Cgly024210.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979654.1:1611777-1631819[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00041 0.025 15.6 1.1 1 23 252 274 252 274 0.99 2 11 7.9 4.8e+02 2.2 0.1 3 22 283 302 281 304 0.85 3 11 0.0009 0.055 14.6 2.7 1 23 335 358 335 358 0.98 4 11 0.0049 0.3 12.2 0.6 1 23 390 413 390 413 0.96 5 11 0.0049 0.3 12.2 0.6 1 23 472 495 472 495 0.96 6 11 0.0049 0.3 12.2 0.6 1 23 506 529 506 529 0.96 7 11 0.0049 0.3 12.2 0.6 1 23 588 611 588 611 0.96 8 11 0.00018 0.011 16.8 2.3 2 23 854 875 853 875 0.96 9 11 7.2e-06 0.00044 21.2 4.5 2 23 883 904 883 904 0.98 10 11 4.1e-05 0.0025 18.8 1.6 1 23 909 931 909 931 0.99 11 11 2.9e-05 0.0018 19.3 1.0 1 23 940 963 940 963 0.95
Sequence Information
- Coding Sequence
- ATGGAAAGTAATGAAGTCAAACAATCTTCAGTTCAGTTCTGCATGGCATGTCTGGACGTGCACGGAAAACTATGTTCCATGAGCAAATACATGGtggcatttaaaaatataaccgGAATATCTCTGGCTGGTGCAGTGAATTTCTCGCCGATGTTCTGCAGCGAGTGTGCTCAGAGGCTGATCAACTGCTGCAAGTTCAGAGACAGAAGTCTGAGAGCCTACCAGCTGTTGTCGGAGCTACTTCACAACAATGCAGAGTTGTCGCTGCAGACGCTGTCGTCGGTGGACCGCGCGCGCTGTCAGCTGACGTCCAGCGTCGTGAAGAAGACGTTTGAGCCCGACCACTGCGACCTACACTTGGTACATGACGCAGGGAATATATTTAAGACTTACGTGAAAAATGAGAAAATCGACGTGCCTCTGGAATTCGAGAACGTAAACGCAATGAGCGATGTCAAATGCGACCTACAGCTAGTGAAAGACGACAGCAACACAGAGGACGACGACGTCATAGTGCACAGCATGAAAGAATGCTCAAACAGAAGGAATCCCAGCATCGAGTGCATTGACTACGAAGACCTAGACATggattatgatgatgatgacaacaAACATGAGGGTAGTCTGAACAATCTAGGTGTTCCTAACAATTGCAAGGAGTTGAGGGAGTTCAAGATATCTGAACGTAGTCCAGAAGAACAGCTGGCTGACTTGAGAGCCAGGCAGGAGACGGACACGTACAAACGCTCGCAGTACAAATGCACTGATTGTTACAAAGGCTTCCAGGACGAAAACGCCTACAACACACACATGGAGAGACACACCGATAAATACGGTCTCCTAGCGTGCCCCATATGCCGTATCCGCGTGAAACTCGGCAAGGATCTTAGTAAACACGTGGGCAACTCGCACAAGACATTATACCATTGTACTAAGTGCTCGTTCGTCACACAccaaaaAAATTCGGCGCTCTGTCATTCGCGATGGCACGATGGCAAAAAGTACAAATGTCAACACTGTGAAGAGGAGTTCATCAAGCCCACATCTTACTTCAACCATCTACGTATAAAGCACCCTTCAGACCACGTGTGCGAGCTGTGCGGGTCAGTGCTGTGCacactcgccttcggctcgggctcaATGCCGCGTATAAAGCACCCTTCAGACCACGTGTGCGAGCTGTGCGGGTACTCGTTCATCGGTGTGAAGGGCCTCATGTACCACATGAGCAGGAAACACTACTCCGATAGCAAGCAGGTCAGTGCTGTGCacactcgccttcggctcgggctcaATGCCGCGTATAAAGCACCCTTCAGACCACGAAACACTACTCCGATAGCAAGCAGGTCAGTGCTGTGCacactcgccttcggctcgggctcaATGCCGCGTATAAAGCACCCTTCAGACCACGTGTGCGAGCTGTGCGGGTACTCGTTCATCGGTGTGAAGGGCCTCATGTACCACATGAGCAGGAAACACTACTCCGATAGCAAGCAGCACCCTTCAGACCACGTGTGCGAGCTGTGCGGGTACTCGTTCATCGGTGTGAAGGGCCTCATGTACCACATGAGCAGGAAACACTACTCCGATAGCAAGCAGGTCAGTGCTGTGCacactcgccttcggctcgggctcaATGCCGCGTATAAAGCACCCTTCAGACCACGAAACACTACTCCGATAGCAAGCAGGTCAGTGCTGTGCacactcgccttcggctcgggctcaATGCCGCGTATAAAGCACCCTTCAGACCACGTGTGCGAGCTGTGCGGGTACTCGTTCATCGGTGTGAAGGGCCTCATGTACCACATGAGCAGGAAACACTACTCCGATAGCAAGCAGCTGTCGGGGCCTCTCTGCGTGGAGTGCAACATACGGTTTGCGTGCGACGCCGCCTACGAGACACACATGAAAGTGTCCCCCAAACACGCGGCGCCCGGAAGCCGCAAAACAAACGATCCGACTCCTCCAAGGAAATATAATCCTATCAGAGAGAAGGCGAGAAAGAGGAACCAGGACAAGGCCGCTAGTATCGACTGCGAGCTGcTCTCACACGGCCTCACTGTCAACTCACACGGCCTCACTGTCAACACACACGGCCACTCTGTCAACACACACGGCCTCACTGTCAACACACACGGCCACTCTGTCAACACACACGGCCTCACTGTCAACACACACGGCCTCACTGTCAACACACACGGCCACTCTGTCAACACACACGGCCTCACTGTCAACACACTCGGCCACTCTGTCAACTCACACGGCCTCACTGTCAACACACACGGCCACTCTGTCAACACACACGGCCTCACTGTCAACACACACGGCCACTCTGTCAACATACACGGCCTCACTGTCAACACACACGGCCACTCTGTCAACACACACGGCCTCACTGTCAACACACATAGCCACTCTGCCAACACGCTCGTCACTAGGTACGAGTCTCCTTGCGGCATCATGCTGGAGAGCCGGCGCAAGTACTACTGGCACTTCCGGGCGTGCCACCCGCACAGCACGCGCACCAAGTACCCCAGCCCCATGCTCATGTGCGACCAGTGCGGGAAAGCGTTTCACAGCAAGTGCAGCCTCGCCGACCACATGGCGACGCACGGCGGGGAGAGCAAGCCGGAGCAGTGCCACATATGCAGCAAGATGTTCCGCTACAAGGTGACCCTCAAGCGGCACATGCGCCTGCACAGCAACTCCAGCTACCAGTGCGCGCACTGCGCCTACGAGACCACGACCAAGGGCAACTTGAACAGGCACATGGAGACCCATCTCAACCTCCACGAGAGGAAGCTATACGATTGCAAGGAGTGCGGCAAAACGTTCACAACGGTTGTTGCGATGAAGAACCACATGCTTCACGTGCACTTCAAGGTGCCCTACCCCAAGAGAGACCGCCCCTCGAGGCCGCGCGCGCACGCCGCAGACTACGGGCCGTAA
- Protein Sequence
- MESNEVKQSSVQFCMACLDVHGKLCSMSKYMVAFKNITGISLAGAVNFSPMFCSECAQRLINCCKFRDRSLRAYQLLSELLHNNAELSLQTLSSVDRARCQLTSSVVKKTFEPDHCDLHLVHDAGNIFKTYVKNEKIDVPLEFENVNAMSDVKCDLQLVKDDSNTEDDDVIVHSMKECSNRRNPSIECIDYEDLDMDYDDDDNKHEGSLNNLGVPNNCKELREFKISERSPEEQLADLRARQETDTYKRSQYKCTDCYKGFQDENAYNTHMERHTDKYGLLACPICRIRVKLGKDLSKHVGNSHKTLYHCTKCSFVTHQKNSALCHSRWHDGKKYKCQHCEEEFIKPTSYFNHLRIKHPSDHVCELCGSVLCTLAFGSGSMPRIKHPSDHVCELCGYSFIGVKGLMYHMSRKHYSDSKQVSAVHTRLRLGLNAAYKAPFRPRNTTPIASRSVLCTLAFGSGSMPRIKHPSDHVCELCGYSFIGVKGLMYHMSRKHYSDSKQHPSDHVCELCGYSFIGVKGLMYHMSRKHYSDSKQVSAVHTRLRLGLNAAYKAPFRPRNTTPIASRSVLCTLAFGSGSMPRIKHPSDHVCELCGYSFIGVKGLMYHMSRKHYSDSKQLSGPLCVECNIRFACDAAYETHMKVSPKHAAPGSRKTNDPTPPRKYNPIREKARKRNQDKAASIDCELLSHGLTVNSHGLTVNTHGHSVNTHGLTVNTHGHSVNTHGLTVNTHGLTVNTHGHSVNTHGLTVNTLGHSVNSHGLTVNTHGHSVNTHGLTVNTHGHSVNIHGLTVNTHGHSVNTHGLTVNTHSHSANTLVTRYESPCGIMLESRRKYYWHFRACHPHSTRTKYPSPMLMCDQCGKAFHSKCSLADHMATHGGESKPEQCHICSKMFRYKVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMETHLNLHERKLYDCKECGKTFTTVVAMKNHMLHVHFKVPYPKRDRPSRPRAHAADYGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -