Cdea037386.1
Basic Information
- Insect
- Coleophora deauratella
- Gene Symbol
- -
- Assembly
- GCA_958295455.1
- Location
- OY282415.1:6457920-6466517[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0015 0.18 13.6 3.2 1 23 25 47 25 47 0.97 2 27 0.014 1.6 10.5 0.6 1 23 122 144 122 144 0.98 3 27 2.7 3.1e+02 3.3 0.0 3 23 173 194 171 194 0.86 4 27 0.0034 0.39 12.5 0.3 2 23 215 237 214 237 0.94 5 27 9.2e-05 0.011 17.4 0.5 1 23 242 265 242 265 0.96 6 27 0.00019 0.022 16.4 2.5 1 23 270 293 270 293 0.96 7 27 0.00089 0.1 14.3 0.4 2 23 296 318 295 318 0.97 8 27 0.02 2.4 10.0 1.9 1 21 324 344 324 345 0.95 9 27 0.0074 0.86 11.4 3.8 1 23 398 421 398 421 0.96 10 27 3.4 3.9e+02 3.0 0.0 3 23 450 471 448 471 0.94 11 27 0.0077 0.89 11.3 0.3 2 23 494 516 493 516 0.96 12 27 1.9e-05 0.0021 19.6 0.3 3 23 523 544 522 544 0.94 13 27 0.0095 1.1 11.1 1.9 2 23 549 571 548 571 0.94 14 27 0.00052 0.06 15.1 2.8 1 23 576 599 576 599 0.97 15 27 1e-05 0.0012 20.4 4.9 1 23 603 626 603 626 0.98 16 27 0.00047 0.055 15.2 0.3 2 23 633 654 632 654 0.96 17 27 0.083 9.6 8.1 0.3 1 10 660 669 660 674 0.88 18 27 0.066 7.6 8.4 0.8 1 23 718 741 718 741 0.95 19 27 3.9 4.6e+02 2.8 1.4 3 23 773 794 771 794 0.92 20 27 0.0059 0.68 11.7 1.4 2 23 816 837 816 838 0.94 21 27 0.0023 0.27 13.0 1.8 1 23 843 866 843 866 0.96 22 27 0.083 9.6 8.1 1.6 1 23 871 894 871 894 0.92 23 27 0.017 2 10.2 1.5 2 23 900 922 899 922 0.92 24 27 7.3e-05 0.0085 17.7 0.6 2 23 930 952 929 952 0.97 25 27 0.00058 0.067 14.9 0.2 2 23 959 980 958 980 0.97 26 27 7e-07 8.1e-05 24.1 0.5 1 23 986 1008 986 1008 0.95 27 27 1.3e-05 0.0014 20.1 2.1 1 23 1014 1037 1014 1037 0.97
Sequence Information
- Coding Sequence
- ATGCTCAGAAGGCGAAACCTGCAGATACTGTTCAACAACACCTCGATTATACCTTTTAAATGGCGTGGAAGTTACATGTGCTTCTACTGTGGGGAAGATTTTGAAAGCCACAAAAAGTTAAGAAAGCATACACAGGCGCATGGCGCATGTTCCGACACCGACCGAGCTCTAAGGCTTGTAAAAGCAGCTGAAGCCGAACTTATTACGTTAGTTACCAGGAAGAAAATTCAAGAGGAAAATAATTTCTTTGCAGATGAAAACCCGCCAGGTCAGTACGACGGCTATACGTGCGAGCAGCGGAGGAAAAACCTGGAAATCTTGTTCAACAACACAACAGTAATGCCATTCAAGTGGCGTGGAAAGTACATTTGTTTCTATTGTGGCTTGAACTACGCAGAGTATCCGGAATTCAAAAAACACACCATGTCACACGGCGCTTGTTCAACTAAAGATTACGCCCTGAAACTAGTAAAAGGAAATTTCATAGAAGTAAAGATAGATATATCTGAAATAATTTGTGATGTCTGCAATGAACCTTTTGGAAGTGTTAATGAAATTATTGATCATCTTATTGGGAAACACAATTTGGAGTACGACAAAGACGTTGACATGTTTTTGCAAGAATATCGCCTGGTTGACTGCCAGTGTTTGGTATGTGGCGAAGTATTTGCGTACTTTGGTTACCTAGTGAATCATGTTAATATTTTTCATCCGGAAAACGCGTTTATCTGTAACGAATGCGGTGCTACGTTTAATAAGAAAAGGGACTTGGCTGCTCATTTCAGGAACAATCATAAGGAGGGCGGATACCCTTGCGATCTGTGTTCACAAACATTTACGACCCGTCAACTTTTGAAAGCGCATCAACACAGCTATCATGTTATCAAGTGCACTATATGTAATGCTGCTTTCCTGTCGCGAGCAACGTTGAAGAAACACATGAAATCTGAACATCCTGATGATGGCGATTACAAATGCGGTTATTGCAACAAAGAGAGTCACTCGAAGCAGGGGCTCAAGCAGCATTTGTCTAAGTGTAAAGTAAAACTGGCAACAGTAGATCAAGCCACAGATCAAGCGATAATTCTCAGAAACTTACCCAAGAGGAAACAGAACGTTGTTCCTATTCGTAAGAACATCATATGTGTATTAAACAATTCGACGGCGATaccttttaaatttttttcaaaatattcttgCTTCCACTGCACGAAACATTACGTGGACTTCGATGAGTTAAAACAGCATACTATAGTGGAGCATCCTGTGTGCGACTTAAAATCTAAAAGCATTAAAAAATGTAAAGGTGAAAGGACAAGTGTGAAAATTGACGTTTCCTCGTTAGCTTGCAAACTGTGCAGTCAGCCCGTAGAGGAGCTGGATGCGTTGATAGACCATCTAATATCAAATCACAACGAGAGTTACGACAAATCTATAAAGGGTTGTTTAGAACCTTACAAGATTATTAAGGACAACTTGCCTTGTCCAGTTTGCAATAGTACGTTCAAATATTTCGGCATATTGCAAAGGCACATGAACTCTCAACACAGTGAGCATAAGAACATATGTGATTTTTGCGGTCGCAGTTtcaaaaacgtttcgaatttgAAAGTACACATAGCTTATACGCACACGGGTGCGGTCGAGTGTGACGTATGCTCGCTAAAATTCAAGAACCAGTGGTGTCTCTCCAGGCACAAGGCGAAACTCCACGACGCGAAGGACTTCAAATGCCCAAAATGTCCAGAAATGTTCCAATCGCAGTATCATAAACAGAAACACTTGATCAAAGTGCACGACGAGggtcacaaatgcaattattgcGGTAGAATGTTTACTAGAAACTCGTTTATGAAGGACCATATTAGGCGAACGCATTTGAAAGAAAAGAATGTACCGTGTTCGGTGTGCAACGAGAAATTCTTCGATAATTATCTGTTGAGGATGCATATGGTGAAACACGAGGGCGATCGGAAGTTTACGTGCACAGTGTGTGGGAAATCTTTCCTCAGGCGAAGTGCAAAATTGAGCACAGTGGAGGACAAATGTAAGAAAATGGAAATGACGCGAAAGCTCTCGATAAAAAGGAGGAATATCGAATTAATACTGCAATACGGGAACGTTACACCGTTCTTATGGAACAAAGGGAAATTCAGTTGCTTTTACTGCAACCAACACGTGAAGGATCCTGCTGTGTTGCGCGAACATACTGCCAAAGTGCACCAATTTGCCAATCTTGAATTGGTCGTCCTTGAAAGGACAAAGAACAATAGAAATAAAGACGCAGCTGTAAAAATTGATGTTACTGGCATATGTTGCAGGCTATGCACTCACGGCGTGAACAGTGTAGATGAACTTATACACCATCTGATAATTGCTCACGACGCGGAATATGATATGAGTGTTCCGAACTGCTTGTTGCCTTTTAAACTTGATAAAGAACCATCCTGTCCCATCTGTAACTTAAAATTCATCTTCTTTGAGTATTTGTTGCGTCATGCAAATAAACACCATCTTTCGCACGAGTATATGTGCGATATTTGCGGCACAAGTTTCCAAGGGgagaaccatctgaggatgcaCAATAGATATTACCACAAAGCTGGCGGTTACAAGTGTCAGCATTGCGATGAAGTTCTGACGACATTATCAAAGAAATTGCTGCACGAAAAGAATGTTCATCTCGCCAATCTTTCGACATGTCCCCACTGCTCGGAAACGTTCAAAAGTCCTTATTTTAAGAAGCTGCATTTAGCTAACGTACACGGCGTCGAAGAAATGAGAATAAAATGTCCGCATTGTCCAAAAGTGTTCCCGCAAGAGAGTATTATGTCACGACATATGAGGAGAGTGCATTTGCGTGAGAAGAACGTCGAATGTGAGATCTGCAAAGAGAAATTCTTTGGTAGCTATGACTTGAAACTGCACATGGCCAGGCATAACGGTGAAAAGAACTACGTATGCAACGTTTGCGGAAAGAAGTTCTCCAAGAAGAGTAATTTGAACAGCCACGCCGTTATACACACGGGAGAAAAGAAATTTGTATGCTCTATATGCAGTAAGGCATTTTCACATTTAGCAAACTTGAAGCTGCATAGGAGGAATCGTCATATGCCGGCGGTTGAACAGGAGGGCATCGTGGATGCGGCGAATGATACACAGATGATAAGAATTGAGTTTATAGGGAATGAGTTAGACGGGACTGAGGTCAGTGGACACTATATACCATAG
- Protein Sequence
- MLRRRNLQILFNNTSIIPFKWRGSYMCFYCGEDFESHKKLRKHTQAHGACSDTDRALRLVKAAEAELITLVTRKKIQEENNFFADENPPGQYDGYTCEQRRKNLEILFNNTTVMPFKWRGKYICFYCGLNYAEYPEFKKHTMSHGACSTKDYALKLVKGNFIEVKIDISEIICDVCNEPFGSVNEIIDHLIGKHNLEYDKDVDMFLQEYRLVDCQCLVCGEVFAYFGYLVNHVNIFHPENAFICNECGATFNKKRDLAAHFRNNHKEGGYPCDLCSQTFTTRQLLKAHQHSYHVIKCTICNAAFLSRATLKKHMKSEHPDDGDYKCGYCNKESHSKQGLKQHLSKCKVKLATVDQATDQAIILRNLPKRKQNVVPIRKNIICVLNNSTAIPFKFFSKYSCFHCTKHYVDFDELKQHTIVEHPVCDLKSKSIKKCKGERTSVKIDVSSLACKLCSQPVEELDALIDHLISNHNESYDKSIKGCLEPYKIIKDNLPCPVCNSTFKYFGILQRHMNSQHSEHKNICDFCGRSFKNVSNLKVHIAYTHTGAVECDVCSLKFKNQWCLSRHKAKLHDAKDFKCPKCPEMFQSQYHKQKHLIKVHDEGHKCNYCGRMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLRMHMVKHEGDRKFTCTVCGKSFLRRSAKLSTVEDKCKKMEMTRKLSIKRRNIELILQYGNVTPFLWNKGKFSCFYCNQHVKDPAVLREHTAKVHQFANLELVVLERTKNNRNKDAAVKIDVTGICCRLCTHGVNSVDELIHHLIIAHDAEYDMSVPNCLLPFKLDKEPSCPICNLKFIFFEYLLRHANKHHLSHEYMCDICGTSFQGENHLRMHNRYYHKAGGYKCQHCDEVLTTLSKKLLHEKNVHLANLSTCPHCSETFKSPYFKKLHLANVHGVEEMRIKCPHCPKVFPQESIMSRHMRRVHLREKNVECEICKEKFFGSYDLKLHMARHNGEKNYVCNVCGKKFSKKSNLNSHAVIHTGEKKFVCSICSKAFSHLANLKLHRRNRHMPAVEQEGIVDAANDTQMIRIEFIGNELDGTEVSGHYIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -