Cgly021698.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979651.1:1341900-1348948[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.23 14 7.0 0.2 5 23 278 297 277 297 0.90 2 14 0.045 2.8 9.2 3.9 1 23 303 325 303 325 0.96 3 14 9 5.5e+02 2.0 0.4 6 23 336 353 333 353 0.91 4 14 2.2 1.3e+02 3.9 2.0 1 23 359 382 359 382 0.88 5 14 0.47 29 6.0 0.0 1 16 391 406 391 407 0.90 6 14 2.4e-05 0.0015 19.5 1.5 2 22 510 530 509 533 0.89 7 14 1.7 1e+02 4.3 5.4 3 23 565 586 563 586 0.97 8 14 0.00052 0.032 15.3 0.6 2 23 592 613 591 613 0.94 9 14 1 63 5.0 1.0 2 20 617 635 617 637 0.91 10 14 8.4e-05 0.0051 17.8 2.0 1 23 663 686 663 686 0.95 11 14 0.0014 0.086 14.0 0.4 1 23 692 714 692 714 0.92 12 14 0.091 5.6 8.3 0.1 1 23 720 742 720 742 0.97 13 14 0.38 23 6.3 0.4 1 23 748 771 748 771 0.83 14 14 0.0018 0.11 13.7 0.2 2 23 778 800 777 800 0.94
Sequence Information
- Coding Sequence
- ATGAATCGCCAAGTTGATGTTAAGGCTCTGGTGTCGCACGTAATACGTGGAGACGGCGTCAACAAGTGCCGAATATGCATGGGAGACACTACCGAAGGCCAAGTGTATCTGACTGATACCGTTTTAATGGAGGGAGACAAGCCCGTAACGCTATCTGAACTGCTGGAGACTGTCACCGGAATCCAGGTGGCTCCGTACGGAGACCTGCCAACCAAACTGTGCACAGAATGCTGGGCCTCCGCAGTACACGTTGCCAACTTCAGATCAATGTGCATACAGACGTCCCACAAATGGGATGTGACACTGCATCTGTTTAACAACCTACCCTCACAATACTCGAAAGAGATCAAAATAATGTACGCTGTATTGAACGATAGTCAAATGATTGTATTTTTAGATGAAAACGAGTCCAACTCAGACACAGTATTTGTTAAATTAGAGCCCGATTACAACCAAGTTGATGAACCTGAACAGAATAAAAGGATTAGTGATGTCTTGGAGCAGACCGACCTGCCTGGAGGTCTTTGCAAAGATTGCGCCAACAACGCATTACTTGCGTGGAACTTCAGATTGCTCTGCACTAGTTCTGATGAAGAGTGGACTAGGATTGCCACAGTCCTAGCTCGGAACACTGAAGACCTGACTGCAGACCCTCAAGATACTGTCGTATATATTTGCCTGAACTCTGAAGGCTTAGTCGTCAAAGACCACGTGGCCAAAATGTACAACCTAACTGAAGCAGCTCAAACACTAAATAATATAGTACAGAAAATGGAGAGACAACAAAAACGCGAGCAATCAaagaagcaaaacgaactaatACGCATCAAAAATTGCGGGATGAAGTACACCAAAAAGCCGTCGCTAAGGATCCACGTAATACAGAAGCATTTGAACGTCCTGCCATATGTGTGCCAGATATGTGGGAAGCGTAGCTCTACTAAGAACCATCATAAATCCCACGAACTTGTTCATACAAAAGAAAGGGAGGTTTATCAGTGTTTCTGCGGTGCTAAAATGAGGAGCTCCGTCGGTTATAAATTGCATCAACGAATTCATTCTGGTGAAAAGCCGTATGAATGTAAGCATTGTGGCGACAGATTCCTGTCTGCTTCACGCAGATTGGATCACATAAAACGGAGACATAGGACAGCTCCTGGCGCTTTGGCCCATATTTGTGAAAAGTGTGGAGCGGCATTTATACAAGAAGAGCAATTGTTGCCGCCAATGCTTTGCGTAGCGTGCACGCACATCGCCACAACAGCATACGAATTCCGCTTGTTCGCTAGGAACTCGCAGAAACTGTGGACAACCTGCATCGCATCCGTGGATAGCATATTCCCGTTAAACACCCAGAACTCTCGCAAACCGTTGTACGTCATAATTAAAGAGAACATGCTGATCCAAACTATCAACACTTTTGAGGGTACAGCGAAAGATTTAGTGCACCGCCTATCGAATCGCTTTAAAAAGAAACCGATACTAAACGAAAGGAAGCCAAGGTATCCGCGCTCCGGACCTTCTTGCGATTGCACTGATTGCGGGAAAACGTTCTTCAGTCCATATTACCTGAATGTTCATCTACGGAACAGCGGCCACAAGGAAGCCTGCTGGCTGTGCGGTGCCATGATGATACGCGGACGACAAATGAGGGAGCATTTGTTGGATGAGCACAATACGAACATGTGCCTATGTTCGGAGTGTCCGTTGCTCTTCAAGAACGACACGGATAGAAAAAGGCATCTTAAAACTTGTCACGGCCCGGGCAAGCTCACTTGCAACGACTGCGGGAGAACTTTCCAGAGGAAGGCCTCCTTTGACGTCCACTCCGAAATGCATATAGTCAGAACGTGCAGGGCTTGCGGGGTGCAGTTCACGAACCGGGGATGTTATAGAGAGCACAGAGCCAAATGCGAGCCGGGCGCCAAACCTGACTTAAAAACCGTACCGCGAAGTCGTCGTTCAAACATACGAGACCCGGCGACATTCACTTGCGACTATTGCAACAAAACGTACCACTCCAGACCTCAGCTGAAGAACCATATACTATGGATCCACATGGACATAAGACCGCACCAGTGTCAATGGTGCGGGAAAAGGTTCTACACGCCAGCGCGGCTGGCGGAGCATAACGTGGTGCACACGAGGGCGAGGAACTTCGAGTGCGATATCTGTGGCGCGAAATTGGtctccaaaatggcggccgtgtACCACAGACGAAGGCACACGGGGGAGAAGCCGTATGAGTGCGCGGACTGCGGGGAGAGGTTCCTGTCCTCTTCGCGAAGGTCGGAGCACGCGAAGCGGAGGCACAACCGAGGTGTGCGGTTGCCGTGCCTGATTTGCGGGGCGACATTCGTGCGGGGCCACGAGCTGAGGAAACACGCGCTGAAAGTCCACGAGGGGCGAACGGAATGCGATGCACGCGTTGATACCGCAACGTGA
- Protein Sequence
- MNRQVDVKALVSHVIRGDGVNKCRICMGDTTEGQVYLTDTVLMEGDKPVTLSELLETVTGIQVAPYGDLPTKLCTECWASAVHVANFRSMCIQTSHKWDVTLHLFNNLPSQYSKEIKIMYAVLNDSQMIVFLDENESNSDTVFVKLEPDYNQVDEPEQNKRISDVLEQTDLPGGLCKDCANNALLAWNFRLLCTSSDEEWTRIATVLARNTEDLTADPQDTVVYICLNSEGLVVKDHVAKMYNLTEAAQTLNNIVQKMERQQKREQSKKQNELIRIKNCGMKYTKKPSLRIHVIQKHLNVLPYVCQICGKRSSTKNHHKSHELVHTKEREVYQCFCGAKMRSSVGYKLHQRIHSGEKPYECKHCGDRFLSASRRLDHIKRRHRTAPGALAHICEKCGAAFIQEEQLLPPMLCVACTHIATTAYEFRLFARNSQKLWTTCIASVDSIFPLNTQNSRKPLYVIIKENMLIQTINTFEGTAKDLVHRLSNRFKKKPILNERKPRYPRSGPSCDCTDCGKTFFSPYYLNVHLRNSGHKEACWLCGAMMIRGRQMREHLLDEHNTNMCLCSECPLLFKNDTDRKRHLKTCHGPGKLTCNDCGRTFQRKASFDVHSEMHIVRTCRACGVQFTNRGCYREHRAKCEPGAKPDLKTVPRSRRSNIRDPATFTCDYCNKTYHSRPQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHNVVHTRARNFECDICGAKLVSKMAAVYHRRRHTGEKPYECADCGERFLSSSRRSEHAKRRHNRGVRLPCLICGATFVRGHELRKHALKVHEGRTECDARVDTAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -