Cdea009412.2
Basic Information
- Insect
- Coleophora deauratella
- Gene Symbol
- -
- Assembly
- GCA_958295455.1
- Location
- OY282391.1:5554718-5566589[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0057 0.66 11.8 1.0 3 23 715 736 714 736 0.96 2 22 0.052 6.1 8.7 0.6 1 22 1127 1148 1127 1148 0.95 3 22 0.00034 0.039 15.6 1.2 2 21 1223 1242 1222 1243 0.93 4 22 0.051 5.9 8.8 0.1 2 23 1251 1273 1250 1273 0.95 5 22 0.071 8.2 8.3 0.5 3 23 1293 1314 1291 1314 0.95 6 22 0.022 2.6 9.9 4.9 1 23 1320 1343 1320 1343 0.96 7 22 0.15 17 7.3 0.0 1 23 1368 1391 1368 1391 0.90 8 22 0.022 2.6 9.9 3.4 1 23 1396 1418 1396 1418 0.97 9 22 0.0045 0.52 12.1 0.2 1 23 1424 1447 1424 1447 0.97 10 22 0.0024 0.28 13.0 1.7 1 23 1460 1482 1460 1482 0.97 11 22 0.00021 0.024 16.3 1.8 1 23 1529 1552 1529 1552 0.97 12 22 0.00021 0.024 16.3 3.2 1 23 1610 1633 1610 1633 0.98 13 22 0.0016 0.18 13.5 2.1 3 23 1661 1682 1659 1682 0.95 14 22 0.0046 0.54 12.0 0.4 2 23 1688 1710 1687 1710 0.96 15 22 0.012 1.4 10.8 0.2 1 21 1755 1775 1755 1776 0.95 16 22 0.0015 0.17 13.6 0.6 1 23 1786 1808 1786 1808 0.93 17 22 0.00013 0.015 16.9 0.3 2 23 1898 1920 1898 1920 0.93 18 22 3.9e-07 4.5e-05 24.9 1.4 3 23 1927 1947 1926 1947 0.98 19 22 0.0016 0.18 13.5 0.6 1 23 1964 1986 1964 1987 0.94 20 22 0.34 40 6.2 0.0 1 23 2008 2030 2008 2030 0.97 21 22 0.015 1.7 10.4 0.3 1 23 2036 2059 2036 2059 0.95 22 22 0.0003 0.035 15.8 0.4 1 23 2068 2091 2068 2091 0.96
Sequence Information
- Coding Sequence
- ATGAATGTGAATTATGCTCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAAATACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCCGTCCTTGCAACGAAAATCAAGGAATGCGTGTCTGTTCAGaTAAAGGAAAATGACGACCTGCCAACTAATGTCTGCAGGAAATGCATGGACAATGTCAACAACTGGCATATTTTTAAGACAGTATGTGAGAGGACACAAAACAAACTGCATTCTCTTATTAAAAAAGATGGCAGCCAACTAGAAGAGGTGAATGTCAAAAGTGAACCTTTGTCAGATGAGGCTTATGATGATGGAGTGGCTATTGATGGCTCTTACTCTGATCCAGAGCAACCCGGGCCAAGCAAATTGCAGCCAGAAGGGCCACCCATCTTGGCATCACTGGGGCTTACACCGAGGAGTGATAAGAAATATGTGGATCCACGAATGGATTGGGACCGTGTTCATACCATACTGGATATGATCCAAGCCGGTGACCCCATTGACTCACTTCAGTCTACAGAAGAGTCTGATACTATACAGCAATCCGATCATGAATCAGATTCAGAAGCAGAACTACTGTCTTTAATTGATAATTATTATGTGAATTGCGATGAAGGCTATCTTTGCAAAAATGACAAAGTCATATCTAAAACACCTCATACTTCTTTGCCTGCTAAAGtaaaaatacaagaaattacAAGGAAACGAAAAGTAAATGAAGACTGCAGTGATCCTAAAGAAGCAtggaaaatgttattttctgaTGACTTGCTAGACTTAATTGTCTCGGCGACTAATGAAAATATACGAAAGAAGGGGAAAAATCTGTCAGATTTGTCAAATGTTAGTGAAGTAAGAACTTTGATTGGGATACTTTATTTCCAAGGAATAATGAGGCCAACTCACCCAACCTTGGTTGATCTCTGGCATGAAGAGTATGGCGTGATGTGCGTCAGAAAAGCAATGAAATATGGCAGATTCAAGTTTCTTCTGGAAAATTTAAGTTTCTTTGACCAAGAGAGTGATATTTCTATGATGGAATTAGATGTTATGAGTCGAATGCGTAAAGTATTCGAAATATTTGCTCTGAACTGTCGTACTGCTTTTGAAGTAAGGAATGAGGTTGCAATAGATGAAATCTTGGTGCCCGTTTATGGCCCATGCCCATTCcgctatgaaataaaaaataaaccattaAAGCGTGGTATTAAAATGGTACTTTTAGTGTGTCCATCTAGTTTCTATGTAAGCAATTTGGATGTCATCACAGACCCTTATTTTGAAGCTAACGAAATAGTAAAGAAGGTTGTTCAGCATTTAAATGGAACTGGAAAGACTGTTATCATGGACAGCTGGTTTACGTCCATCTCACTGATGAATAAGCTTAAAGCTGAGCTTTCTCTATACACCATAGGAGCTTTGAATCCGAACGATGAAATGATACCGCCACTGTTCCAGTACAAGAGCAGAGAGTGTGTCCCATTTATGACTGGATTTGTTAGTGAAGACATAACTATGGCTTCTCATGTGAATTCAAGGTCAAAATGTGTGACTGTTTTAACGAATGAAccgaaattttataaaaaatctaacaGCAAGTACTTTTCTCCAGTGATTGTGTACAAAAGGAGTCAGTCTGCGGTTGAAGTTGTTGATGTGCTGATGCATTACTATACCACGATGCAGTATACTAATGACTGGACACTGTCGTTGTTTTTTACGATGCTGAATATAGCATCCATTAATGCCCAAGTAATATGGAGTTCACATCAAGCTAAGATGACACCGCTACCATCAAGGCGCTCATTCATCAGAGATTTGGCCTTCAGTCTTCTAGAGTATAATGGACCGGTTCAGTATTTAGATGCGGTCCCTAAAACAGCTCCTACAGGAGTGAATGATGTGTCAATTGAAATGGACAAACAAACCAAAAATAGAATACGAAAGAGATGTGTGGGTGTCGAAAGTGAAAAAGATGAAGAGGAAGAGGAGGAGGAAATTACCGAAGAAGCGGCGTACACAAAATCGGCCGCCATGCCCGAGGTGTCCATCACAGTGATGCGACCGACCGGCGAGACGCTGCAGTCAAGGCAGGGCATACAGCAGCTCGCCTCCAAGGACTGCCTCGTCTGCGGCCGTTCCTACCGCTATTCGCACAACGCGCGCCGTCACGAGCTCACTGCGCACTCCTTCGACAGGTATACCAACAAAATAACTAGCAAAAAATCACACTCGCGTCGTACATCCCATTCTCAGATGCAACCCAAACTCAGACCGAACCCGTTCAATCCGAAAGCGAGGCTCATGCCCAACCCTATTAGCCACAAAATGCATTTAATACCTACACCGGTTCCCCATAGAGTGATGCCTCAAAGGGCGGTAGCGCAACCGAAACCGATACCTGTAAAATCAACCAAGACCCCGCAAAATAATTTGCCATATCCACTTCGTATCAAAGCATTGAAGGACCtccaaataaagaaaaaggaaCCCCAAATATTGAAGACCCTTCTTACTACCAAGCCAGAAGTGTTAGTTTCTGAACCTGAAATCTTAAATTCGGCTCCTGAAAGCCCGGAAACTTTGATATCGGAGCCAGAAATTGCATCTTTCCAAGTAGAAGCTATTTTATCAGAGCCGGATGGCTATGATCAGCAGAATGATGTAAATGATAGTGAAATGCACAACAATCCAAGTCAGAACTATGATACGGTGGATATGGCTTCCGATAATGAAATCGAAATAGCCAGGGCTAAAGAATGTGAAGGCACAGCGGAAGAACCCCAGAATGAACAGGAAGAAGACGACAGGGATCACGATGGAAAGGAAATAGACGAAAATCCAGAGGATGAAAAAGAAGAACCTATTGAAGACTATCCGGATGGTGAAAATCATGAAGATAATACTGATAATAAAGTTGAAGATGAAACCAAAGAAGATGAAGATGACCAAGAAGGTATGGAAGACCCAGAAAATGAAAGTCACGAACAGGATCATGAAGCAAATAATGAAGAAAATGAGGAGGATGAAGATGATGCTCCGCCGGTAGAGCTCGCACCGATGGTAGAGTTAAATGAAGACGTGCACACAAATTCTCACAAAAGTGAAATGAATGAAGAGGAGGAGGACTTGGATATAACCGCTGATCCCAACGAAAACGTTGACCCCGACGACAGCATTAAAGAATTAGATCCCGATAAAATATATGTCACTAAAACACAAAGGGACTTTATAGCGAAGTATCGAGATATAAttcaacaaataaatacaaaacgtTGTCTATGCTGTGACAAGGAGCATCCTCGTAGAAAGGCTGTTATTCAACATTTACAGAAGAATGGGCATAAGGTCCCAAAACATACATGCTATAATTGCGTGGTTACTTTTTCACATATTGGAGCTTTGTTGAGCCACATGAGATCTAACTCTTGCACAAACTTGTggaaaattatttataacgAGAATGGAATAACCGATGACTTGGTGCTAGAAAAAGAACCTATAAACACTAAAGCTATGTACAAAGATATCTTGAATGCGAGATCTTACGGGTGCAAGCTTTGTCCAGCAAAGTTCCAGCTGAAACAGTTCATTACTAAGCACATTTTAGACTGTCATGAAGATGGTCAGTCTGCAGTTCCTCTAAATTGCGTTCACTGTGGTAACAGGTTCAAAGATAAGAGCCTTTTGAAGAGGCACGTGCGTAATGCAGAGTGCTTGATATACATATCTTGCGAAATGTGCCCAGAAAAGTTTGGGAATCTACAAGAATTTACCGAACACGCTCTAACAATGCATACTGATAATTTAGACCAGGACAATTCTAACAAATGTGTTGATGGACGTCCTACTGATTGCACAATTTGTGGAAAGAAGAACAGCAGTTATGTTTCTTTAGTAAAGCATTTAAAACTTTATCACGATGAAGATAAACCCCATCACTGCCAACATTGCGATGCTAAGTTCGAGCAAACAAATGATCTTAACAACCATATCTATACAGCACACTCTGATTTGTCGGGTGCACCGATTATGGAACCAGATATGTCTATCATTAAAGAAGAAGCTGAAGAATACCATTATTCTTGTACAGAATGCAATGCTATTTTTGAAACTGTTGACGCCTGGACTGATCACCAAGTGGCCGAACATAACCAAATAGCCCATCATTGTGACCAATGCGAGAAGAAGTTCTTGCGGCCATCGGAGCTAGCGGAGCACAAAAATACTCATTTACGCGTTAAGTTTTACCCATGTAGCGTGTGTCCAAACTCCTACAGTACACCACAAAAGCTATCTGAACATGTACAAAAACTGCATCCGGGAGCAGCTGCTTATGCGTCATCGGATACGGAATTTTTCTGTAACATTTGCATCAGATCATTCAAGAGTCGACAGGCTTATTCAAACCATATGCGTATACATTCAAAAGTACCAACAACGAACAGGAGACCCCAAGACAATAAAGGCTTTCCTCCTCAAATTATTGGGAAATCGATAAAAATGACTAAAATTCAACAAGGGTTTATCTTTAAGCCtaactcaaatgtacctaacGCACCGTACTCGTGCGATATATGTGGGAAAGGATTTATGCACAAGAAGAATATTTGGAAACACAAGAAGGTGTTACATGCTGATCTAGTGAACGACAGGAATGATAGCGAAGAAAACACTATGCATGCCTCCACTGAGGAAGACGAGTACAATGTCGATGAAAACGGGATCGCTCTTTCAACACCGCAGTTTAACAGTTTCAACTTTGCTAACTTCGCCAATAATGCACAACAAATGCAAGCCGAAGTTTATACATGTGACATTTGTTATCAACGGTTTTCATTCAGAGATGGATTGCGAAAACACAAACGTACAAAGCATGGAGTCGTAAATCCTAGTACTGGTAATGGTTCGGAGACTCAAACACAATCGACTGGCGAGAGCAGTAGTTCCCGCTCCAATTGTACTATCTGTAAGATATCATTCACTGATAAAAAATCTTACTACCGCCATAGGAAGAATGTTCACAAGAATACGTCGCAAATGTGTAAAATCTGTGGCAAACCTCTCAGTTCGACACAGGAACTATATGAACATTTGAAATCCACACACGCACGAGAACTTCTAGGATACAATGCAAACCAAGGTTCTAGTAAAACGCAGGATGTGTTAGTACCAGAGGTGGAACTTGACTATGATGGAGATCAAGATTCCGCAGAGCCCAGCATAGACTACCAGGCCAGATACCCTTGTGATACCTGCGGCAAACAGTTTGTCGGACTACTCGCGCTACAAAACCATCAGTGCATAAATCAGATCACATCACAGCCGTCAACGTTCGATTGTGAGATTTGTCATAAGAGCTACACTTCTATCGCCGCCCTGAAGAGTCATCGAGGGTGGCATCTGCGCTCCCCTGATGGAAAAGCTGCTGCTAATAATTCAGGACTTTGGATGCCTCAGCATAAAGTGACCAACAAAGTGAGCAAGCACGAGGTCGTCGACCCCTCGCAACTGGCTCGCGTCCAGCACACCGCGCCCGTCGCCGCTGTTGCCAAACGGCGCCTCCCACCCGAAGTCGAAGTGACCGTCGTCAATCCAAATAAGAAACTGCGCTCCGACGACTCCATCGAAATGGAAAGCCAAAGTATGTCTGGCGTAGCTGAAGATAGATACTGTACAATTTGCGACAAGGAGTTTACGAAGCGAGCGGCGTATCAGCGCCACATGGACGAAGTTCACCAACCCAACTCTGTGTTCTGTCCGGTCTGCGACAAGAGTTTTACTCGAAAGTCGACTTTACTGGTCCATATGAAGAAGCACTATGAAGGCGGCGAGGGTAGCTCGGCGATGGGGCAGGAGGAGGAAGATCATTCGTGTGATGTGTGCGGTGCGCAGTATGATAGCGCGTCTGCACTTCGAGCACATCGTGCGCGCCATCACGGGGATGAATCCGAGCACGAGTCGGAGGAAGAAGCGGGCGGGGCGAGCGCGCCGGGCGAGTTTACGTGCGCGCAATGCGGCGACGGCGTGGCAACACCGCGCGACCTGCTGGCCCATCGCACTATGCACGCCACGCCTACCAAGTACTTCTGCAACATCTGCAAGGTGTACTTCGCGCGCGCGCTCGACCTGTCCGCGCACACGCGCGCGCGCCACTCCGACACCGACAAGAGCGCCATGTTCCCCTGTGCCATGTGCGACCGCTTCTACATGAACAAGAAGAGCTTACAACGCCACATCGAAATGGCTCACTGA
- Protein Sequence
- MNVNYARVCRLCLSSRGEILPIFPTTSSDDSEPPVLATKIKECVSVQIKENDDLPTNVCRKCMDNVNNWHIFKTVCERTQNKLHSLIKKDGSQLEEVNVKSEPLSDEAYDDGVAIDGSYSDPEQPGPSKLQPEGPPILASLGLTPRSDKKYVDPRMDWDRVHTILDMIQAGDPIDSLQSTEESDTIQQSDHESDSEAELLSLIDNYYVNCDEGYLCKNDKVISKTPHTSLPAKVKIQEITRKRKVNEDCSDPKEAWKMLFSDDLLDLIVSATNENIRKKGKNLSDLSNVSEVRTLIGILYFQGIMRPTHPTLVDLWHEEYGVMCVRKAMKYGRFKFLLENLSFFDQESDISMMELDVMSRMRKVFEIFALNCRTAFEVRNEVAIDEILVPVYGPCPFRYEIKNKPLKRGIKMVLLVCPSSFYVSNLDVITDPYFEANEIVKKVVQHLNGTGKTVIMDSWFTSISLMNKLKAELSLYTIGALNPNDEMIPPLFQYKSRECVPFMTGFVSEDITMASHVNSRSKCVTVLTNEPKFYKKSNSKYFSPVIVYKRSQSAVEVVDVLMHYYTTMQYTNDWTLSLFFTMLNIASINAQVIWSSHQAKMTPLPSRRSFIRDLAFSLLEYNGPVQYLDAVPKTAPTGVNDVSIEMDKQTKNRIRKRCVGVESEKDEEEEEEEITEEAAYTKSAAMPEVSITVMRPTGETLQSRQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITSKKSHSRRTSHSQMQPKLRPNPFNPKARLMPNPISHKMHLIPTPVPHRVMPQRAVAQPKPIPVKSTKTPQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEILNSAPESPETLISEPEIASFQVEAILSEPDGYDQQNDVNDSEMHNNPSQNYDTVDMASDNEIEIARAKECEGTAEEPQNEQEEDDRDHDGKEIDENPEDEKEEPIEDYPDGENHEDNTDNKVEDETKEDEDDQEGMEDPENESHEQDHEANNEENEEDEDDAPPVELAPMVELNEDVHTNSHKSEMNEEEEDLDITADPNENVDPDDSIKELDPDKIYVTKTQRDFIAKYRDIIQQINTKRCLCCDKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNSCTNLWKIIYNENGITDDLVLEKEPINTKAMYKDILNARSYGCKLCPAKFQLKQFITKHILDCHEDGQSAVPLNCVHCGNRFKDKSLLKRHVRNAECLIYISCEMCPEKFGNLQEFTEHALTMHTDNLDQDNSNKCVDGRPTDCTICGKKNSSYVSLVKHLKLYHDEDKPHHCQHCDAKFEQTNDLNNHIYTAHSDLSGAPIMEPDMSIIKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCPNSYSTPQKLSEHVQKLHPGAAAYASSDTEFFCNICIRSFKSRQAYSNHMRIHSKVPTTNRRPQDNKGFPPQIIGKSIKMTKIQQGFIFKPNSNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVNDRNDSEENTMHASTEEDEYNVDENGIALSTPQFNSFNFANFANNAQQMQAEVYTCDICYQRFSFRDGLRKHKRTKHGVVNPSTGNGSETQTQSTGESSSSRSNCTICKISFTDKKSYYRHRKNVHKNTSQMCKICGKPLSSTQELYEHLKSTHARELLGYNANQGSSKTQDVLVPEVELDYDGDQDSAEPSIDYQARYPCDTCGKQFVGLLALQNHQCINQITSQPSTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTNKVSKHEVVDPSQLARVQHTAPVAAVAKRRLPPEVEVTVVNPNKKLRSDDSIEMESQSMSGVAEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSAMGQEEEDHSCDVCGAQYDSASALRAHRARHHGDESEHESEEEAGGASAPGEFTCAQCGDGVATPRDLLAHRTMHATPTKYFCNICKVYFARALDLSAHTRARHSDTDKSAMFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -