Cdea026404.1
Basic Information
- Insect
- Coleophora deauratella
- Gene Symbol
- -
- Assembly
- GCA_958295455.1
- Location
- OY282404.1:587547-589463[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.015 1.7 10.4 3.2 1 23 138 160 138 160 0.98 2 13 7.9e-05 0.0092 17.6 5.5 2 23 167 189 166 189 0.92 3 13 0.0002 0.023 16.3 1.2 1 23 195 217 195 217 0.96 4 13 1.3e-08 1.5e-06 29.5 2.6 1 23 223 245 223 245 0.98 5 13 0.00035 0.04 15.6 2.0 1 23 251 273 251 273 0.97 6 13 2.1e-06 0.00025 22.6 3.0 1 23 279 301 279 301 0.97 7 13 5.8e-05 0.0066 18.0 1.8 1 23 307 330 307 330 0.97 8 13 0.013 1.5 10.7 0.4 3 23 405 424 404 424 0.97 9 13 3.3e-05 0.0038 18.8 1.4 1 23 430 453 430 453 0.96 10 13 9.2e-07 0.00011 23.7 2.7 1 23 459 481 459 481 0.98 11 13 1e-05 0.0012 20.4 0.9 1 23 487 509 487 509 0.98 12 13 3.5e-05 0.0041 18.7 0.3 1 23 515 537 515 537 0.97 13 13 0.0017 0.19 13.4 2.3 5 23 546 564 543 564 0.96
Sequence Information
- Coding Sequence
- ATGCAACCCGCTACAGACGAATCCACTGAGCGGATAGAAATAAGAGAATTAATAAATACAAGAGTCTCACTCAAGCTGGAACTGGATGACCCGGACGAAATCACGGAAGAGGACGATGAGCCTCTTTCAGCGATAGCCACCAGAAAAACGGCAGATCTGTACAATAATTTCTATAACGCACTCCTTAATTTTAGAAATCATTTCGCAACCGATCACAAAAGTGGAGAGAATTCACCTGACTTCTCAGACTCGAGCGACTCCGAAGCCGTGACGGATGACAACGAACCGTATAATCACGATATAGGTATAGACAAATATGATGATTTAACTAACATGAGAAAAACCGCCTTAGACGAGGAGACACGCGTGGAGTTGAACGAAGTCCGAGTGAAAATTAATGGGAAAGTCTGTTACATCTGCAAAATGTGTGGCAAACACCTGAGCTCCCCGTACACTTACATCTTTCACAAGCGGACGCACACGGGCGAGCGGCCCTGCGTGTGCCACAAGTGCGGCAAGCAGTTCACGTCGCCCAGTGGACTGCACCGCCACCTCACCGAGACCCACGACAAAGTCCGCCGCCACGCGTGCCGGTTCTGCCCTAAATCCTTCATGAACATCGGCACTTTCAACGCGCACATGCGAATCCACACGGGGGAAAAGCCTTTCGTGTGCCCGCACTGCGGAAAACGATTCACCCAGAGCAGTACTCTGCGCGTCCATCTGAAAACGCACAGCGAGCAATTCCCTTTCCATTGCGCGGAGTGCGGGGCCAAGTTTAGGCTGAAGTCCGGTCTGTCGCGGCATCGACTGAAGCACTCGGGCGAAAGGCCCCACGTGTGCGGCGACTGCGGCAAGGCCTTCCGGCAGAAACACGAGCTCAACACCCACAGACTGTCGCACTCCGACTCGAAACCGTTCACTTGTCTCGTCTGTGGAGCCACCTTCAGGCAGCGCCGGGCGCTGAGACACCACGCGAAACGGTTGCACGAAAGTGACCAGAGTAGGGACGTGTCGAGTGTGCCGCGAGAGTCCAATTTGGTGGTGTTTAGTCAACTAGGCCAAAAAACACTTAATAGAGAACAGTTAGAAttaataaattcaataaaagtAGAAGAAAACGTACAAGAAAGTAATCAATCGAAAGACAATTTAGAGAAACCGGCGCACCTTACCATTACCATTGGAGAAAACGGCAAAAAAGTTGCAGCCTGTGATATTTGTAAGAAGAATTTTGCGGTCGGTTCGTGGAAACGGCACATGAGATCCCACGCGAAGGACAAACGCTACAGCTGCCACACCTGCGGGCTGGCTTTCCACGACAGCGGTAACCTATCGCGCCACGCCCGCGCCCTGCATGCCAGGCAGCGCCCCTATATCTGCACGGTCTGCCAGAAGACGTTCTCCAGAAAAGGCCATCTGCAAGACCACGTCAAGTCACATTCCGACAACAGAGAATTCATTTGCGACTTTTGTggaaaaacatcgaaatccaGCGCAGCGTTGCGAATGCATCGGCGGACTCACGACAGCGAATATAAGTTCCAATGTATGGAGTGCGGATCTAAGTTTAAAAGGCGCGGAGAATTAACCGCTCACGTCACAGTGCACACTGGAGAAAAGGCTCACTTGTGTGAATGTGGACGCGCGTTTCGACTCAGAAGTCAGCTTACAAAACATTCTAGAATTCACAGTAACATCAGTGGGCGTATCTAG
- Protein Sequence
- MQPATDESTERIEIRELINTRVSLKLELDDPDEITEEDDEPLSAIATRKTADLYNNFYNALLNFRNHFATDHKSGENSPDFSDSSDSEAVTDDNEPYNHDIGIDKYDDLTNMRKTALDEETRVELNEVRVKINGKVCYICKMCGKHLSSPYTYIFHKRTHTGERPCVCHKCGKQFTSPSGLHRHLTETHDKVRRHACRFCPKSFMNIGTFNAHMRIHTGEKPFVCPHCGKRFTQSSTLRVHLKTHSEQFPFHCAECGAKFRLKSGLSRHRLKHSGERPHVCGDCGKAFRQKHELNTHRLSHSDSKPFTCLVCGATFRQRRALRHHAKRLHESDQSRDVSSVPRESNLVVFSQLGQKTLNREQLELINSIKVEENVQESNQSKDNLEKPAHLTITIGENGKKVAACDICKKNFAVGSWKRHMRSHAKDKRYSCHTCGLAFHDSGNLSRHARALHARQRPYICTVCQKTFSRKGHLQDHVKSHSDNREFICDFCGKTSKSSAALRMHRRTHDSEYKFQCMECGSKFKRRGELTAHVTVHTGEKAHLCECGRAFRLRSQLTKHSRIHSNISGRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -