Basic Information

Insect: Coenonympha glycerion
Gene Symbol: -
Assembly: GCA_963855885.1
Location: OY979641.1:4663704-4679446[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.74 46 5.4 1.7 1 23 333 355 333 355 0.96

2 16 0.00039 0.024 15.7 2.1 1 23 362 385 362 385 0.96

3 16 0.0012 0.073 14.2 0.3 1 23 416 439 416 439 0.98

4 16 0.0067 0.41 11.8 0.2 1 23 443 466 443 466 0.97

5 16 0.12 7.3 7.9 0.1 3 22 478 497 477 501 0.93

6 16 0.2 12 7.2 0.1 2 23 542 564 541 564 0.95

7 16 3 1.8e+02 3.5 0.8 3 11 579 587 578 606 0.68

8 16 3 1.8e+02 3.5 0.8 3 11 621 629 620 648 0.68

9 16 1.5 93 4.4 0.0 3 11 663 671 662 674 0.88

10 16 1.5 93 4.4 0.0 3 11 738 746 737 749 0.88

11 16 3 1.8e+02 3.5 0.8 3 11 813 821 812 840 0.68

12 16 1.5 93 4.4 0.0 3 11 855 863 854 866 0.88

13 16 0.00025 0.015 16.3 0.4 3 20 930 947 929 950 0.93

14 16 0.0025 0.15 13.2 2.6 1 23 956 978 956 978 0.98

15 16 2.7e-05 0.0016 19.4 1.3 1 23 985 1007 985 1007 0.97

16 16 0.0022 0.14 13.3 0.5 1 23 1012 1035 1012 1035 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.74	46	5.4	1.7	1	23	333	355	333	355	0.96
2	16	0.00039	0.024	15.7	2.1	1	23	362	385	362	385	0.96
3	16	0.0012	0.073	14.2	0.3	1	23	416	439	416	439	0.98
4	16	0.0067	0.41	11.8	0.2	1	23	443	466	443	466	0.97
5	16	0.12	7.3	7.9	0.1	3	22	478	497	477	501	0.93
6	16	0.2	12	7.2	0.1	2	23	542	564	541	564	0.95
7	16	3	1.8e+02	3.5	0.8	3	11	579	587	578	606	0.68
8	16	3	1.8e+02	3.5	0.8	3	11	621	629	620	648	0.68
9	16	1.5	93	4.4	0.0	3	11	663	671	662	674	0.88
10	16	1.5	93	4.4	0.0	3	11	738	746	737	749	0.88
11	16	3	1.8e+02	3.5	0.8	3	11	813	821	812	840	0.68
12	16	1.5	93	4.4	0.0	3	11	855	863	854	866	0.88
13	16	0.00025	0.015	16.3	0.4	3	20	930	947	929	950	0.93
14	16	0.0025	0.15	13.2	2.6	1	23	956	978	956	978	0.98
15	16	2.7e-05	0.0016	19.4	1.3	1	23	985	1007	985	1007	0.97
16	16	0.0022	0.14	13.3	0.5	1	23	1012	1035	1012	1035	0.92

Sequence Information

Coding Sequence: ATGGTATGCTTGGACACAGCAAGCAAACTGTATCAGTTGGACAAGTTTAACCTGGCTGAGACTTATGTTAATGTAACTGGAATCTCGTTGTGCACGGATTTGAACTTTGCTTTGAAGCTGTGTGCGGAGTGTGCTCAGAGACTGTTAAACTGCAATACATTCAGAAACAAGAGTTGGAGTGCACATAATTTATTGTTAGACTTAGTCAAGAAGCATGATTTTTTAACAACACATCATATAAAGTCAATAAACCGTGAGATTCACCAGCTGTCCTCTAGTTTAGTGAAGAGATTGTACCAACCCGACCATTGCGACCTCTATCTGGTTGACGATAAGGAAGACAAGCTGTATGATGTTCCAGTGGTTAAAGATGAAATCGAATTGAGACATAATGACGATTTTAGTTATAGGAATACTAGTGCCAATAATCGAGAGCTGGAACTCTCAGAGCCGAAACAGGAATCGCCGTCTTTAGAAATCAAGATCGACGACGAATTTTCAAATGGAAATGAACTTGCAATGTTAGAAGGTTTCGGTAACTACACGGTAGTCGCCAATGACTTTGATGCCGATCCCTCTGGAGACTTGTCAGTTAGTGACGCGGATAGCAAATATGGTATGCTGACAGTCGATGAGGGTATACAGAAAAAGAAGGCAAAGAGGTTAAAAGAGGGTAGAGAGGACTCGTTGAAAAGGAAAAGGATTAGTAAAAAATCTGTGAAAAGACTTAGCAGTAAAGGTTCCATAAAGAAGATTAACagtaaaactaaagaaaaatcaAGCAAAGAACGTACAAAAGCCAAAGTTAAACTCAAAAACGGCATACTCAAGCTTAAGAAGAACAGAAAAAAGGTTGCCAAGTCAAAATCCGACGGCTCTCAAGTCAAACTAACTTCAGAGGAAAAGAAATTGTTCAAGAAGACTGTGTTGACCTATGAAGAGCAGTTGGCCGAGGTGCAGAGTAGAAAAGAAAGTGATAACTATTTGAACGCTCGCCACAAGTGTACAAAGTGTTATAGAGGCTTCTTGGACGTAGACGCTTATAATTTACATATGGTTAAGCATACTAATAAATACGGTCCGTTCGAGTGCGACATCTGCGGGCTGCACAGCAAGAGCCGCAACAACCTGTGTCGGCACATCGCCGTCAACCACAGCGTCCGATACAGCTGCACgctctgtctgtttgtcaccaTGCATGTAGGCACGGCGAAGTCTCACGAGCGCTGGCACAAAGGCTCCAAGTTCAAATGTCCGGAATGCGACTTAGAATTCGGGATAAGGTCGTCGTACCTGTCGCACCTCCGCATCAAGCACCCGTCGGACTACGCGTGCAGCATCTGCGGGTTCTCGTTCATCGGCGAGCGCGGCATCAAGCTGCACATGAACAAGAAGCACCGCTTCGACGTGCTGAACCCCGACGGGCCGCTGTGCAAGGCGTGCAACATCCGCTTCGCGTCGGAGGCCGCGTACACCCAGCACATGAAGGTGTCGCCCAAGCACAACATCGGCCAAAAACGTGAACGAAACGACCCGCTGATAAAAACCATCGGTTATAGCAAACGACCTTGGAGTGGCAAGTCCAAGAAAGAGGAACCTGACTCTGTGGACTCGGAGCCTGTTGAATGTGAACAGTGCGGCATTCCGCTGAAGGACTACTGGATGTACACGCAGCACTTCAAGAAGGCGCACCCCGACAAGAACCGCACCAAGTACCACCGCCCCAAGCTGCTGTGCGAGCTCTGCGGCAAGGTGTTCAACTGTGGCACTCCACTGAAGGACTACTGGATGTACACGCAGCACTTCAAGAAGGCGCACCCCGACAAGAACCGCACCAAGTACCACCGCCCCAAGCTGCTGTGCGAGCTCTGCGGCAAGGTGTTCAACTGTGGCACTCCACTGAAGGACTACTGGATGTACACGCAGCACTTCAAGAAGGCGCACCCCGACAAGAACCGCACCAAGTACCACCGCCCCAAGCTGCTGTGCGAGCTCTGCGGCAAGGTGTTCAACGTGAGCGCACCCCGACAAGAACCGCACCAAGTACCACCGCCCCAAGCTGCTGTGCGAGCTCTGCGGCAAGGTGTTCAACGTGAGTATGTTTTGCTGCAGTGTGGCACTCCACTGAAGGACTACTGGATGTACACGCAGCACTTCAAGAAGGCGCACCCCGACAAGAACCGCACCAAGTACCACCGCCCCAAGCTGCTGTGCGAGCTCTGCGGGAAGGTGTTCAACGTGAGCGCACCCCGACAAGAACCGCACCAAGTACCACCGCCCCAAGCTGCTGTGCGAGCTCTGCGGCAAGGTGTTCAACGTGAGTATGTTTTGCTGCAGTGTGGCACTCCACTGAAGGACTTCTGGATGTACACGCAGCACTTCAAGAAGGCGCACCCCGACAAGAACCGCACCAAGTACCACCGCCCCAAGCTGCTGTGCGAGCTCTGCGGGAAGGTGTTCAACTGTGGCACTCCACTGAAGGACTACTGGATGTACACGCAGCACTTCAAGAAGGCGCACCCCGACAAGAACCGCACCAAGTACCACCGCCCCAAGCTGCTGTGCGAGCTCTGCGGCAAGGTGTTCAACGTGAGCGCACCCCGACAAGAACCGCACCAAGTATCACCGCCCCAAGCTGCTGTGCGAGCTCTGCGGGAAGGTGTTCAACGTGAGTATGTTTTGCTGCAGTGTGGCACTCCACTGAAGGACTACTGGATGTACACGCAGCACTTCAAGAAGGCGCACCCCGACAAGAACCGCACCAAGTACCACCGCCCCAAGCTGCTGTGCGAGCTCTGCGGGAAGGTGTTCAACAACGAGGCGCACCTGCGCTACCACATGCCGGTGCACTCGGAGCACAAGCAGTTCAAGTGCGAGGTCTGCAGCAAGACCTTCCACTCCATCCTCAACCTCAAGAGCCACGTGACCATGCACAGCGAGACGCGGCCCTCCTACGCCTGCGACTTCTGCGGCAAGACCTTCGCCTACCAGTCCAACAAGTACCGCCACATGACGATACACAAAGGCATTAAGTTCAGCTGCGAGATATGTGACAAGAGCTTTAACACGGCGCCGGAGAGGTCCATCCACGTCCAGCACGTACACATGAAAGTGCCGTGGCCCAAGCGGAACCGCGGGCCCCGCAACAAGCCGCGCCCGCTCATGCCGCAGCCGGACCTCATGTGA
Protein Sequence: MVCLDTASKLYQLDKFNLAETYVNVTGISLCTDLNFALKLCAECAQRLLNCNTFRNKSWSAHNLLLDLVKKHDFLTTHHIKSINREIHQLSSSLVKRLYQPDHCDLYLVDDKEDKLYDVPVVKDEIELRHNDDFSYRNTSANNRELELSEPKQESPSLEIKIDDEFSNGNELAMLEGFGNYTVVANDFDADPSGDLSVSDADSKYGMLTVDEGIQKKKAKRLKEGREDSLKRKRISKKSVKRLSSKGSIKKINSKTKEKSSKERTKAKVKLKNGILKLKKNRKKVAKSKSDGSQVKLTSEEKKLFKKTVLTYEEQLAEVQSRKESDNYLNARHKCTKCYRGFLDVDAYNLHMVKHTNKYGPFECDICGLHSKSRNNLCRHIAVNHSVRYSCTLCLFVTMHVGTAKSHERWHKGSKFKCPECDLEFGIRSSYLSHLRIKHPSDYACSICGFSFIGERGIKLHMNKKHRFDVLNPDGPLCKACNIRFASEAAYTQHMKVSPKHNIGQKRERNDPLIKTIGYSKRPWSGKSKKEEPDSVDSEPVECEQCGIPLKDYWMYTQHFKKAHPDKNRTKYHRPKLLCELCGKVFNCGTPLKDYWMYTQHFKKAHPDKNRTKYHRPKLLCELCGKVFNCGTPLKDYWMYTQHFKKAHPDKNRTKYHRPKLLCELCGKVFNVSAPRQEPHQVPPPQAAVRALRQGVQREYVLLQCGTPLKDYWMYTQHFKKAHPDKNRTKYHRPKLLCELCGKVFNVSAPRQEPHQVPPPQAAVRALRQGVQREYVLLQCGTPLKDFWMYTQHFKKAHPDKNRTKYHRPKLLCELCGKVFNCGTPLKDYWMYTQHFKKAHPDKNRTKYHRPKLLCELCGKVFNVSAPRQEPHQVSPPQAAVRALREGVQREYVLLQCGTPLKDYWMYTQHFKKAHPDKNRTKYHRPKLLCELCGKVFNNEAHLRYHMPVHSEHKQFKCEVCSKTFHSILNLKSHVTMHSETRPSYACDFCGKTFAYQSNKYRHMTIHKGIKFSCEICDKSFNTAPERSIHVQHVHMKVPWPKRNRGPRNKPRPLMPQPDLM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -