Cdea022440.1
Basic Information
- Insect
- Coleophora deauratella
- Gene Symbol
- -
- Assembly
- GCA_958295455.1
- Location
- OY282401.1:3628767-3639940[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-09 1.9e-06 28.7 0.0 1 35 11 45 11 50 0.92 2 2 1.4 6.5e+02 1.4 0.0 21 29 351 359 350 360 0.91
Sequence Information
- Coding Sequence
- ATGGCTTCCAAATCAAAACGACAACAATGGGATAGAGATTCCATGAGTATGGCCATTTTAGCCGTACAGGAAGAAAGAATGGGTTACAAGAAAGCATCTAAAACATTCGATGTGCCAAAAACGACGCTGATACGTTTGAGCAAACAAAAAGATAAACCTTTACAAGAGGTGACAAATATAAAACATGGCCGTAAAGCAATTCTTTCAGAAAAATTTGAGACCGATTTAGTGGAATATGTGCTGGAAATGGAAGCATCAGGATTTGGCTTGACACGGAGAGACGTTATGAAGTTAGCGTATCAATTAGctgaaaaaaacaaattgaatcaTGGTTTTTCTTCTGAAAAACAGTCTGCTGGAAAGACATGGTTACGTTTATTCCTCAGAAGACATCCTGAAATCTCTTTTCGTCGTCCTACCGGCACATCGATAGCTAGATTAAAGGGATTTAACAAAGAAGACGtggataatttttttacgttacTAGAAGCGGCAATGGACAAACACCACTATTCTGCTCACAATATTTATAACGTTGACGAAACCGGAATTTCTGTTGTTCCTGCTAAAATGCCGGAAGTATTGGCAAAAAAGGGAAAAAGGCAAATTGCAGCTACTACTTCTGCTGAAAGAGGTTCAACGGTCACTAGCGTAATGTGCATGAATGCCAGTGGCACGTATGTTCCGCCTATGCTGATATTTCCACGCAAACGAGATCATCCACTGTTGATGAAAGGAGCTCCACCTGGCGCAATTCATGCATGTCACCCTTCAGGTTGGATTCAAATCGATCTTTTTACTAAATGGTTTCAACACTTCATAGAGTATGTGAAGCCTTCTGCTTCATCGCCTGTTCTTTTGATATTAGATGGCCATGCTAGCCATACGAGAAACATTGAGCTTATTGATTTGGCTAGGGCAAATAATGTGCAGCTTCTATCATTGCCACCTCATTCAAGCCATAAAATCCAGCCGCTCGATCGCACTTTTATGGgcccatttaaaaaatatttcgcaGAAGAAATTCGACAATGGATGAGAAACAAGGTACAAGCTGCGACACACTATGATATCGCGGAAATATTTGGACTTGCATACATCAAATCGCAGCGTGCCGAACTGGCCATAAATGGATTCCGTGCAACAGGGATTTACCCTATAAATAGAAGTGTCTTTCAAGATCATGATTTTATCGACCTACAGTCACCAAGTGAAGCTAATGTGTCCGAAGCCAAGCACATTTCTACCTCTCAAGCTCCTACAACTTCAAAGGCTCAGCAAATTAATGACGTTTATCCTAATATTTCTCAGCCAACCCATGCAGGAAATTCTGAGGCTCAACCGACTGCTAAAGAAAACGATGAAAGTTTTGGTTCCGACAGAACATTCGTTGAAGAATTGGACTTCAATGACTTAAGCAACGAAAACTCTCATGATTCAGTTTCGATCTTTGCTGCCGAAAAAACAAATGACACTTATTTCACTGTTCCTACTCTAGTGAAATTATGTAATGCAACAATTGCACACTTGCCTAAAGAACGTTTGCGGTCAAGGTATTTGTGCATTGACCACTTCAGTCAAAATTATGTAAGAAATGAAACTGGAACCCGAAAAAGAATCCGCCGATCTGCTATACCAGAACCATATCAGACACCAGAAACTCCAGATCGTTCAAGTGCTCAGTCACCAGCACACGACGTTGTTGATTCTTATGATGAGGCAAACCTCAAGTCCATGTGTGTTTCATACATTACAACCAACGCAGACGTCACGCACGCGTACGCCACGCGTTCGGTCTGCACCTGGCCGGTAAACATAATACTGAATCTTGGGAACAAGTAG
- Protein Sequence
- MASKSKRQQWDRDSMSMAILAVQEERMGYKKASKTFDVPKTTLIRLSKQKDKPLQEVTNIKHGRKAILSEKFETDLVEYVLEMEASGFGLTRRDVMKLAYQLAEKNKLNHGFSSEKQSAGKTWLRLFLRRHPEISFRRPTGTSIARLKGFNKEDVDNFFTLLEAAMDKHHYSAHNIYNVDETGISVVPAKMPEVLAKKGKRQIAATTSAERGSTVTSVMCMNASGTYVPPMLIFPRKRDHPLLMKGAPPGAIHACHPSGWIQIDLFTKWFQHFIEYVKPSASSPVLLILDGHASHTRNIELIDLARANNVQLLSLPPHSSHKIQPLDRTFMGPFKKYFAEEIRQWMRNKVQAATHYDIAEIFGLAYIKSQRAELAINGFRATGIYPINRSVFQDHDFIDLQSPSEANVSEAKHISTSQAPTTSKAQQINDVYPNISQPTHAGNSEAQPTAKENDESFGSDRTFVEELDFNDLSNENSHDSVSIFAAEKTNDTYFTVPTLVKLCNATIAHLPKERLRSRYLCIDHFSQNYVRNETGTRKRIRRSAIPEPYQTPETPDRSSAQSPAHDVVDSYDEANLKSMCVSYITTNADVTHAYATRSVCTWPVNIILNLGNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00355035;
- 90% Identity
- iTF_00355035;
- 80% Identity
- -