Cgly022467.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979651.1:7030169-7034658[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00039 0.024 15.7 1.8 1 23 20 42 20 42 0.96 2 14 0.015 0.9 10.7 0.2 5 23 99 117 96 117 0.96 3 14 0.019 1.2 10.4 0.3 5 23 123 141 121 141 0.96 4 14 0.024 1.4 10.1 0.6 5 23 230 248 227 248 0.95 5 14 0.015 0.9 10.7 0.2 5 23 281 299 278 299 0.96 6 14 0.016 0.96 10.7 0.2 5 23 351 369 348 369 0.95 7 14 0.024 1.4 10.1 0.6 5 23 414 432 411 432 0.95 8 14 0.016 0.96 10.7 0.2 5 23 445 463 442 463 0.95 9 14 0.015 0.9 10.7 0.2 5 23 496 514 493 514 0.96 10 14 0.015 0.9 10.7 0.2 5 23 571 589 568 589 0.96 11 14 0.015 0.9 10.7 0.2 5 23 704 722 701 722 0.96 12 14 0.00014 0.0089 17.1 1.2 2 23 815 837 814 837 0.95 13 14 0.00027 0.016 16.2 2.6 1 23 843 865 843 865 0.94 14 14 0.019 1.2 10.4 8.0 1 23 871 894 871 894 0.97
Sequence Information
- Coding Sequence
- ATGTTCACACACCGCAGCTCGCACTACAGCCACGTCCGGACGCACCTCCCCGCCACGCACGCGTGCGAGCACTGCGACTACCGCACCGCCAACAAGTACGACCTGGCCAAGCACCTGCTCGTACACGCCGACCCGCTGCAGCACTGCGACTACCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACCGCCAACAAGTACGACCTGGCCAAGCACCTGCTCGTACACGCCGGTGAGCCTCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACCGCCAACAAGTACGACCTGGCCAAGCACCTGCTCGTACACGCCGACCCGCTGCAGCACTGCGACTACCGCACCGCCAACAAGTACGACCTGGCCAAGCACCTGCTCATACACGCCGACCCGCTGCAGCACTGCGACTACCGCACTCCGACCCGCTGCAGCACTGCGACTACCGCACCGCCAACAAGTACGACCTGGCCAAGCACCTGCTCGTACACGCCGGTGAGCCTCGCACTCGGACCCGCTGCAGCACTGCGACTACCGCACTCGGACCCGCTGCAGCACTGCGACTACCGCACTCGGACCCGCTGCAGCACTGCGACTACCGCACTCGGACCCGCTGCAGCACTGCGACTACCGCACTCGGACCCGCTGCAGCACTGCGACTACCGCACCGCACACAAGTACGACCTGGCCAAGCATCTGCTCATACACGCCGGTGAGCCTCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACCGCCAACAAGTACGACCTGGCCAAGCACCTGCTCGTACACGCCGGTGAGCCTCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACCGCCAACAAGTACGACCTGGCCAAGCACCTGCTCGTACACGCCGGTGAGCCTCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACCGCCAACAAGTACGACCTGGCCAAGCACCTGCTCATACACGCCGCACTGCGACTACCGCACTCGGACCCGCTGCAGCACTGCGACTACCGCACTCGGACCCGCTGCAGCACTGCGACTACCGCACTCGGACCCGCTGCAGCACTGCGACTACCGCACTCGGACCCGCTGCAGCACTGCGACTACCGCACCGCACACAAGTACGACCTGGCCAAGCACCTGCTCATACACGCCGCACTGCGACTACCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACCGCCAACAAGTACGACCTGGCCAAGCACCTGCTCATACACGCCGGTGAGCCTCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACCGCCAACAAGTACGACCTGGCCAAGCACCTGCTCGTACACGCCGACCCGCTGCAGCACTGCGACTACCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACCGCCAACAAGTACGACCTGGCCAAGCACCTGCTCATACACGCCGGTGAGCCTCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACCGCCAACAAGTACGACCTGGCCAAGCACCTGCTCGTACACGCCGCACTGCGACTACCGCACTCGGACCCGCTGCAGCACTGCGACTACCGCACTCGGACCCGCTGCAGCACTGCGACTACCGCACCGCACACAAGTACGACCTGGCCAAGCATCTGCTCATACACGCCGGTGAGCCTCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACCGCCAACAAGTACGACCTGGCCAAGCACCTGTTCGTACACGCCGGTGAGCCTCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACCGCCAACAAGTACGACCTGGCCAAGCACCTGCTCGTACACGCCGACCCGCTGCAGCACTGCGACTACCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACCGCACACAAGTACGACCTGGCCAAGCATCTGCTCATACACGCCGGTGAGCCTCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACTCAGACCCGCTGCAGCACTGCGACTACCGCACTCAGACCCGCTGCTTGTACGCGCCTCACAGCTCCCTCTGTCGCAGGTATAAAGAAGTGGCGCTGTTCGCGCTGCCCCCGCGCGTACTGCACGGCGTCCAACCTGCGCAACCACGAGCGGCTGGTGCACGAGCGCGTGCTGCGCCACGCGTGCGATGCGTGCGGCAAGATGTTCTACGACCGCACGCACCTGCGGCGGCACGTCGACTCGCACAACGACGTCAAACGtcacGAATGCTCCGTCTGCCACACCGCCTTCTCCCGACGATGTTATTGGAAGAAACATCTTCAAAAACAGCACAGCATTGTTATACCTCCGCTGAGGCCTGGAAGAGGACGACGGATGGATCTTCTAATAGGACAGCATCACGATACCGCAACCAACACCAGCAGAGAACCGCCACCTGCGCAGGCGGTGATATAG
- Protein Sequence
- MFTHRSSHYSHVRTHLPATHACEHCDYRTANKYDLAKHLLVHADPLQHCDYRTQTRCSTATTAPPTSTTWPSTCSYTPVSLALRPAAALRLPHSDPLQHCDYRTANKYDLAKHLLVHADPLQHCDYRTANKYDLAKHLLIHADPLQHCDYRTPTRCSTATTAPPTSTTWPSTCSYTPVSLALGPAAALRLPHSDPLQHCDYRTRTRCSTATTALGPAAALRLPHSDPLQHCDYRTAHKYDLAKHLLIHAGEPRTQTRCSTATTALRPAAALRLPHSDPLQHCDYRTANKYDLAKHLLVHAGEPRTQTRCSTATTAPPTSTTWPSTCSYTPVSLALRPAAALRLPHSDPLQHCDYRTANKYDLAKHLLIHAALRLPHSDPLQHCDYRTRTRCSTATTALGPAAALRLPHSDPLQHCDYRTAHKYDLAKHLLIHAALRLPHSDPLQHCDYRTANKYDLAKHLLIHAGEPRTQTRCSTATTALRPAAALRLPHSDPLQHCDYRTANKYDLAKHLLVHADPLQHCDYRTQTRCSTATTAPPTSTTWPSTCSYTPVSLALRPAAALRLPHSDPLQHCDYRTANKYDLAKHLLVHAALRLPHSDPLQHCDYRTRTRCSTATTAPHTSTTWPSICSYTPVSLALRPAAALRLPHSDPLQHCDYRTQTRCSTATTAPPTSTTWPSTCSYTPVSLALRPAAALRLPHSDPLQHCDYRTANKYDLAKHLLVHADPLQHCDYRTQTRCSTATTAPHTSTTWPSICSYTPVSLALRPAAALRLPHSDPLQHCDYRTQTRCSTATTALRPAACTRLTAPSVAGIKKWRCSRCPRAYCTASNLRNHERLVHERVLRHACDACGKMFYDRTHLRRHVDSHNDVKRHECSVCHTAFSRRCYWKKHLQKQHSIVIPPLRPGRGRRMDLLIGQHHDTATNTSREPPPAQAVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -