Cgly022483.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979651.1:7112496-7114313[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0025 0.15 13.2 0.8 1 23 45 67 45 67 0.98 2 15 3.5 2.1e+02 3.3 0.7 3 23 96 117 94 117 0.91 3 15 0.0029 0.18 13.0 0.5 2 23 138 160 137 160 0.95 4 15 0.006 0.37 12.0 1.5 2 23 166 188 165 188 0.96 5 15 0.00076 0.047 14.8 0.9 1 23 192 215 192 215 0.96 6 15 0.054 3.3 9.0 0.7 1 23 217 240 217 240 0.93 7 15 0.0018 0.11 13.6 4.3 1 23 312 335 312 335 0.96 8 15 3.5 2.1e+02 3.3 0.0 2 20 363 381 362 382 0.92 9 15 0.0013 0.077 14.1 0.2 1 23 407 430 407 430 0.90 10 15 7.6e-05 0.0046 18.0 0.3 3 23 437 458 436 458 0.95 11 15 0.00033 0.02 15.9 0.9 1 23 463 486 463 486 0.95 12 15 0.013 0.8 10.9 0.9 2 23 492 514 491 514 0.90 13 15 0.00098 0.06 14.5 7.2 1 23 518 541 518 541 0.97 14 15 0.01 0.62 11.3 2.0 2 23 548 569 547 569 0.97 15 15 0.02 1.2 10.4 1.7 1 23 575 597 575 597 0.96
Sequence Information
- Coding Sequence
- ATGGAAATTTTCTTTCCAGATTTACCATGTAACAGACCAGCCAAGAAATGTAGCGCGAATAAGCTAAGAAGATCCAATCTTCAGATATTATTCAACAACACATCCATAATACCGTTCAAATGGCGCGGAAAGTACATTTGCTTTTATTGCGGTGAAGACGTAAAGGAGTACAACGAATTAAGAAAACACACGAGAAACCATGGGCGGTGTTCAGATGACAATCGGGCTCTGAGACTTGTCAAAGCAGCTGATGTAGAAGTCAAGATTGAcgtatctgaaataatttgtaATCTGTGCCATGAACCATTACCTAATTTCGATCATACAATAGACCACCTAATTAACAAACACAATTTGCCTTATAACAAAGACGTGAAGTTACCGATAGTGTCATATAGATTGTCGGATCTAAACTGCCTTTTATGCGATCAgaaatttagttatttaaacAAATTGATTAATCACGTTAACACGGATCATCCAAACAACTGTTTAGTCTGCGTCCAATGTCAGCAGAAGTTCAACAAAAAACGAGATCTCGACGCGCATTTTCGGACCAAACACAGAAATCGTTACACATGTTCGAAATGTGCATTAAACTTCTCAAAGAGTTCGGAACTTTTGAGCCACAGAAACAATGTTCATCCGTTTCTATGTAACATTTGTTTCAAACCTTTCCCGTCACTAAAAAAACGTTTACAGCATATTGAGTCAACTCACACAGATACAGTTCTTATATGTGGTTTCTGTTCCTTAAATAGTGATCGAACAGAATTCCTTGAGCATGCAGCTAAATGCAATGTGGACAAAGATGCAAATGGACCAGTCATGCTGGACTATGACAGAAAGCCTTTGGTGAAACAAATCAGAGATAACATAGCGTGTATTCTAAACATGTCAACCGCTGTACCGTTCAAGTATTTCTTGAGTAGGTTCAGATGTTTCTATTGCCCCAAAGATTTTAACGAATGTGACGATCTTAAACACCATACGATAATGGAACACCCCCTGTGCGACACCAAACTTAAATCTATGAAACTCCGCAATAGACATGACGGAGGCATCAAAGTCGACATTTCTGCTTTATCCTGCAAAATATGCTTTGAAATTTTACAAGACTTAGACACTCTGATAGATCATTTGATATGTGAGCATaagattaattataataaatcgaTATCTGTTAATCTGCAACCGTACAAACTAGCTAAAGAAAACTTCCCTTGCCCAATATGCGGGGAGGTGTACAGATATTTCAGAACGTTATTAAACCACGTGGGGAACAAgcatagtgataacaaaaacatTTGCGTTCATTGCGGTGCATCGTTTAGGAATTTACCGAATTTGCGAGCCCACATCGCTCGACGACATAAGGTCGCGCATTACAAATGCGAATCGTGTGATTTACAATTTACGTCGAATAATTACTTGCAAACTCACTTGGGTCGTATCCACGGGAACAAAATTGTGGAGTGTGAGACGTGTAAAGAGAAATTCACGTCAGTGCACGAGATGCAGAGACACAAAATAGACGTTCACACAACTGGACATAAATGCTCTTATTGCCATAAACTTTTCACCAGGAACTCCTTCATGGTGAACCACATAAGGCGTACTCATTTAAAGGAGAAGAACGTCCAATGTTCCTTGTGTCATGAGAAATTTTTCGACGCGCAACGATTGAAAATGCACATGGTCAAACATTATGGGGAGAGAAACTTCCACTGCGACGTTTGCGGGAAGAAGTTCTTGTGGAAGAAAAATTTGAAGGGTCACATGGCTTCGCATATTAGAAATAATCAATATCAAATATAA
- Protein Sequence
- MEIFFPDLPCNRPAKKCSANKLRRSNLQILFNNTSIIPFKWRGKYICFYCGEDVKEYNELRKHTRNHGRCSDDNRALRLVKAADVEVKIDVSEIICNLCHEPLPNFDHTIDHLINKHNLPYNKDVKLPIVSYRLSDLNCLLCDQKFSYLNKLINHVNTDHPNNCLVCVQCQQKFNKKRDLDAHFRTKHRNRYTCSKCALNFSKSSELLSHRNNVHPFLCNICFKPFPSLKKRLQHIESTHTDTVLICGFCSLNSDRTEFLEHAAKCNVDKDANGPVMLDYDRKPLVKQIRDNIACILNMSTAVPFKYFLSRFRCFYCPKDFNECDDLKHHTIMEHPLCDTKLKSMKLRNRHDGGIKVDISALSCKICFEILQDLDTLIDHLICEHKINYNKSISVNLQPYKLAKENFPCPICGEVYRYFRTLLNHVGNKHSDNKNICVHCGASFRNLPNLRAHIARRHKVAHYKCESCDLQFTSNNYLQTHLGRIHGNKIVECETCKEKFTSVHEMQRHKIDVHTTGHKCSYCHKLFTRNSFMVNHIRRTHLKEKNVQCSLCHEKFFDAQRLKMHMVKHYGERNFHCDVCGKKFLWKKNLKGHMASHIRNNQYQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -