Cgly002106.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979627.1:5700119-5704498[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.091 5.6 8.3 1.1 3 23 23 45 21 45 0.91 2 16 0.00065 0.04 15.0 0.3 2 20 52 70 51 70 0.95 3 16 0.091 5.6 8.3 1.1 3 23 186 208 184 208 0.91 4 16 0.00065 0.04 15.0 0.3 2 20 215 233 214 233 0.95 5 16 0.091 5.6 8.3 1.1 3 23 349 371 347 371 0.91 6 16 0.00065 0.04 15.0 0.3 2 20 378 396 377 396 0.95 7 16 0.081 5 8.4 1.4 2 23 457 480 456 480 0.92 8 16 0.00065 0.04 15.0 0.3 2 20 487 505 486 505 0.95 9 16 0.091 5.6 8.3 1.1 3 23 621 643 619 643 0.91 10 16 0.00065 0.04 15.0 0.3 2 20 650 668 649 668 0.95 11 16 0.081 5 8.4 1.4 2 23 783 806 782 806 0.92 12 16 0.00065 0.04 15.0 0.3 2 20 813 831 812 831 0.95 13 16 0.091 5.6 8.3 1.1 3 23 947 969 945 969 0.91 14 16 0.00015 0.0094 17.0 2.7 2 23 976 997 975 998 0.95 15 16 0.0011 0.065 14.3 0.7 1 23 1008 1030 1008 1030 0.98 16 16 0.17 11 7.4 0.3 3 19 1037 1053 1036 1053 0.98
Sequence Information
- Coding Sequence
- ATGAACACGAGACGTTCCGCCGGTACTCCAACATGGTGCAGCACAGGTGGGTCGCGTCGCGTTACGTGCGCGCGCGAGGTCTGCGAGAGGAGATTCATCACGCGCCAGAAGCTGTCGGAGCACCACAACATCCACACGGGCCGCGCGCCCGTCAAGTGCACAGAGTGCGACGAGACGTTCCGCCGGTACTCCAACATGGTGCAGCACAGGTGGGTCGCGTCGCGTTACGTGCGCGCGCGAGGTCTGCGAGAGGAGATTCATCACGCGCCAGAAGCTGTCGGAGCACCACAACATCCACACGGGCCGCGCGCCCGTCAAGTGCACAGAGTGCGACGAGACGTTCCGCCGGTACTCCAACATGGTGCAGCACAGGTGGGTCGCGTCGCGTTACGTGCGCGCGCGAGGTCTGCGAGAGGAGATTCATCACGCGCCAGAAGCTGTCGGAGCACCACAACATCCACACGGGCCGCGCGCCCGTCAAGTGCACAGAGTGCGACGAGACGTTCCGCCGGTACTCCAACATGGTGCAGCACAGGTGGGTCGCGTCGCGTTACGTGCGCGCGCGAGGTCTGCGAGAGGAGATTCATCACGCGCCAGAAGCTGTCGGAGCACCACAACATCCACACGGGCCGCGCGCCCGTCAAGTGCACAGAGTGCGACGAGACGTTCCGCCGGTACTCCAACATGGTGCAGCACAGGTGGGTCGCGTCGCGTTACGTGCGCGCGCGAGGTCTGCGAGAGGAGATTCATCACGCGCCAGAAGCTGTCGGAGCACCACAACATCCACACGGGCCGCGCGCCCGTCAAGTGCACAGAGTGCGACGAGACGTTCCGCCGGTACTCCAACATGGTGCAGCACAGGTGGGTCGCGTCGCGTTACGTGCGCGCGCGAGGTCTGCGAGAGGAGATTCATCACGCGCCAGAAGCTGTCGGAGCACCACAACATCCACACGGGCCGCGCGCCCGTCAAGTGCACAGAGTGCGACGAGACGTTCCGCCGGTACTCCAACATGGTGCAGCACAGGTGGGTCGCGTCGCGTTACGTGCGCGCGCGAGGTCTGCGAGAGGAGATTCATCACGCGCCAGAAGCTGTCGGAGCACCACAACATCCACACGGGCCGCGCGCCCGTCAAGTGCACAGAGTGCGACGAGACGTTCCGCCGGTACTCCAACATGGTGCAGCACAGGTGGGTCGCGTCGCGTTACGTGCGCGCGCGAGGGTCTGCGAGAGGAGATTCATCACGCGCCAGAAGCTGTCGGAGCACCACAACATCCACACGGGCCGCGCGCCCGTCAAGTGCACAGAGTGCGACGAGACGTTCCGCCGGTACTCCAACATGGTGCAGCACAGGTGGGTCGCGTCGCGTTAAGTGCGCGCGCGAGGTCTGCGAGAGGAGATTCATCACGCGCCAGAAGCTGTCGGAGCACCACAACATCCACACGGGCCGCGCGCCCGTCAAGTGCACAGAGTGCGACGAGACGTTCCGCCGGTACTCCAACATGGTGCAGCACAGGTGGGTCGCGTCGCGTTACGTGCGCGCGCGAGGTCTGCGAGAGGAGATTCATCACGCGCCAGAAGCTGTCGGAGCACCACAACATCCACACGGGCCGCGCGCCCGTCAAGTGCACAGAGTGCGACGAGACGTTCCGCCGGTACTCCAACATGGTGCAGCACAGGTGGGTCGCGTCGCGTTACGTGCGCGCGCGAGGTCTGCGAGAGGAGATTCATCACGCGCCAGAAGCTGTCGGAGCACCACAACATCCACACGGGCCGCGCGCCCGTCAAGTGCACAGAGTGCGACGAGACGTTCCGCCGGTACTCCAACATGGTGCAGCACAGGTGGGTCGCGTCGCGTTACGTGCGCGCGCGAGGTCTGCGAGAGGAGATTCATCACGCGCCAGAAGCTGTCGGAGCACCACAACATCCACACGGGCCGCGCGCCCGTCAAGTGCACAGAGTGCGACGAGACGTTCCGCCGGTACTCCAACATGGTGCAGCACAGGTGGGTCGCGTCGCGTTACGTGCGCGCGCGAGGTCTGCGAGAGGAGATTCATCACGCGCCAGAAGCTGTCGGAGCACCACAACATCCACACGGGCCGCGCGCCCGTCAAGTGCACAGAGTGCGACGAGACGTTCCGCCGGTACTCCAACATGGTGCAGCACAGGTGGGTCGCGTCGCGTTACGTGCGCGCGCGAGGTCTGCGAGAGGAGATTCATCACGCGCCAGAAGCTGTCGGAGCACCACAACATCCACACGGGCCGCGCGCCCGTCAAGTGCACAGAGTGCGACGAGACGTTCCGCCGGTACTCCAACATGGTGCAGCACAGGTGGGTCGCGTCGCGTTAAGTGCGCGCGCGAGGTCTGCGAGAGGAGATTCATCACGCGCCAGAAGCTGTCGGAGCACCACAACATCCACACGGGCCGCGCGCCCGTCAAGTGCACAGAGTGCGACGAGACGTTCCGCCGGTACTCCAACATGGTGCAGCACAGGTGGGTCGCGTCGCGTTACGTGCGCGCGCGAGGTCTGCGAGAGGAGATTCATCACGCGCCAGAAGCTGTCGGAGCACCACAACATCCACACGGGCCGCGCGCCCGTCAAGTGCACAGAGTGCGACGAGACGTTCCGCCGGTACTCCAACATGGTGCAGCACAGGTGGGTCGCGTCGCGTTACGTGCGCGCGCGAGGTCTGCGAGAGGAGATTCATCACGCGCCAGAAGCTGTCGGAGCACCACAACATCCACACGGGCCGCGCGCCCGTCAAGTGCACAGAGTGTGACGAGACGTTCCGCCGGTACTCCAACATGGTGCAGCACAGGTGGGTCGCGTCGCGTTACGTGCGCGCGCGAGGTCTGCGAGAGGAGATTCATCACGCGCCAGAAGCTGTCGGAGCACCACAACATCCACACGGGCCGCGCGCCCGTCAAGTGCACAGAGTGCGACGAGACGTTCCGCCGGTACTCCAACATGGTGCAGCACAGGGACCGCCACCACCTGAAGAAGAAGCCGAAGGTGCGCGACTACGTGTGCCAGCAGTGCGGCGCCGTGTTCCACTCGCGCGCCAAGCTGCTGTGGCACAAGGAGACGCACGACGAGCGGCCCAAGGCGTGCCCGTACTGCAGCGACAAGTTCGTGCACGCCGCGTCGCTCACGCGCCACGACTGCTTCCTCGCCGACGCGCAGCGCGACAAGCACGAGAACGTGCCGTGCCCCATCTGCAAACAGGTGAGCCAACCAGAACAATAG
- Protein Sequence
- MNTRRSAGTPTWCSTGGSRRVTCAREVCERRFITRQKLSEHHNIHTGRAPVKCTECDETFRRYSNMVQHRWVASRYVRARGLREEIHHAPEAVGAPQHPHGPRARQVHRVRRDVPPVLQHGAAQVGRVALRARARSARGDSSRARSCRSTTTSTRAARPSSAQSATRRSAGTPTWCSTGGSRRVTCAREVCERRFITRQKLSEHHNIHTGRAPVKCTECDETFRRYSNMVQHRWVASRYVRARGLREEIHHAPEAVGAPQHPHGPRARQVHRVRRDVPPVLQHGAAQVGRVALRARARSARGDSSRARSCRSTTTSTRAARPSSAQSATRRSAGTPTWCSTGGSRRVTCAREVCERRFITRQKLSEHHNIHTGRAPVKCTECDETFRRYSNMVQHRWVASRYVRARGSARGDSSRARSCRSTTTSTRAARPSSAQSATRRSAGTPTWCSTGGSRRVKCAREVCERRFITRQKLSEHHNIHTGRAPVKCTECDETFRRYSNMVQHRWVASRYVRARGLREEIHHAPEAVGAPQHPHGPRARQVHRVRRDVPPVLQHGAAQVGRVALRARARSARGDSSRARSCRSTTTSTRAARPSSAQSATRRSAGTPTWCSTGGSRRVTCAREVCERRFITRQKLSEHHNIHTGRAPVKCTECDETFRRYSNMVQHRWVASRYVRARGLREEIHHAPEAVGAPQHPHGPRARQVHRVRRDVPPVLQHGAAQVGRVALRARARSARGDSSRARSCRSTTTSTRAARPSSAQSATRRSAGTPTWCSTGGSRRVKCAREVCERRFITRQKLSEHHNIHTGRAPVKCTECDETFRRYSNMVQHRWVASRYVRARGLREEIHHAPEAVGAPQHPHGPRARQVHRVRRDVPPVLQHGAAQVGRVALRARARSARGDSSRARSCRSTTTSTRAARPSSAQSVTRRSAGTPTWCSTGGSRRVTCAREVCERRFITRQKLSEHHNIHTGRAPVKCTECDETFRRYSNMVQHRDRHHLKKKPKVRDYVCQQCGAVFHSRAKLLWHKETHDERPKACPYCSDKFVHAASLTRHDCFLADAQRDKHENVPCPICKQVSQPEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -