Cgly002660.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979627.1:16758943-16764340[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.2 75 4.7 4.9 2 23 109 130 108 130 0.92 2 11 0.027 1.7 9.9 0.4 2 23 146 167 145 167 0.96 3 11 5.7e-07 3.5e-05 24.6 1.8 1 23 173 195 173 195 0.99 4 11 4.6e-05 0.0028 18.6 0.2 3 22 202 221 200 221 0.94 5 11 5.7e-07 3.5e-05 24.6 1.8 1 23 268 290 268 290 0.99 6 11 8.5e-05 0.0052 17.8 0.5 3 21 297 315 295 316 0.95 7 11 0.15 9.1 7.6 0.6 8 23 315 330 315 330 0.94 8 11 4.6e-05 0.0028 18.6 0.2 3 22 337 356 335 356 0.94 9 11 2.9e-05 0.0018 19.3 0.6 2 22 412 432 411 432 0.95 10 11 0.72 44 5.4 0.2 1 20 437 456 437 457 0.94 11 11 0.00051 0.031 15.4 3.6 3 23 469 490 468 490 0.96
Sequence Information
- Coding Sequence
- ATGCACGCGCTGCACTTGCACATCATCTCGCACGTGCGGGACAACTTCCCGCGCATCTCCGTGATCACGAGCGAGGACGACGTGGAGAGGCAGCAGCGCACGCACCAGTGCCAGACGTGCTCCGAGCCGGTCGACGCGGCCGACTGCTTCGACCACTGGGAGAGGCACCTCGACGTCAACGGCGACGCCGCGCGCCCGGAGAAGAAAGACTTCGTGCCGAAACTGCGGATAGGAAGCGAGGGAGACTTGAAAAGGATGATACTGCTGCTGCAAGGTATAAACCCAGACTCGCCGGATGAAAAGGTGTATATGCATCAGCTGAAGTCCTGTGAGAAGTGCAAGAGGAACTTCGCGCGCAGGAACGAGTGCAAGCGGCACTTCATCGAGCACCTGCTGATGGACGCGGTGCAGCACCGCCAGCGGCACGGCTTCCTCAAGTGCCAGATATGCGCCATGGAGTTCATAAGCGGCGAAAGGTATAAGCGACACATGCGCGACCACGGCAACCTGCCGCTGTACAAGTGCGACCTGTGCGACAAGGCGTTCAGTGACTCGAGCAACTTCAGCAAGCACAAGAAGGTGCACAACCTGTCGGTGGTCATCTGCGACATCTGCAACAAGAAGTTCACCTCCAAGCGATTCCTCGAGCAGCACATCAGGGTACGTAGTGTTGGCACCAGCGGCACGCGGCCACGGCAACCTGCCGCTGTACAAGTGCGACCTGTGCGACAAGGCGTTCAGCGACTCGAGCAACTTCAGCAAGCACAAGAAGCGGCACGCGGCCACGGCAACCTGCCGCTGTACAAGTGCGACCTGTGCGACAAGGCGTTCAGTGACTCGAGCAACTTCAGCAAGCACAAGAAGGTGCACAACCTGTCGGTGGTCATCTGCGACATCTGCAACAAGAAGTTCACCTCCAAGCGCTTCCTCGAGCAGCACATCAGGGCGTTCAGCGACTCGAGCAACTTCAGCAAGCACAAGAAGGTGCACAACCTGTCGGTGGTCATCTGCGACATCTGCAACAAGAAGTTCACCTCCAAGCGCTTCCTCGAGCAGCACATCAGGGTACGTAGTGTTGGCACCAGCGGCACGCGGCCACGGCAACCTGCCGCTGTACAAGTGCGACCTGTGCGACAAGGCGTTCAGCGACTCGAGCAACTTCAGCGAGCTCAAGAAGTCTGTGTATTGATTGGCCGGCGCCCGCTCCAGCTGCACGAGGTGACGGAGCCGCTGGTGTGCAAGGAGTGCGGCAAGCTGTTCTACTCGGAGTCCAGCTACCGGCGGCACATGCGCAAGGGCCGCGCGCAGTTCAAGTGCAAGGTGTGCTACATGCAGTTCAACGCCGTCAGGAACATGTGGGACCACATGTGGGAGGAACACAGGGTGAGGAAGTTTATCGCGGACTGTCCTATCTGCCACAAGTCGTTCCGCAAGCACCAAGACGTCAAGAAGCACGTCCGCGAGGACCACAACCGCTTCTACAAGTACAAAGCCAGCAAAATAGTGCCGCGACAAGGGGCGAACAGGCGACGGCCGCGCGCTGAAAGCGTGGCCGATGTAGTGGTGGTCGCCCAAGACGAGGGAGGTACGGAAGTCCGCAAATGTGGCAACAGCACGCCGAAGCAAGCGAGAGCTGAGAAACGTAAACGGTTTCCCGTATTCCAACGTGTGATTGCGTTACAGGACCCCCGGACACTAGGGACGCCTGAAACGATAACCCGTCCAGCGCAGGAGACAGCCGGTCCAGTGCAGGGGACTGCCAGTCCAGTGCAGGGGACTGCCAGTCGAGTACCGGGGACTGCTAGTCTAGTACAAAATACTGTGGTTAAAACACACAGCACGGCATCAAAACTAAGAAAAACAAGGAAACGGTTACGTGAAGCCCCCTGTGTTATTTCATTACAAGACCCGCGGACAGAAGGAACATCTGAAACGATAACCAGTCCAGTGCAGGGGACTGCCAGTCTAGTACAGGGGACTGCCAGTCTAGTACAGGGGACTGCCAGTCTAGTACAGGGGACTGCTAGTTTAATACAGGGGACTGCCAGTTCAGTACAGGGGACTGCCAGTCCAGTACTGGAGACTGTGGTTAAAACTGAGCCTGTGGATTGCTAA
- Protein Sequence
- MHALHLHIISHVRDNFPRISVITSEDDVERQQRTHQCQTCSEPVDAADCFDHWERHLDVNGDAARPEKKDFVPKLRIGSEGDLKRMILLLQGINPDSPDEKVYMHQLKSCEKCKRNFARRNECKRHFIEHLLMDAVQHRQRHGFLKCQICAMEFISGERYKRHMRDHGNLPLYKCDLCDKAFSDSSNFSKHKKVHNLSVVICDICNKKFTSKRFLEQHIRVRSVGTSGTRPRQPAAVQVRPVRQGVQRLEQLQQAQEAARGHGNLPLYKCDLCDKAFSDSSNFSKHKKVHNLSVVICDICNKKFTSKRFLEQHIRAFSDSSNFSKHKKVHNLSVVICDICNKKFTSKRFLEQHIRVRSVGTSGTRPRQPAAVQVRPVRQGVQRLEQLQRAQEVCVLIGRRPLQLHEVTEPLVCKECGKLFYSESSYRRHMRKGRAQFKCKVCYMQFNAVRNMWDHMWEEHRVRKFIADCPICHKSFRKHQDVKKHVREDHNRFYKYKASKIVPRQGANRRRPRAESVADVVVVAQDEGGTEVRKCGNSTPKQARAEKRKRFPVFQRVIALQDPRTLGTPETITRPAQETAGPVQGTASPVQGTASRVPGTASLVQNTVVKTHSTASKLRKTRKRLREAPCVISLQDPRTEGTSETITSPVQGTASLVQGTASLVQGTASLVQGTASLIQGTASSVQGTASPVLETVVKTEPVDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -