Cgly021096.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979650.1:1030729-1048268[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0032 0.19 12.8 3.5 1 23 253 275 253 275 0.98 2 13 0.43 26 6.1 0.7 3 23 285 306 284 306 0.92 3 13 3.5 2.2e+02 3.3 0.4 1 23 310 333 310 333 0.91 4 13 0.005 0.31 12.2 3.2 1 23 419 441 419 441 0.98 5 13 0.21 13 7.1 1.9 2 23 450 472 449 472 0.96 6 13 1 62 5.0 2.3 1 23 476 498 476 498 0.98 7 13 5.6e-05 0.0034 18.4 2.4 1 23 503 526 503 526 0.98 8 13 1.1 69 4.8 4.1 1 23 530 553 530 553 0.87 9 13 7.2 4.4e+02 2.3 0.0 2 19 571 588 570 591 0.90 10 13 2.2 1.3e+02 3.9 0.2 2 23 986 1008 985 1008 0.89 11 13 2.3e-06 0.00014 22.7 1.5 1 23 1017 1039 1017 1039 0.98 12 13 0.00077 0.047 14.8 0.7 1 23 1045 1067 1045 1067 0.96 13 13 1e-05 0.00062 20.7 2.6 1 23 1073 1096 1073 1096 0.98
Sequence Information
- Coding Sequence
- ATGTTCGAATTAAAAATGTGCACGGTGTGTTTGCAAATGAATGTAAAGTGTTATAACTTGAATACAAACATTCAGCTCAGGAAGGACTATAACTTGATATCTGGTTTGCAGAACTGCAAACGAAATGGTTTTCCGGAGTACCTGTGCTATCTGTGCACGGGGTATGTGCAGAGTTGCAAGAGATTCCGTGATAGATGTCAGAGAGCATACTGTGTTCTGGCTGAGATCTTGCAAAGGAATAAACAGataACAAAACCAATAATTGAAGAAATAGACTGTGATACATTAAAAATAGGTCCCACCCTATCCTTTTTAAGTGACAACAGAGCAAAAACAAAAACGGACAGTGTGAAGAAATGGATACAAGAGTGTAGCAACAGTACAGAACAGCGCAAGAGCACTCCCTCCGATGAGTATGGCCGACTGGTTGATAAACTGGTGTTTGAGATAGAGAACAACCCATCGATGACTATAAAAGCTGAGAATACTATTGCTAAAAATAGTGTGAATCTTACTAAAGAGGAACGTCACAATGATACAGAAAACACACATGCTGTTGATTTGTTTAGTCAAGATTTCGACGAGATAGACCAAGATTTCGACATAGACGCAGATGAGCAATTAGAACCAACTGTTAGCACAGACCTAGATGAAGCTATGCTAAATCTAGACTTTGCGGAGATGGTGCCTATAAGCGTGGCAGAGGCAAAAGCTGTTTTGGAGTTGAATGAGCTGATCATGATCAATCAAGGTCGGCACAAGTGCGAGGTTTGCAAGAGAAGCTTTCAGAGTGAGAAGCGGCTAGAGGTGCATAAGAGGATGCATGATACGCACGTGAGCGGCACGTGGCTGTGCGAGCTGTGCAGCTACTACTACAAGTCGGAGTTCCTGCTGCGCACGCACATCACCGACAAGCACATGTACAAGTATCTGTGCAAAATGTGCCCCGAAGTCTCCTTCGACAGGTTGACAGCCAAACGCCATTACATGTGGACTCATTTACACAAAAAGCCGTTGAGAAAGGCGAAAAATTCTGGCTTAGTGCCGTCGAAATTGGCTTTAAAAGGGCCAGCAAAAGGCCAGGCCAGGGCCAAATGGTTGAATAACAAAGGGGTGAAAAAGGAAATACAACCTGTCAAGAAAAAATCTAGAAAACACCCGGACGATTATCTTATCTACTCACCTATTAGTCAAGAGGAACAGTACGCTATAGTCAGAGACAGGCAAAACACGAAGAACTTTACAGAGTCACGGTTCAAGTGTGAGTACTGCTTCAAAGGCTTCCGCGAGATCATGACCTTCACCAAACACCTTCAGAAACACGACCCCGCGGTGTCCGGGAACCTGCAGTGCGACATGTGCAAGATCTACTGCCCGACTGCGCGCAAGATGTACAAACACATGAACATCACGCACCTGTTCAAGTACACTTGCCAGGTGTGCGCCTTCGTCTGCTACAACAGGGGCCAGGCGATGATGCACTACAGGTATCACAAGAACGTCACGTACTCCTGTGAACATTGTGATAAAGTTTTCACTAAGGCTTCGACCAGACTGACGCACATCCGGATAAAGCACCCGTCGACGTTCATCTGCAGCATGTGTGGACACAGCTTTGTGAGTGAAACCGGCCTTCACTGCCACAAAAAGCTGGCGCACCGACAGGAGGTAGAGGAAGACAAGGGAGAGGTGGACACCAGCGACCCGCTGTACTGCGCGGAGTGCGAGATCCAGTTCCGCGACGACGCCGCCTTCGCCACGCACTTCGGCTCCTCCAACAAGCACGCCGACACCAACCTTTCCGCGACGACGCCGCCTTCGCCACGCACTTCGGCTCCTCCAACAAGCACGCCGACACCAACCTGTGAGTGTCGCTGCACCCCGGCAGGGCGCGGGCGAGGTGACACCGGCGACCCGCCGTACTGCGCGGAGTGCGAGATCCAGTTCCGCGACGACGCCGCCTTCGCCACGCACTTCGGCTCCTCCAACAAGCACGCCGACACCAACCTTTCCGCGACGACGCCGCCTTCGCCACGCACTTCGGCTCCTCCAACAAGCACGCCGACACCAACCTGTGAGTGTCGCTGCACCCCGGCAGGGCGCGGGCGAGGTGACACCGGCGACCCGCCGTACTGCGCGGAGTGCGAGATCCAGTTCCGCGACGACGCCGCCTTCGCCACGCACTTCGGCTCCTCCAACAAGCACGCCGACACCAACCTTTCCGCGACGACGCCGCCTTCGCCACGCACTTCGGCTCCTCCAACAAGCACGCCGACACCAACCTGTGAGTGTCGCTGCACCCCGGCAGGGCGCGGGCGAGGTGACACCGGCGACCCGCCGTACTGCGCGGAGTGCGAGATCCAGTTCCGCGACGACGCCGCCTTCGCCACGCACTTCGGCTCCTCCAACAAGCACGCCGACACCAACCTTTCCGCGACGACGCCGCCTTCGCCACGCACTTCGGCTCCTCCAACAAGCACGCCGACACCAACCTGTGAGTGTCGCTGCACCCCGGCAGGGCGCGGGCGAGGTGACACCGGCGACCCGCCGTACTGCGCGGAGTGCGAGATCCAGTTCCGCGACGACGCCGCCTTCGCCACGCACTTCGGCTCCTCCAACAAGCACGCCGACACCAACCTTTCCGCGACGACGCCGCCTTCGCCACGCACTTCGGCTCCTCCAACAAGCACGCCGACACCAACCTGTGAGTGTCGCTGCACCCCGGCAGGGCGCGGGCGAGGTGACACCGGCGACCCGCCGTACTGCGCGGAGTGCGAGATCCAGTTCCGCGACGACGCCGCCTTCGCCACGCACTTCGGCTCCTCCAACAAGCACGCCGACACCAACCTGTCCATAAAACCGGTGCGCAGTAAGAGCGAGCGGccgcgcgggcgcgggcgtgcGCGGCGCGACCGCAGCAGCGACATCGTCAACAACGGCGTGGCCACCGCCACATACTGCGAGATTTGTCAGAAGTTCCTGGCGACGGACGTGCAAGCGAGAAAGCACTACGAAGCGGAACACCCCGGCACGGAGTATCTGAAGCGATACATGTGCGACATCTGCGGACACACCACCAagCAATACGCAAACTTGACGGTGCACATGCGTACCCACACGCAGGAGAAACCGTACGCGTGCCCGCACTGCGAGCGACGCTTCAGCATGCCCAGCAACCGGGACAGGCATCTTGTGGTTCACACAGGCGAGAAGCGCTACCAGTGCCAGCACTGCAACCGCCGCTTCACGCAGAGCAGCGCGGTCAAGCTGCACATCCAGACAGTGCACCTCAAGATCCCGTACGCGCCGTGGGACAAGAAGAACCGCAAGCGGCGCCGCGAGACGGAGGTGGCGccactgccgccgccgccgccgaccgCGCAGAAGATACTGATAGACACGGGGAATAACTACCTGAGTGCTTACATCACGTACAATGAGtaa
- Protein Sequence
- MFELKMCTVCLQMNVKCYNLNTNIQLRKDYNLISGLQNCKRNGFPEYLCYLCTGYVQSCKRFRDRCQRAYCVLAEILQRNKQITKPIIEEIDCDTLKIGPTLSFLSDNRAKTKTDSVKKWIQECSNSTEQRKSTPSDEYGRLVDKLVFEIENNPSMTIKAENTIAKNSVNLTKEERHNDTENTHAVDLFSQDFDEIDQDFDIDADEQLEPTVSTDLDEAMLNLDFAEMVPISVAEAKAVLELNELIMINQGRHKCEVCKRSFQSEKRLEVHKRMHDTHVSGTWLCELCSYYYKSEFLLRTHITDKHMYKYLCKMCPEVSFDRLTAKRHYMWTHLHKKPLRKAKNSGLVPSKLALKGPAKGQARAKWLNNKGVKKEIQPVKKKSRKHPDDYLIYSPISQEEQYAIVRDRQNTKNFTESRFKCEYCFKGFREIMTFTKHLQKHDPAVSGNLQCDMCKIYCPTARKMYKHMNITHLFKYTCQVCAFVCYNRGQAMMHYRYHKNVTYSCEHCDKVFTKASTRLTHIRIKHPSTFICSMCGHSFVSETGLHCHKKLAHRQEVEEDKGEVDTSDPLYCAECEIQFRDDAAFATHFGSSNKHADTNLSATTPPSPRTSAPPTSTPTPTCECRCTPAGRGRGDTGDPPYCAECEIQFRDDAAFATHFGSSNKHADTNLSATTPPSPRTSAPPTSTPTPTCECRCTPAGRGRGDTGDPPYCAECEIQFRDDAAFATHFGSSNKHADTNLSATTPPSPRTSAPPTSTPTPTCECRCTPAGRGRGDTGDPPYCAECEIQFRDDAAFATHFGSSNKHADTNLSATTPPSPRTSAPPTSTPTPTCECRCTPAGRGRGDTGDPPYCAECEIQFRDDAAFATHFGSSNKHADTNLSATTPPSPRTSAPPTSTPTPTCECRCTPAGRGRGDTGDPPYCAECEIQFRDDAAFATHFGSSNKHADTNLSIKPVRSKSERPRGRGRARRDRSSDIVNNGVATATYCEICQKFLATDVQARKHYEAEHPGTEYLKRYMCDICGHTTKQYANLTVHMRTHTQEKPYACPHCERRFSMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRRETEVAPLPPPPPTAQKILIDTGNNYLSAYITYNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00353482;
- 90% Identity
- -
- 80% Identity
- -