Cgly024208.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979654.1:1573238-1585437[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00034 0.021 15.9 2.9 1 23 469 491 469 491 0.99 2 14 0.19 12 7.3 6.3 2 23 499 521 498 521 0.96 3 14 8.1e-05 0.0049 17.9 1.1 1 23 552 575 552 575 0.95 4 14 0.0015 0.091 13.9 0.1 2 23 580 602 579 602 0.96 5 14 0.57 35 5.8 0.1 2 21 796 815 796 820 0.92 6 14 0.00016 0.01 16.9 1.3 1 23 906 928 906 928 0.98 7 14 0.0081 0.49 11.6 0.3 2 23 934 956 933 956 0.94 8 14 1.4 86 4.5 0.8 1 21 964 984 964 985 0.92 9 14 0.53 33 5.8 0.6 1 21 1048 1068 1048 1069 0.94 10 14 0.11 6.5 8.1 0.8 1 21 1119 1139 1119 1140 0.95 11 14 0.12 7.4 7.9 0.3 1 21 1144 1164 1144 1165 0.94 12 14 0.09 5.5 8.3 0.4 1 21 1215 1235 1215 1236 0.95 13 14 0.014 0.86 10.8 1.5 1 23 1286 1308 1286 1308 0.97 14 14 0.0045 0.28 12.4 3.8 1 23 1317 1340 1317 1340 0.95
Sequence Information
- Coding Sequence
- ATGATATGTTTGGACCCGCACCGCAAACTGTACCAGCCGAGCAAATATAATTTAGATATGGAGTATGAGAATCTAACTGGAATTTCGCTGGGAGATGTGGTCAACTTCATGCCGATGTTCTGCAGCGAGTGTGCTCAGCGGCTGGTGAACTGTGGCAAGTTCAGAGACAAGAGTATGAGAGCCTTCCAGCTGCTGACGGAGCTGCTTCAGAACAATGCAGAGGTGAGAACCGCTCATTGTCATCTTCTCGCCGATGTTTTGCAGCGAGTGCGCTCAGCGGCTGTGAACTGCTGCAAGCTCTGGGATAAGAGTCTGAAAGCCTTCCAGCTGCTGACGGAGCTGCTTCACAACAATGCAGAGTTGTCGCTGCAGACGCTGTCGTCGGTGGACCGCGCGCGCTGTCAGCTGACGTCCAGCGTCGTGAAGAAGACGTTTGAGCCCGACCACTGCGACCTATATGTGACGGAGGACACTAGGAGTATTGACAAGgtgaaaaatgaaaaattggaTTTATACGAAAAGTTACACTTAAAGTGTGAAACTAATTTAGATCTGGAGCTAGAATCTGGCAAGATTTGTGATGATGCTGCGGAGTTTATAGCAGATGACGTCAACACCGACGTAGAAATAACTAATGACGATGCGAAAGATGGTGTAAATGTTGTGTATATTGATGATTCTTCAAACGATGATCTTTATAATCATGAAGACAATGTGCAGGGTGCAAAGCAAAGCAACACAAACGTTAATAGTCATGAAAAGAAAccaaaaatactaaatcataaCACAATAACAGCTATAAGAAACGCTGACGCTAAATGGTTGAATGTCGACATTGATATAGACTTCGATGTGAAAGAAGATATACAACAAGGTGCGAACGACGTATATAGAAGTGGTGAAAATGTCAAAGCTATACCATCGTACAGCAATATTAATGAAGATAACAAATATCTTCCTAGTAAAAACTTCGATTCAACCAAATATATTGCTATTGGAGATGATATTGCTAACAAAGAAAGAGTTAAAGATGAAAATGATGAACTATCTGATTATTATGAAGAAATTGGTGTGATACCTTTGGACGATGATATCGGTTATAACATTCATCAAGGAAACCAATCCGTGAAGATCGAAAACgggAAAATACTATGCAAGCCTTGGCCACAGCTAGGCATCGATAAACTCGCGTATGTGTACCTCGGCTTCGCCTTAGCCCACATTTACAAGTTCGTCCTACAATGCCTCTCGCTGGCCGCGGCAGTTAAATGTactgtttctttatttatttcagaaccAATATCTGAAAAATTCAAATGGTTTAGGAAAATTGAACGTAGTCCCGAGGAGCAAATAGCAGACTGGGCGCAGAGACGGGAGAGCGATAGATACAGAGACACTCGCTACAAATGTACCGATTGCTACAAGTCCTTCAAAGTTGAGAAAACTTACAACCTGCATATGGAGAAACATTCAGATAAATATGGTGCAATCGAGTGTCACATTTGCCACGTCCGTGTTAAGACTCGCAGCTGTCTAACGGACCACAATCGAAGGACACACAAGTTCCTCTATCGCTGCACAAAGTGCTCCTTTGTCACTAACTTCAGTGAGGTGGCATCCAACCACTCGCGATGGCACGACGGCAAGACATACGAATGTCCGCACTGTGGAAAAGTCTTCACCAAACCTACGACGTACTACGGCCATGTGCGCTTCGCTCACCCGTCCGACACCGTGTGCGCGCTGTGCGGGTACTCCTTCATCGGCAAGCGAGGACTGTGGATGCACCAGAGGAAGGTGCATCGCGACGACAAGCAGAAACAAGATTTCTTGACGCAAGTGGCTCCGCCGCCATACGCTCGCAAGAAACAAGATTTCTTGACGCTAGTGGCTCCCCCGCCATACGCTCGCAAGAAACAAGATTTCTTGACGCAAGTGGCTCCGCCGCCATACGCTCACAAGAAACAATATTTCTTGACGCAAGTGGCTCCGCCGCCACATGCTCGCAAGAAACAAGTTTTCTTGACGCAAGTGGCTCCGCCGCCTTATGCTCGCAAGAAACAAGTTTTCTTGACGCAAGTAGTTCTGCCGCCATACACGCGCAAGAAACAAGATTTCTTGACGCAAGTGGCTCCGCCGCCATACGCTCGCAAGAAACAAGATTTCTTGACGCAAGTGGCTCCGCCGCCATACGCTCGCAAGAAACAAGATTTCTTGACGCAAGTGGCTCCGCCGCCATACGCTCGCAAGAAACAAGATTTCTTGACGCAAGTGGCTCCGCCGCCATACGCTCGCAAGAAACAAGATTTCTTGACGCAAGTGGCTCCGCCGCCATACGCTCGCAAGAAACAAGATTTCTTGACGCAAGAGTTGTCCGGTCCCCAGTGCTCGCAGTGCAACGTGCGCTTCGCGAGCGAGGCTGCGTATGACACGCACCTGCAGGTGTCGCCCAAGCACGGCGCGCCCGGTGATCTGAAAAGGAACGATGCGTCTGTAGGAATACTGGAAAAACCTGAGTTTCCACGTAAAGAGAGACAAGCAGGGTTGGACCTTGCAAGTGAAGAAGGGACAAGGCGGATACGAAGAACAAACAAGAAATGTATCAAAAACTGCAAACTGTGCAACGCTGTGCTGGAGAGCCGGCTCAAGTACCACTGGCATCTGCGACACTACCATCCGGACAGCGTCGACATCGAGCCTACCAAGCGAGCCTACATGTGCGAGCAGTGTGGGAAACTCTGTATTAGCAATTATGATCTCCAAGACCACATGTTGAGGCACGATAGTAAAAAGGTGGAATGCAACGCGTGCGACAAGAAGTTCTACTCAACGAAAGCTCTGAAGGACCACGTGGAGagaatccacgatgacgcacaGAGACACACGTACTTGTGCGCGCACTGTGCGTACCAGACCAAGGAGAGGGGCAACTTCAGGAGGCACACGCAGATCAAGGAGAGAGGCAACTTCAGGAGGCACACGCAGGTTAGTGCGAGCACCACGTGCACAAAACACACAATTCCGCACAGAGGCGAGGCGACACATACGTGTGCACGTTCTGTGCGTGCCAGATCAAGGAGAGAGGCAACTTCAGGAGGCACACGCAGAACACACAATGCCGCACAGAGGCGAGACACATACGCGTGCGCGCACTGTGCGTACCAGACCAAGGAGAGAGGCAACTTCAGGAGGCACACGCAGGTTAGTGAGTGCACCACGTGCACAGAACACACAGTGCCGCACAGAGGCGAGACACATACGCGTGCGCGCGCTGTGCGTACCAGACCAAGGAGAGAGGCAACTTCACTAGGCACATGCAGAACACACAATGCCGCACAGAGGCGAGACACATACGCGTGCGCGCACTGTGCGTACCAGACCAAGGAGAGAGGCAACTTCACTAGGCACATGCAGAGGCGAGACACATACGCGTGCGCGCACTGTGCGTACCAGACCAAGGAGAGAGGCAACTTCACTAGGCACATGCTGGTTAGTGCGAGCACCACGTGCACAGAACACACAGTACCGCACAGAGGCGAGACACATACGCGTGCGCGCGCTGTGCGTACCAGACCAAGGAGAGAGGCAACTTCACTAGGCACATGCAGAACACACAATGCCGCACAGAGGCGAGACACGTACGCGTGCGCGCACTGTGCGTACCAGACCAAGGAGAGAGGCAACTTCACTAGGCACATGCAGGTTAGTGCGAGCACCACGTGCACAGAACACACAGTGCCGCACAGAGGCGAGACACATACGCGTGCGCGCACTGTGCGTACCAGACCAAGGAGAGAGGCAACTTCACTAGGCACATGCAGAACACACAGTGCCGCACAGAGGCGAGACACATACGCGTGCGCGCACTGTGCGTACCAGACCAAGGAGAGAGGCAACTTCACTAGGCACATGCAGATCCATACGGACTTGAACACGAGGAGATGGTTCCACTGTACATTATGCGAGAAAAAGACCACAACGAGTCAAGCGCTGCAACGCCATATTCTGCACGTGCATGAGAAGGTGCCGTGGCCCGCCAGAGTGCGCGCCTCGCGAGCGCGCGCGGCCGCTCCGCGCACTCGCGACACAGACTAG
- Protein Sequence
- MICLDPHRKLYQPSKYNLDMEYENLTGISLGDVVNFMPMFCSECAQRLVNCGKFRDKSMRAFQLLTELLQNNAEVRTAHCHLLADVLQRVRSAAVNCCKLWDKSLKAFQLLTELLHNNAELSLQTLSSVDRARCQLTSSVVKKTFEPDHCDLYVTEDTRSIDKVKNEKLDLYEKLHLKCETNLDLELESGKICDDAAEFIADDVNTDVEITNDDAKDGVNVVYIDDSSNDDLYNHEDNVQGAKQSNTNVNSHEKKPKILNHNTITAIRNADAKWLNVDIDIDFDVKEDIQQGANDVYRSGENVKAIPSYSNINEDNKYLPSKNFDSTKYIAIGDDIANKERVKDENDELSDYYEEIGVIPLDDDIGYNIHQGNQSVKIENGKILCKPWPQLGIDKLAYVYLGFALAHIYKFVLQCLSLAAAVKCTVSLFISEPISEKFKWFRKIERSPEEQIADWAQRRESDRYRDTRYKCTDCYKSFKVEKTYNLHMEKHSDKYGAIECHICHVRVKTRSCLTDHNRRTHKFLYRCTKCSFVTNFSEVASNHSRWHDGKTYECPHCGKVFTKPTTYYGHVRFAHPSDTVCALCGYSFIGKRGLWMHQRKVHRDDKQKQDFLTQVAPPPYARKKQDFLTLVAPPPYARKKQDFLTQVAPPPYAHKKQYFLTQVAPPPHARKKQVFLTQVAPPPYARKKQVFLTQVVLPPYTRKKQDFLTQVAPPPYARKKQDFLTQVAPPPYARKKQDFLTQVAPPPYARKKQDFLTQVAPPPYARKKQDFLTQVAPPPYARKKQDFLTQELSGPQCSQCNVRFASEAAYDTHLQVSPKHGAPGDLKRNDASVGILEKPEFPRKERQAGLDLASEEGTRRIRRTNKKCIKNCKLCNAVLESRLKYHWHLRHYHPDSVDIEPTKRAYMCEQCGKLCISNYDLQDHMLRHDSKKVECNACDKKFYSTKALKDHVERIHDDAQRHTYLCAHCAYQTKERGNFRRHTQIKERGNFRRHTQVSASTTCTKHTIPHRGEATHTCARSVRARSRREATSGGTRRTHNAAQRRDTYACAHCAYQTKERGNFRRHTQVSECTTCTEHTVPHRGETHTRARAVRTRPRREATSLGTCRTHNAAQRRDTYACAHCAYQTKERGNFTRHMQRRDTYACAHCAYQTKERGNFTRHMLVSASTTCTEHTVPHRGETHTRARAVRTRPRREATSLGTCRTHNAAQRRDTYACAHCAYQTKERGNFTRHMQVSASTTCTEHTVPHRGETHTRARTVRTRPRREATSLGTCRTHSAAQRRDTYACAHCAYQTKERGNFTRHMQIHTDLNTRRWFHCTLCEKKTTTSQALQRHILHVHEKVPWPARVRASRARAAAPRTRDTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -