Cdea021673.1
Basic Information
- Insect
- Coleophora deauratella
- Gene Symbol
- -
- Assembly
- GCA_958295455.1
- Location
- OY282400.1:9678691-9680169[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.6e-08 2.2e-05 25.3 0.0 2 42 19 58 18 60 0.88
Sequence Information
- Coding Sequence
- ATGCCACGAAAATATATTCGAGCCATCGGAAAGCGGGCTTACGCTTATTATTCAAAGGAAAAGTTGAATGAAGCCCTACTAGCCATTCGTAATGGTGAAAAACTACGGTCTGTAGCTGAAAAATATGGTGTTCCACGTTCAACACTATCCAGGCATATGAACAACAAAAATACTGGAAAATATGGCCGTCCTCCAGTTTTTTCAGAAGCTGACGAATTAGTTCTAGTTGAGTGTATAGCGGTTGCTGGAGACTGGGGTTTTCCACTTACAAAGCATGATATTCGGTGCCTGGTAAAAGCACACTTGGATCGCAAGGGAGTCACAGAGAgccgatttaaaaataattttcctggCGAAGATTGGGTGAACTGTTTTATCAGAAGGCATCATGGAAGTCTTACATCGCGCCTTAGCCAAAACATAAAAAGGTGCAGAGCTGCTGTCGATGCTGATACGATAAATGAATACTTCGATAATCTCGAAAAGTCACTTAAAAATGTAGAACCTCAGCATATAGTCAACTATGACGAGACGAATTTATGTGACGACCCAAAACGCCAACGTGTTATTGTCCGTAGATCTTGTCGACATCCtgaaaaaattatagattcttCTAAATCCAGCACCTCTGTGATGTTTTCATGCGCTGGAAATGGTCACGTATTGCCCATATACATTAATTATAAAGCCGAACATCTTTACAATACGTGGACCGAAGGAGGACCTTCCGGAACCGTTTACAATAGAACTAAAAGTGGTTGGTTTACTATGGAAACCTTCGAGGATTGGTTCAAAAGCGTTGCCTtgccatattttaaaaagttcgaTAAGAAGCAACACAAGGTTCTGATCGGTGATAATTTAGCGAGCCATATCAGCAACTGGGTAATAACAAAATGTCtcgaagaaaatattaaatttgttcTTTTGCCTGCTAACAGCACTGGTTTGTGCCAACCCCTTGACGTAGCTTTCTTCAAACCCCTTAAAACTAAGTGGAGTCAAGTTTTGCTAAACTGGAAGACCAAAAATCGCGGGGTGATTCCGAAGGATACCTTTCCCCGTCTACTCAAGAAATGTCTAGATGAGATGACTGACAAAATGCAAGATAATGTGAAAGCTGGCTTTAAGGGATCTGGTCTAGTTCCTCTTAACCGTAATGAAGTATTAAAAAGATTGCCAAAAACTGTTGTCTCAACGAGCGCTGAAAATCCTCAAGAATGGGTAGACTCCTTGAAAGAGTATCTCAAAGAAACACGAGCAAAAGAGACGCAACCACAACGTATTATAAAAAAGAAGAGGCTAAATATAAAACCGGGATGTAGCGTGGTCaatacagaaaatgaaaatcctacagaaaaagacaagcaatcagaaaaaaatattgctaagagaaaaactaaaccaaaagagTCCGATCAAGAAACAGATACTGATGCAACTATATCTTTAAGGGATTCAGATGATGAAAAGACTTGA
- Protein Sequence
- MPRKYIRAIGKRAYAYYSKEKLNEALLAIRNGEKLRSVAEKYGVPRSTLSRHMNNKNTGKYGRPPVFSEADELVLVECIAVAGDWGFPLTKHDIRCLVKAHLDRKGVTESRFKNNFPGEDWVNCFIRRHHGSLTSRLSQNIKRCRAAVDADTINEYFDNLEKSLKNVEPQHIVNYDETNLCDDPKRQRVIVRRSCRHPEKIIDSSKSSTSVMFSCAGNGHVLPIYINYKAEHLYNTWTEGGPSGTVYNRTKSGWFTMETFEDWFKSVALPYFKKFDKKQHKVLIGDNLASHISNWVITKCLEENIKFVLLPANSTGLCQPLDVAFFKPLKTKWSQVLLNWKTKNRGVIPKDTFPRLLKKCLDEMTDKMQDNVKAGFKGSGLVPLNRNEVLKRLPKTVVSTSAENPQEWVDSLKEYLKETRAKETQPQRIIKKKRLNIKPGCSVVNTENENPTEKDKQSEKNIAKRKTKPKESDQETDTDATISLRDSDDEKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00355076; iTF_00355080; iTF_00355082;
- 90% Identity
- iTF_00355080; iTF_00355082; iTF_00355084;
- 80% Identity
- -