Cgly023081.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979652.1:1966008-1968922[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.015 0.93 10.7 4.5 1 23 175 198 175 198 0.97 2 19 0.0007 0.043 14.9 1.8 1 23 207 230 207 230 0.96 3 19 0.46 28 6.1 0.6 2 23 243 265 242 265 0.96 4 19 0.0014 0.089 13.9 0.3 1 23 274 297 274 297 0.97 5 19 0.00077 0.047 14.8 0.4 1 23 309 332 309 332 0.97 6 19 0.00033 0.02 15.9 1.2 3 23 363 384 363 384 0.98 7 19 1.9e-05 0.0012 19.8 1.6 2 23 394 416 393 416 0.97 8 19 0.28 17 6.7 0.9 3 20 422 439 421 441 0.93 9 19 0.003 0.19 12.9 1.6 2 20 446 464 445 465 0.95 10 19 2.7e-05 0.0016 19.4 2.9 3 23 478 499 477 499 0.95 11 19 0.0052 0.32 12.2 4.6 1 23 504 527 504 528 0.94 12 19 0.0026 0.16 13.1 3.0 2 23 538 560 537 561 0.96 13 19 0.00038 0.023 15.8 0.3 1 23 588 611 588 611 0.94 14 19 1.4 88 4.5 0.5 2 23 618 638 618 638 0.90 15 19 0.55 33 5.8 1.7 2 23 645 666 644 666 0.97 16 19 4.8 2.9e+02 2.9 1.3 3 23 674 696 672 696 0.92 17 19 9.8 6e+02 1.9 0.8 1 23 703 725 703 725 0.81 18 19 0.0087 0.53 11.5 0.3 1 23 732 754 732 754 0.97 19 19 0.26 16 6.8 2.0 1 23 760 783 760 783 0.96
Sequence Information
- Coding Sequence
- ATGTCATTCAAAGAAGAGAAGCCGgacttaaaaattgaaaaacaagatgAAGACAAAAGAAAAGATCCGACCTCCTTCTTGCCAGAAGAGCCCATGTCATATGAACTCAAGcctaaaaagaagaagaaaaagaaaaagaaagatttaATGGAGGATCCATTTAAAGATATAGAACACAAGGTCACTCTACCGACACCAACGGTTTATGACCCAGTGCCAGATATAGAGGAGCCAATGTTGGATCCTGAAGTTAGTATAAAAGTTGAAAATATAGAGGTTGAATTGGATTTTAatgatTTTGCAAATGACAATGGTTTAATGGTAGAGGGACCTCAAAGTGAAGAGAGCCAAGAGCCAGCTGTGAAAATCGAAGACCAAAACCGTGAAGCAGTGCTTCTAACTTTTGAGAGTATTCTCAAAGGAAAGGAACTCGTAGACTACAACCAAGAGCCAAACCAACTAAACTACGATGAAGATCCAAACGTAAATTATAATCAAGGGTTCACGGCTCCAGCACCAAATCATGTATGCAAAATTTGCCATCTAGTCTTTCTAACTCCGAAAACTCTACGAATGCATCAAAAAAGGAAGCATAAAGCTTTCAGAAGATTTTTCAAACATATCTGTGATCATTGTGGTATGGCATACGAAATGAAGAACAGTCTGGTAGCTCATATGAAAAGAAAACACGGACCGAATTGTGTACCTGATGATATGGAAGAGAAGACATGCGATGTGTGTGCTCTAGTCTTCAAGGGCATTGCAAGATTACGTATGCACAAGAGGAGAAAACACGGCTCCTTTGAAGAATCTTTCAAATATATGTGTCAAGAATGTGGTTTAACGTATGATAAAGAGAGAAGTCTTATTGTCCATGTGCAAAGAAAACATTCGAACACACCCAAACCAGTTTCTGACACTTGGTACAACTGTCCCTTCTGTCCTAAGGTGTTCGCTATACGAGAAACTTATGCCAGACATGTTCAACGAAAGCATTGGGTAAACGGTGAAGAAAAGAAGGATCTAGAAAGGCAGGAAATCAAAGATTTACTGCATAGCAAGAATGAGGATACGGGGGAAATTGGGTGTAAAGAATGTCCTCTAGTTTTCTCATCGTTAAACTTCTTAAAATTACACATGAGAAGGAAGCACAATGCGCTAAAGGAAGATTTTAGGTTAAAATGCACTATTTGTAATCTATCGTATAGTAAACTTGAGAGTTTAAAACGTCATATTAGAAGAAAGCATGACAAGGGATCGTTTTGTGATGTCTGCGACCAACAATTTGGCAGCCGTGAATTGTATTTAAAGCATACACATAAAAAGCTGATACAAGAATGCCATATCTGCGGATCAGTGTTCGCAACTAGAGGAGGTTTGTGTAAACATCTGCATTGTACCCACAAGATTCAGACGCCAAAAACTGAATTCTGTGAAGAGTGTGGCAAAAGTTTTCAGGACAAAAAACAACTGAAACGTCACTACATGCACGTCCATTTAAAAGTGTCATATACATGtaaattttgtaagaaaatcttCAGAGCTAAGGAGAGTTATAGACGCCATGTATTATTGAAACATCACAATGTCATTGAAAAAAGGAGTGAGCAGCAATGTGATCAGTGCACGGAGAAGTTTGCAGACGAGTTTGAACTGTGTAAACATATCAATATTACACACCATTTACCAAAAACTGAGAAGGAAGAAGGAAACCCGAAAATtgtagaaattaaaaaagaagaaaCGGATGTACCAGCAAAGTATCAATGCACAAAATGCCCAGAAGATTACGAAAGCTGGGAGCAACTGAAAGTGCATTATGAGCAGAACCATCAAAAAATTACTAACGCACAATGTCAGGTCTGTGGTGAAATGGTGCCTGTGTTAGAACTACAGAAGCATATTAAAATACATAGTACGGACACAACTCAGCAATGCAGATTTTGCGAATTCGAAACATCGAATCGTGCCAGCATGACCCAACATACGTTGAGACACAAAAATGCAACGACGATACACTGCGACTTTGCTGGGTGTCGTTACAAAACTTATTACGAAGGTGCAATGGAGAAACATAAGAGAAAGCATGCCGATTTAGGAGTCAAATTCCAGTGCACGCAATGTCCATTCCAGTCTATGAATAAATATATTCTGAAGTATCACGAGGAAGCTCACGCGACTGGGAAAAAGAGGTACACATGTGACAAGTGTGACTATGCGACTATTCTGCCCGCTAACTTGGTTCAACATAAATACAAACATTCGACAGAGAAACGGTTCAAATGTGAAGTATGCCCGTTTGCTACAAAGTACAATACATCACTAAGGTTCCACGTTAAGAAAAAACATTGTGATCTCccaacatttaaattaatatctaattaa
- Protein Sequence
- MSFKEEKPDLKIEKQDEDKRKDPTSFLPEEPMSYELKPKKKKKKKKKDLMEDPFKDIEHKVTLPTPTVYDPVPDIEEPMLDPEVSIKVENIEVELDFNDFANDNGLMVEGPQSEESQEPAVKIEDQNREAVLLTFESILKGKELVDYNQEPNQLNYDEDPNVNYNQGFTAPAPNHVCKICHLVFLTPKTLRMHQKRKHKAFRRFFKHICDHCGMAYEMKNSLVAHMKRKHGPNCVPDDMEEKTCDVCALVFKGIARLRMHKRRKHGSFEESFKYMCQECGLTYDKERSLIVHVQRKHSNTPKPVSDTWYNCPFCPKVFAIRETYARHVQRKHWVNGEEKKDLERQEIKDLLHSKNEDTGEIGCKECPLVFSSLNFLKLHMRRKHNALKEDFRLKCTICNLSYSKLESLKRHIRRKHDKGSFCDVCDQQFGSRELYLKHTHKKLIQECHICGSVFATRGGLCKHLHCTHKIQTPKTEFCEECGKSFQDKKQLKRHYMHVHLKVSYTCKFCKKIFRAKESYRRHVLLKHHNVIEKRSEQQCDQCTEKFADEFELCKHINITHHLPKTEKEEGNPKIVEIKKEETDVPAKYQCTKCPEDYESWEQLKVHYEQNHQKITNAQCQVCGEMVPVLELQKHIKIHSTDTTQQCRFCEFETSNRASMTQHTLRHKNATTIHCDFAGCRYKTYYEGAMEKHKRKHADLGVKFQCTQCPFQSMNKYILKYHEEAHATGKKRYTCDKCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFKLISN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00353382;
- 90% Identity
- iTF_00353382;
- 80% Identity
- -