Cdea019889.1
Basic Information
- Insect
- Coleophora deauratella
- Gene Symbol
- -
- Assembly
- GCA_958295455.1
- Location
- OY282399.1:800684-812733[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-08 6.8e-06 26.9 0.0 4 39 149 185 146 189 0.87 2 4 8.6e-12 4.1e-09 37.2 0.2 2 39 201 238 200 241 0.93 3 4 5e-14 2.3e-11 44.4 0.2 2 45 256 300 255 300 0.95 4 4 5.5e-16 2.6e-13 50.7 0.0 2 40 308 347 307 349 0.93
Sequence Information
- Coding Sequence
- ATGCCTAGTTACGGCGTTTCTTCAGTAAAATGCGAGCCATTATCAGAAGACGACGACAGCAACTTACATTTTCATCACGACTTTATTAATAATCAGGCGTGTCCTAGAGATGGTGCGCTGGAAGACCTGGCGTTGCCAACGCCGGCGGGGCCCGCTGCCACGCCCGTCTGCGTCAAACAGGAGCCAGCTGAAACCGCCGCTACTTTTGAGACGCTCGAATCTACGCCACGGGGCAACTCCCTTATTCTTATGAAACTCCAGGGCTCCACGTTGCTGGAGCGACACCTGGCGCTCGGTGCGAGGGAGGTGCCACTCTCGGAGGAATTCACTCCTCTGCTCATCGTCAAGGAAGAGCCACTATCTGAAGGAGAACAACACTCCCGAAGCGGTGAGGACAGTACAGAACCGCCAACTAAAGGGAGCCTCAAGGGCTGGACGCAGAAAGACATGGACAACGCACTTGCAGCTCTTAAGGATCACCATATGAGCCTCACTAAGGCGTCTGCTACATACGGCATCCCCTCGACCACTCTGTGGCAGCGCGCCCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGCAGCGCCAAGTCCTGGGGGGAAGCTGATCTCAAGAGGGCCCTGCACGCTCTGAGGGCTGGAGCGATATCGGCTAACAAAGCTAGCAAAGCTTACGGCATCCCCAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCCGTGGCGTGGCGGCGCGCCGACCTGCCGCGCGCGCTGGCCGCCATCCGCGCCGGCGCCAGCTCCGTGCAGCGCGCCGCCGCGGCGTACGGCATCCCCACCGGCACTTTGTACGGGCGCTGCAAACGGGAAGGCATCGAACTGTCGCGTGCCAACCCCACGCCCTGGTCGGAAGGCGCCATGGGGGAAGCGCTGGAAGCCGTCAGGGTGGGCGCGATGTCGATAAACCAGGCGGCCATCCACTACAACCTGCCCTACTCCTCGCTCTACGGCCGCTTCAAGCGCTGCAAGCCGCCCCCGCCGCAGCACCCGCCACAGGGCTACCAACCTCCCGACCCTCAAAAGCCACTCCAAGACCAGCAGCTCAGCAGCGAGCCAGAGCTAGGACAGCATCAGCCCCAGAACTACAGTCAGTCTGGCGACGGCCCGCCGCAGTATTTACAGCACCCTGGATACAGCGTGGAGACTATGCCTTATAGTGTGGTCCAGGACGCATACAGCCTGCACGGGGGGCCGTACTACGCAAGCTGCCACGCGCCCAGCTGA
- Protein Sequence
- MPSYGVSSVKCEPLSEDDDSNLHFHHDFINNQACPRDGALEDLALPTPAGPAATPVCVKQEPAETAATFETLESTPRGNSLILMKLQGSTLLERHLALGAREVPLSEEFTPLLIVKEEPLSEGEQHSRSGEDSTEPPTKGSLKGWTQKDMDNALAALKDHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSAKSWGEADLKRALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVAWRRADLPRALAAIRAGASSVQRAAAAYGIPTGTLYGRCKREGIELSRANPTPWSEGAMGEALEAVRVGAMSINQAAIHYNLPYSSLYGRFKRCKPPPPQHPPQGYQPPDPQKPLQDQQLSSEPELGQHQPQNYSQSGDGPPQYLQHPGYSVETMPYSVVQDAYSLHGGPYYASCHAPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -