Basic Information

Insect: Coenonympha glycerion
Gene Symbol: -
Assembly: GCA_963855885.1
Location: OY979639.1:5115458-5126698[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 6.2e-05 0.0038 18.2 1.5 1 23 412 434 412 434 0.96

2 5 0.0049 0.3 12.3 0.6 1 20 440 459 440 462 0.94

3 5 1.6e-05 0.00096 20.1 5.4 1 23 481 503 481 503 0.98

4 5 5.9e-05 0.0036 18.3 5.7 1 23 509 531 509 531 0.99

5 5 2.5e-05 0.0016 19.5 5.3 1 23 537 559 537 559 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	6.2e-05	0.0038	18.2	1.5	1	23	412	434	412	434	0.96
2	5	0.0049	0.3	12.3	0.6	1	20	440	459	440	462	0.94
3	5	1.6e-05	0.00096	20.1	5.4	1	23	481	503	481	503	0.98
4	5	5.9e-05	0.0036	18.3	5.7	1	23	509	531	509	531	0.99
5	5	2.5e-05	0.0016	19.5	5.3	1	23	537	559	537	559	0.97

Sequence Information

Coding Sequence: ATGAATCCGGATCACCACAGTATCAATACGGGTGGTGGCCAGCCGAGTAATTCGGAGTCTCAGAACTCGAGGGTGCAGACCGCgcagcaacagcagcagcaggGATCCAACTTGCCGCCAACGACGTCTGCTACCGACTTGCGAGTCAACTCTGCAGCTGTGAACGTCGCTTTGTCGAGCGTGGCTAAATACTGGGTGTTTACAAACCTCTTTCCGGGCCCATTGCCGCAGGTATCCGTCTACGGCTTGCCTGGTACCAGGATCGAAAATGGAAAACCAGTTCAGGACCTTGGTCAGGCGCATGCTAGTATATTGAACGGGGACCCCAACATTATACTAGGGCATGCGGGGCAGCCTCAGGTCTCAGTGTCTGGTGCGGGACAGCAGATTCCTGTCTCCCAGATCATTGCCACACAGGCTGCACAAGGACATGATGCGCTGGTGGGTCACGGCCAGCAGCAGGAAGCGTCCGCCAGCGCCGCGCAGCTGGTCGCGAGTCATTCCTCCCAGCAGGTACCCAATAACCGGGTCGACTTTGTACAACACCATAACATTGATATGGGTCACCATTCCCAACAGCACATCATGCAGCAACAGTTGATGGCTGCCGCTCGGCCAGAACATGCCAACCAACAGATCCAACTGACAGTCAGCGAGGATGGCATAGTGACGGTGGTGGAGCCGGGCGGTGGCAAGATGGTCGAGAAGGAAGACATGCACGAAAGTATCAAGATGCCCTCAGACCATACGCTCACGGTTCACCAGTTGCAACAGATTGTGGGACACCATCAGGTCATAGACAGTGTGGTCCGCATCGAGCAAGCCACGGGCGAGCCGGCCAACATCCTCGTGACCCAGAACCCGGACGGCACCACGTCCATAGAGACCAGCGCCGTGGACCCGCTCCTCGTCAAGGACGAGAAGAACAACGCTAAGATAGAGGGCGCTCAGTTCGCCATACCCGCGGAAATTAAGGACATCAAAGGAATTGACTTGAAGAGTGCAATGGGAATGGAAGGGGCAGTGGTGAAGATATCAACGGGCTCTGAACACGATCTCCATACCATGTACAAAGTCAATGTAGAGGATCTGTCGCAACTGCTGGCGTATCATGAAGTGTTTGGGAAACTTAGCACTGAAGGACAACAGCAAGCTAAGGTGATAAACGACGTAGAAGTCGAAGTGGCAGGCACGAGCGGGGCGATGTCCGAGGCGGAGTCCTCGCCCGGACACCACGCGTGCGACATCTGCGGGAAGATATTTCAGTTCCGCTATCAGCTGATCGTTCACagACGGTATCACGGTGAGAGCAAGCCGTACACATGTCAAGTTTGCGGGTCCGCTTTTGCCAACGCCGTTGAACTGTCGAAACATGGGAAATGTCACCTTgCGGGTGACCCAGCCGAGCGTCAAGCGAAGAGGCTAGCACAAGACAAACCGTACGCTTGTTCAACGTGTCACAAGACTTTCTCTAGGAAGGAGCACCTTGACAACCATGTCCGCAGTCACACTGGCGAGACGCCTTACAGGTGTCAGTTCTGTTCGAAGACATTCACCCGCAAGGAGCACATGGTGAACCACGTGCGAAAACACACGGGCGAGACGCCGCACCGCTGCGAGATCTGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCACACCGGTACGTTGACACACGTGCGTCTTTACCCGCAAGAAGCACATGGTGAACCGCGTGCTAAAACACACGTAGACGCCGCACCGCTGCGAGATCTGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCACACCGGTACGTTGACACACGTGCGTCGTTACCCGGAAGGAGCACATGGTGA
Protein Sequence: MNPDHHSINTGGGQPSNSESQNSRVQTAQQQQQQGSNLPPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPLPQVSVYGLPGTRIENGKPVQDLGQAHASILNGDPNIILGHAGQPQVSVSGAGQQIPVSQIIATQAAQGHDALVGHGQQQEASASAAQLVASHSSQQVPNNRVDFVQHHNIDMGHHSQQHIMQQQLMAAARPEHANQQIQLTVSEDGIVTVVEPGGGKMVEKEDMHESIKMPSDHTLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAVDPLLVKDEKNNAKIEGAQFAIPAEIKDIKGIDLKSAMGMEGAVVKISTGSEHDLHTMYKVNVEDLSQLLAYHEVFGKLSTEGQQQAKVINDVEVEVAGTSGAMSEAESSPGHHACDICGKIFQFRYQLIVHRRYHGESKPYTCQVCGSAFANAVELSKHGKCHLAGDPAERQAKRLAQDKPYACSTCHKTFSRKEHLDNHVRSHTGETPYRCQFCSKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGTLTHVRLYPQEAHGEPRAKTHVDAAPLRDLQEELHAQGALHEPRHVAHRYVDTRASLPGRSTW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00779050;
90% Identity: iTF_00353543;
80% Identity: -