHVKAVHLMERNFMCTLCQKPFPRKGALNRHMLKHSNVFKYQCDLCQKLFKTKFSLEVHIRIHLNDRRFKCELCGHASVQKATWQAHMWSRHKMTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -