Cgly021014.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979649.1:10728277-10746426[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.4 3.3e+02 2.7 6.4 1 23 251 273 251 273 0.97 2 13 0.75 46 5.4 0.3 2 23 293 313 293 313 0.96 3 13 0.39 24 6.3 4.9 1 23 321 343 321 343 0.96 4 13 0.75 46 5.4 0.6 1 23 367 390 367 390 0.95 5 13 6.7e-05 0.0041 18.1 0.8 2 23 401 422 400 422 0.97 6 13 0.0016 0.099 13.8 1.4 1 23 428 450 428 450 0.95 7 13 0.00019 0.012 16.7 2.4 1 23 456 478 456 478 0.96 8 13 5.5e-06 0.00034 21.5 2.9 1 23 484 506 484 506 0.97 9 13 0.0057 0.35 12.0 0.0 1 21 512 532 512 533 0.95 10 13 0.0057 0.35 12.0 0.0 1 21 564 584 564 585 0.95 11 13 0.0057 0.35 12.0 0.0 1 21 616 636 616 637 0.95 12 13 0.0057 0.35 12.0 0.0 1 21 668 688 668 689 0.95 13 13 0.0057 0.35 12.0 0.0 1 21 720 740 720 741 0.95
Sequence Information
- Coding Sequence
- ATGGACAGTATTTGTCGTCTGTGCTGTTCCACGAAGTTCGTTAATAATCACATTTTCGACGATGAGAACGCTCTGCATATAAAAATGTCACTATATTTGCCAATAAAGGTATTTAGGGGCGATCAGCTTCCTCAGAAGATCTGCGACCGTTGCAGTTGCAAAGTGAACGATTTCTACCAGTTCTGCAACGAAACTATCGAAGTTCAAAACAGATTGAAGAGTCTATTACAAGCAAACATTCCAGTCAGTCAGTCTGTGGACCTCACACTCATAAAACAGGATGCAGAGTCTCCCACGCCTCAGCCAGTATTCCATGAGAAGAgcacacagacagacacaccAGCAGCCAGCAACGTGAAGAAGGAGCCAGAGTGCCCGCCTGCTGCTGTGGTCACACCCAGTGATATCAAGAAAGAGAGTTATGACTCTGATGATTTTGCTTCACAGGATTTGCCTACGGATAACAGTGAAGATGAGTTGCTAATAGACATTAAGAAGAAGAAACGAGGTAGAAAGCCAGGCACAAAGAATGGAGAAGTTAAAGAACTTAAAAAAGGCAGAAAGAAAAAGGAGAAAAATCTCTTTTGGGATCAAATGCTCCCAGCAAAGGGTAACGGAGAGGTGCTCAGTTTCACGGACACGGTGGTGGTGAAGCAAGAGATAGACCGGGAGATCACGGCGATGCGCTCGGACTACGAGGCGGACCTGGGCTCGGTGCTGCTGGTGAAGTGCAAGCAGGAGCCCGCGCTGTACTGCTGCTGCATGTGCTTCGAGGAGTGCGGCTCCCGGCCAGAACTGCTGCGACACTACCAGTCGCACGGTGCGCCAGCGCAGGCGACGGAGctggcgccgccgcccgcgctggGCGACTCGCCGCGCTGCCTGCGCTGTCAGAAGGTGGTGCAGGCGTCGCAGTGGGCGGAGCACTGGCGGCGCCACTACGCGCGCGACGTGCGGCCCTACCACTGCGCCGTGTGCTTCCGCGCCTTCCGCGACCACCACCAGATACTCAAACACGGGTTGTCGCACACTGTGGAGGAGCTACGCGCGGACAACGACGGCACGGAGGAACCAAACGCGGACGTGTCGCAGAAGCGTTTCGCGTGCGACGTGTGCGCTGAGGGCTTCGTCTATATGAGGTGCCTGCTGTCGCACCGCACGCGCGCGCACCCcgaggcggcggcgcgcgcgctgcggctGCGCTGCGCGGTGTGCGCGCGCACGTTCGCGCACGCCAACTCGCTGCGGCGGCACCTGCGCGTGCACTCGGGCGAGCGCAACTTCCTGTGCAGCGTGTGCGGCAAGGCGCTGTCGTCGCGCGAGCACCTCAAGTTCCACCTGCGCATCCACTCGGGCTACAAGCCGCACGCGTGCGCCACGTGCGGCAAGGCCTTCGTCAAGAAGTGCAACCTCACGCTGCACGAGCGCGTGCACTCGGGCGAGAAGCCGCACGTGTGCTCGCACTGCGGCAAGGCCTTCTcgcagcgctccacgctcgtcatacacgagagGTACCACAGCGGCGCGCGGCCGTACTCGTGCGAGCTGTGCGGGCGCGGCTTCGTGGCCAAGGGGCTGCTGTCCATGCACCTCAAGAGCGCGTGCGTCAACCTGCCCGCGCCCACCCACACCAGCCTCCCAGCGGCCGCCCTGGTGCGGTGCCACAGGTACCACAGCGGCGCGCGGCCGTACTCGTGCGAGCTGTGCGGGCGCGGCTTCGTGGCCAAGGGGCTGCTGTCCATGCACCTCAAGAGCGCGTGCGTCAACCTGCCCGCGCCCACCCACACCAGCCTCCCAGCGGCCGCCCTGGTGCGGTGCCACAGGTACCACAGCGGCGCGCGGCCGTACTCGTGCGAGCTGTGCGGGCGCGGCTTCGTGGCCAAGGGGCTGCTGTCCATGCACCTCAAGAGCGCGTGCGTCAACCTGCCCGCGCCCGCCCACGCCAGCCTCCCAGCGGCCGCCCCGGTGCGGTGCCACAGGTACCACAGCGGCGCGCGGCCGTACTCGTGCGAGCTGTGCGGGCGCGGCTTCGTGGCCAAGGGGCTGCTGTCCATGCACCTCAAGAGCGCGTGCGTCAACCTGCCCGCGCCCGCCCACGCCAGCCTCCCAGCGGCCGCCCCGGTGCGGTGCCACAGGTACCACAGCGGCGCGCGGCCGTACTCGTGCGAGCTGTGCGGGCGCGGCTTCGTGGCCAAGGGGCTGCTGTCCATGCACCTCAAGAGCGCGTGCGTCAACCTGCCCGCGCCCACCCACACCAGTCTCCCAGCGGCCGCCCTGGTGCGGTGCCACAGGTAA
- Protein Sequence
- MDSICRLCCSTKFVNNHIFDDENALHIKMSLYLPIKVFRGDQLPQKICDRCSCKVNDFYQFCNETIEVQNRLKSLLQANIPVSQSVDLTLIKQDAESPTPQPVFHEKSTQTDTPAASNVKKEPECPPAAVVTPSDIKKESYDSDDFASQDLPTDNSEDELLIDIKKKKRGRKPGTKNGEVKELKKGRKKKEKNLFWDQMLPAKGNGEVLSFTDTVVVKQEIDREITAMRSDYEADLGSVLLVKCKQEPALYCCCMCFEECGSRPELLRHYQSHGAPAQATELAPPPALGDSPRCLRCQKVVQASQWAEHWRRHYARDVRPYHCAVCFRAFRDHHQILKHGLSHTVEELRADNDGTEEPNADVSQKRFACDVCAEGFVYMRCLLSHRTRAHPEAAARALRLRCAVCARTFAHANSLRRHLRVHSGERNFLCSVCGKALSSREHLKFHLRIHSGYKPHACATCGKAFVKKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVIHERYHSGARPYSCELCGRGFVAKGLLSMHLKSACVNLPAPTHTSLPAAALVRCHRYHSGARPYSCELCGRGFVAKGLLSMHLKSACVNLPAPTHTSLPAAALVRCHRYHSGARPYSCELCGRGFVAKGLLSMHLKSACVNLPAPAHASLPAAAPVRCHRYHSGARPYSCELCGRGFVAKGLLSMHLKSACVNLPAPAHASLPAAAPVRCHRYHSGARPYSCELCGRGFVAKGLLSMHLKSACVNLPAPTHTSLPAAALVRCHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -