Cgly024219.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979654.1:1684763-1700061[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0095 0.58 11.4 1.3 1 23 467 489 467 489 0.98 2 21 0.013 0.8 10.9 2.7 1 23 496 519 496 519 0.97 3 21 0.013 0.8 10.9 2.7 1 23 547 570 547 570 0.97 4 21 0.013 0.8 10.9 2.7 1 23 598 621 598 621 0.97 5 21 0.013 0.8 10.9 2.7 1 23 649 672 649 672 0.97 6 21 0.013 0.8 10.9 2.7 1 23 700 723 700 723 0.97 7 21 0.013 0.8 10.9 2.7 1 23 751 774 751 774 0.97 8 21 0.85 52 5.2 3.8 1 23 778 800 778 800 0.98 9 21 0.0018 0.11 13.6 1.8 2 23 806 828 805 828 0.97 10 21 0.027 1.7 9.9 0.1 2 23 833 855 832 855 0.95 11 21 0.027 1.7 9.9 0.1 2 23 862 884 861 884 0.95 12 21 0.027 1.7 9.9 0.1 2 23 933 955 932 955 0.95 13 21 0.027 1.7 9.9 0.1 2 23 962 984 961 984 0.95 14 21 0.027 1.7 9.9 0.1 2 23 991 1013 990 1013 0.95 15 21 0.027 1.7 9.9 0.1 2 23 1020 1042 1019 1042 0.95 16 21 0.027 1.7 9.9 0.1 2 23 1049 1071 1048 1071 0.95 17 21 1.5 92 4.4 0.0 2 22 1084 1104 1084 1108 0.90 18 21 2.7 1.6e+02 3.7 3.1 2 23 1137 1158 1136 1159 0.94 19 21 0.0021 0.13 13.4 1.8 3 23 1176 1196 1174 1196 0.97 20 21 1.7e-05 0.001 20.0 1.1 2 23 1203 1224 1202 1224 0.97 21 21 0.0013 0.079 14.1 0.5 1 20 1231 1250 1231 1250 0.95
Sequence Information
- Coding Sequence
- atgagGTGTTGTGTGCCGTTTTGTGTAAATAATTCAGAAATAATGCCTGACCCGCAAAATGTTACTTTCCATAGGTTGCCCACTGAAGCTTTGCGGCACGCTGCCTGGCTCGAGGCTCTGGGCATTCAAAAGGAAAATGAGTCCCACAAAGTTCTGTTTGTTTGCTCTCTGCATTTCAAAGAATCAGACTTCTATACTACCAAAGGAGGGCAACGGGCGGTTCAGAGGAGTGGGGTACCAAAAACTGAACAGGTGTGCATTATATGCCTGGATACTGACAGAAAACTGTACTCTCTGAACTATTTCAATTTGGACGCAGCTTACGAGAAGATTACTGGGATATCTCTAAAAACATTCAAGATCATCCTATCGCCGAAAGTTTGCTCGGAATGTGGCCAGCGCTTGATCAACTTCGAGAAGTTCAGAGACAAGAGCTTGCGAGCAAACATGCTGTTGCTTGAACTGAGTAAGAGAGATGATCTGCTAAGGATACAGaacataaaatcaataaacaGAAAGAAATATAAACTAAAATCAAATCTGACCAAAATCATATTCAAACCAAACTATTACGACTTCACTATGGTATGGAATGAAGacaaaaacttgaataatgttaaATTAGAGAAAAGAGACAACAAGAACATTAAAACGGAGAACAGAGAAAATAAGGACAAAAACATTAAGGTTGAGGATATAGTCTATGGTACGGCTGAAGTGAAAAATGAGCTGTCAAAAGTGGCAGTTGTTGTGCCGCCTAAAGAGGAAGGTGCAAATGACATCGCCAGTGATGAAGAGTTCTTACACGACGACATAGACAATGATAACTTTTTAAATGGGGAAATGGAAAAGGTCATACACAATGACAGACTCACCGCAGACCCCGCAAATATAAATAACGTTTACAAAACCGTCAAAATTTTCAAACAGGGCGTAGAAATCGACGTGGAATTCTCAAGCGATGACGTCACAAACTTCAATATGGACATCCCAGTCGATGTTGACAGAGATGATAGTCTCCCGACTGAGAATGTCAATAATGACATTTATCCGCTAAACGATGACATAGATCTCGACTTTCCGGATGACAATGACATGGGCTTGGATCGCACAAGTGACAATGGGAGTGACATCGAGTTTGTCGACCAGGCCCCTGTCAAGGCGTGTAAGAAATCTGTCAAAAGTGTCAGGAGAAAGAAAAGTGTCAATAAATATGACATGGAAGCAAAAGCGGCTGTCAAAAGCAGGAAAAGGACGAAACCTCTTCAGGGGCGGTATCTGAAGAGAAAGACGCCAACTGGGGATATGGAGTTGTTTAAAGTGACGGTTTTGACTTATGAGGAACAGGTGGCAGACATTCAATGCAAGAAAGACACTCCTCTGTACAAAAATTCAACGTACAAATGCACATACTGCTTCAAAGGATACCAGTACGAGGACGCGTACGAGTCGCACATGGAGCAGCACACGGACAAATACGGCGTGTTCGAGTGCGCGATCTGCGGCATTCACACCAAGAGTCGACAGAAGCTGCTGCATCATCTGAACATGACTCACATAGTGCGATACACCTGCACCAAATGCCCGTTCTTCACGAGGCACAGTACGTTGATACTTTGTGTTCATAAATACGGCGTGTTCGAGTGCGCGATCTGCGGCATTCACACCAAGAGTCGACAGAAGCTGCTGCATCATCTGAACATGACTCACATAGTGCGATACACCTGCACCAAATGCCCGTTCTTCACGAGGCACAGTACGTTGATACTTTGTGTTCATAAATACGGCGTGTTCGAGTGCGCGATCTGCGGCATTCACACCAAGAGTCGACAGAAGCTGCTGCATCATCTGAACATGACTCACATAGTGCGATACACCTGCACCAAATGCCCGTTCTTCACGAGGCACAGTACGTTGATACTTTGTGTTCATAAATACGGCGTGTTCGAGTGCGCGATCTGCGGCATTCACACCAAGAGTCGACAGAAGCTGCTGCATCATCTGAACATGACTCACATAGTGCGATACACCTGCACCAAATGCCCGTTCTTCACGAGGCACAGTACGTTGATACTTTGTGTTCATAAATACGGCGTGTTCGAGTGCGCGATCTGCGGCATTCACACCAAGAGTCGACAGAAGCTGCTGCATCATCTGAACATGACTCACATAGTGCGATACACCTGCACCAAATGCCCGTTCTTCACGAGGCACAGTACGTTGATACTTTGTGTTCATAAATACGGCGTGTTCGAGTGCGCGATCTGCGGCATTCACACCAAGAGTCGACAGAAGCTGCTGCATCATCTGAACATGACTCACATAGTGCGATACACCTGCACCAAATGCCCGTTCTTCACGAGGCACAGgaacaCAGCCAAGTCTCACGCGCGCTGGCACAACGGAATCAAGTCCAAATGCAAGTACTGTGATGCGGAGTTCAGTAAAATGACGTCACTGCTGTCTCACCTGCGCAAGAAGCACCCGTCCGACCAGGTGTGCACCCTGTGCGGGtactccttcatcggcgagagGGGGCTCGCGTTGCACGTGCAGAAGAAACACCAGTTTGACGACCCGCAGGTGTGCACCCTGTGCGGGtactccttcatcggcgagagGGGGCTCGCGTTGCACGTGCAGAAGAAACACCAGTTTGACGACCCGCAGGTGAGCGTGCGGCGGTCGCGGTCACAGCGCAGTGACGTCACTGCTGTCTCACCTGCGCAAGAAGCACCCGTCCGACCAGTGACGTCACTGCTGTCTCACCTGCGCAAGAAGCACCCGTCCGACCAGGTGTGCACCCTGTGCGGGtactccttcatcggcgagagGGGGCTCGCGTTGCACGTGCAGAAGAAACACCAGTTTGACGAGCCGCAGGTGTGCACCCTGTGCGGGtactccttcatcggcgagagAGGGCTCGCGTTGCACGTGCAGAAGAAACACCAGTTTGACGACCCGCAGGTGTGCACCCTGTGCGGGtactccttcatcggcgagagGGGGCTCGCGTTGCACGTGCAGAAGAAACACCAGTTTGACGACCCGCAGGTGTGCACCCTGTGCGGGtactccttcatcggcgagagGGGGCTCGCGTTGCACGTGCAGAAGAAACACCAGTTTGACGAGCCGCAGGTGTGCACCCTGTGCGGGtactccttcatcggcgagagGGGGCTCGCGTTGCACGTGCAGAAGAAACACCAGTTTGACGACCCGCAGGTGGAGCCCGCGGGTCCCACGTGCGCAGCGTGCGGGATACGCTTCGCGAACGACGCTGCGTACGAGCAGCACGTGCGCGTCTCGCCCAAACACGCCGCGCCCGATGCCCTTGAGCCCAACGAGCCGCGGTGGCACAAACCCAAAGGTCCTCCGCGACGCAAGGGCGACCAGACAGTCACGTGCGAGCAgTGCGGCATGACTCTGAAAGGGTTCAAGTACTACACGTACCACTTCAAGAGGCACCACCGCGACAAGATACGCACGCAGTTCGCCAACGCGCACGAGCGCTGTCTGTGTGAGCTGTGCGGCCGGGTGCTGCAGCACTCGAGCGCCCTCAAGAGCCACATGCTGGTCCACACGGGCAAGAAGGACGTGCAGTGCTCCGTGTGCGACAAGCGCTTCTACTACCAGCGGCAGCTGACCATGCACATGGACACCCACAACGAGGCCAAGCGCACCTTCGACTGCCCCGTGTGCGCGCGCAGCTTCACCAGCAAGTCCAACAAGAACAGGCACCTGTGGGTGAGTGCGGAGACTAGGAGCACAGTTAGACTGGGAGCTATTCTCGACTCAATGATGACAGTAAGTGGACTCACCAACCTCGTGCCACTTCCTGACGCTCTGGTAATGTTGATCGAGGTAACGGAGACTAGGAGCGCAGTTAGACTGGGAGCTATTCTCGACTCAGTGATGACAGTAAGTGGACTCACCGACATCCTGCCACTTCCTGGTGCTCTGGTAATGTTGATCGAGGTAACGGAGACTAGGAGCGCAGTTAGACTAGGAGCTATTCTAGACTCAGTGATGACTGATGACAGCAAGTGGACACACCGACCTCCTGCCACTTCCTGGCGCTCTGGTAATGTTGATCGAGGTAACGGAGACTAG
- Protein Sequence
- MRCCVPFCVNNSEIMPDPQNVTFHRLPTEALRHAAWLEALGIQKENESHKVLFVCSLHFKESDFYTTKGGQRAVQRSGVPKTEQVCIICLDTDRKLYSLNYFNLDAAYEKITGISLKTFKIILSPKVCSECGQRLINFEKFRDKSLRANMLLLELSKRDDLLRIQNIKSINRKKYKLKSNLTKIIFKPNYYDFTMVWNEDKNLNNVKLEKRDNKNIKTENRENKDKNIKVEDIVYGTAEVKNELSKVAVVVPPKEEGANDIASDEEFLHDDIDNDNFLNGEMEKVIHNDRLTADPANINNVYKTVKIFKQGVEIDVEFSSDDVTNFNMDIPVDVDRDDSLPTENVNNDIYPLNDDIDLDFPDDNDMGLDRTSDNGSDIEFVDQAPVKACKKSVKSVRRKKSVNKYDMEAKAAVKSRKRTKPLQGRYLKRKTPTGDMELFKVTVLTYEEQVADIQCKKDTPLYKNSTYKCTYCFKGYQYEDAYESHMEQHTDKYGVFECAICGIHTKSRQKLLHHLNMTHIVRYTCTKCPFFTRHSTLILCVHKYGVFECAICGIHTKSRQKLLHHLNMTHIVRYTCTKCPFFTRHSTLILCVHKYGVFECAICGIHTKSRQKLLHHLNMTHIVRYTCTKCPFFTRHSTLILCVHKYGVFECAICGIHTKSRQKLLHHLNMTHIVRYTCTKCPFFTRHSTLILCVHKYGVFECAICGIHTKSRQKLLHHLNMTHIVRYTCTKCPFFTRHSTLILCVHKYGVFECAICGIHTKSRQKLLHHLNMTHIVRYTCTKCPFFTRHRNTAKSHARWHNGIKSKCKYCDAEFSKMTSLLSHLRKKHPSDQVCTLCGYSFIGERGLALHVQKKHQFDDPQVCTLCGYSFIGERGLALHVQKKHQFDDPQVSVRRSRSQRSDVTAVSPAQEAPVRPVTSLLSHLRKKHPSDQVCTLCGYSFIGERGLALHVQKKHQFDEPQVCTLCGYSFIGERGLALHVQKKHQFDDPQVCTLCGYSFIGERGLALHVQKKHQFDDPQVCTLCGYSFIGERGLALHVQKKHQFDEPQVCTLCGYSFIGERGLALHVQKKHQFDDPQVEPAGPTCAACGIRFANDAAYEQHVRVSPKHAAPDALEPNEPRWHKPKGPPRRKGDQTVTCEQCGMTLKGFKYYTYHFKRHHRDKIRTQFANAHERCLCELCGRVLQHSSALKSHMLVHTGKKDVQCSVCDKRFYYQRQLTMHMDTHNEAKRTFDCPVCARSFTSKSNKNRHLWVSAETRSTVRLGAILDSMMTVSGLTNLVPLPDALVMLIEVTETRSAVRLGAILDSVMTVSGLTDILPLPGALVMLIEVTETRSAVRLGAILDSVMTDDSKWTHRPPATSWRSGNVDRGNGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -