Basic Information

Insect: Coenonympha glycerion
Gene Symbol: salm
Assembly: GCA_963855885.1
Location: OY979629.1:8755177-8768250[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.64 39 5.6 0.8 3 21 2 20 1 21 0.94

2 11 7.5e-06 0.00046 21.1 0.9 1 23 321 343 321 343 0.98

3 11 1.5e-05 0.00091 20.2 2.1 1 23 349 371 349 371 0.98

4 11 2 1.2e+02 4.1 3.0 5 23 670 688 667 688 0.92

5 11 2.9e-07 1.8e-05 25.6 0.7 1 23 694 716 694 716 0.97

6 11 5.3e-05 0.0033 18.4 4.8 1 23 726 748 726 748 0.98

7 11 0.0042 0.26 12.5 2.0 2 23 925 946 924 946 0.97

8 11 0.044 2.7 9.2 1.6 1 14 952 965 952 966 0.94

9 11 1.2 72 4.8 0.0 10 23 993 1006 991 1006 0.93

10 11 6.7e-06 0.00041 21.3 1.7 3 23 1092 1112 1090 1112 0.96

11 11 8e-07 4.9e-05 24.2 0.5 1 23 1118 1140 1118 1140 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.64	39	5.6	0.8	3	21	2	20	1	21	0.94
2	11	7.5e-06	0.00046	21.1	0.9	1	23	321	343	321	343	0.98
3	11	1.5e-05	0.00091	20.2	2.1	1	23	349	371	349	371	0.98
4	11	2	1.2e+02	4.1	3.0	5	23	670	688	667	688	0.92
5	11	2.9e-07	1.8e-05	25.6	0.7	1	23	694	716	694	716	0.97
6	11	5.3e-05	0.0033	18.4	4.8	1	23	726	748	726	748	0.98
7	11	0.0042	0.26	12.5	2.0	2	23	925	946	924	946	0.97
8	11	0.044	2.7	9.2	1.6	1	14	952	965	952	966	0.94
9	11	1.2	72	4.8	0.0	10	23	993	1006	991	1006	0.93
10	11	6.7e-06	0.00041	21.3	1.7	3	23	1092	1112	1090	1112	0.96
11	11	8e-07	4.9e-05	24.2	0.5	1	23	1118	1140	1118	1140	0.98

Sequence Information

Coding Sequence: ATGTGTCCACGATGTCAGGAACAATTTGAAAATCTTCATGATTTCTTATATCATAAGCGACTTTGCGATGAAAAAGCTATGCAAATGGGTGAAGAGAGGATGCACTCTGATCCTGAGGATATGGTAGTCTCGGGAGACGAAGAAATGGATGGTCCCAATAAGCGACTAGAACAAGTCAGGAGGCATCGACAAGatgcagaaaataataatagccTCGAAGATGGCGAGGCTGAAATACCAGAAGCAGATGTACCTCCTGTGGGTCTCCCATTTCCCTTGGCAGGACACGTCACCCTTGAGGCTCTACAAAATACGAGAGTAGCTGTTGCTCAATTCGCCGCGACAGCGATGGCAAACAATGCTAACAACGAAGCCGCAATACAAGAATTACAAGTGTTACACAATACGCTTTACACTCTGCAGTCACAACAAGTATTTCAACTTCAGTTAATACGACAACTTCAAAATCAGCTGTCGTTAACTCGACGGAAAGAGGACGATCACCAAAGCCCGCCGCCAAGTGAACCGGAACAAAACGCCCCGACAACGCCGGCTCGATCTCCGTCGCCGCCGCGTCCGCCACGGGAGCCAACTCCTGTTGCACCCTCACCTCCTACTAGCCAAAGTTTACCTTCGACTCACTCTCATCTTACACCCAAAACAGAGTCGATCTCTATACCTAAGCTTCCAACTTCGTCGCCACCGATGATGTCCCACCCACCTTATAGTTCCATTTCATCGTCATTAGCATCTTCAATTATAACAAACAATGATCCTCCGCCGTCCCTAAATGAACCGAATACACTAGAAATGCTTCAGAAACGGGCACAGGAAGTACTCGATAATGCATCACAGGGTCTTCTGGCAAATAATCTTGCCGATGAACTAGCTTTTCGAAAATCAGGAAAAATGTCACCTTATGATGGAAAAAGTGGTGGCCGAAACGAACCATTCTTCAAGCATCGTTGCAGATATTGTGGAAAAGTATTTGGAAGCGACTCTGCACTTCAAATTCATATTCGATCCCACACAGGAGAAAGACCGTTTAAATGTAACGTATGTGGCTCTCGATTCACAACCAAAGGGAACCTTAAAGTTCATTTCCAGAGGCATACTGCAAAATTTCCACACGTCAAAATGAACCCTAATCCGGTTCCAGAACACCTGGATAAATATCACCCACCATTATTAGCTCAATTGTCACCGGGGCCCATTCCTGGGATGCCGCCACATCCACTTCAATTTCCTCCGGGAGGGCCAGCTCCTTTTCCGCCAAGCTTGCCATTGTACAGGCCACCGCATCATGATTTACTACCTCCGCGTCCACTGGGTGATAAGCCACTTTCGCATCACCCACTTTTTGCCATGAGAGAAGAACAAGATGCACCTGCTGACCTCAGCAAACCTTCCGCACCTAGCCCTCCGCGACCCGCATCTGATATTTTTAAGTCTGAACCCCAAGATGAAGAGAGCCAACGAGATTCCAGTTTTGAAGAGACTGATCGTATTTCACCAAAGCGAGAAATTGAAGACAGCGACATAGGACAAGATGCAGAACAAGATAGATATCCATCGACATCGCCGTATGACGACTGCAGCATGGATTCCAAATACAGCAATGAAGATCAAATTGGCAGAGAAAGTCCACACGTGAAGCCTGATCCAGATCAACCGGAAAATCTCTCAAGTAAGACTTCATCGATATCAGGACCAATTTCAATAGCAACGGGACTTCGTACTTTCCCTTCATTTCCACTGTTTCCGCACTCCCCACCCAGCAGCGTCTCTTCGGGTAGCCTTACTCCGTTCCACAACCATCCCAGCAACACAATGGACAGTGATCTTACTCGTGACCCCTTGTTTTATAATGCAATTTTACCGCGGCCCGGTAGCAACGACAATTCTTGGGAAAGCTTAATTGAAATAACAAAAACGTCGGAAACTGCGAAATTGCAACAATTGGTAGATAATATCGATAACAAAGTGTCGGATCCAAATGAGTGTATCGTTTGCCATCGTGTTCTGTCTTGTAAGAGTGCTCTACAGATGCACTAtcggactcacactggtgaacgACCTTTTCGATGCAAATTATGTGGCCGCGCTTTCACCACTAAAGGGAATTTAAAAACGCATATGGGCGTGCACCGTATAAAGCCTCCATCACAGTTATTACACCAGTGTCCCGTGTGCCATAGGAAATTTTCGGATCCAACTATGTTACACCAACATATTCGTCTTCACACGGGTGAAAGATGCAATGTGTTCGTAGACCAAATTCGCGATACCGAAATAAGCAATTACCAGTCATTAACCGGGTCAGACGTCACTGAATATAATTACGATCCCGTCCCACCTCCAACTTTTCCCACTCCTTCCACTCCCGGCGACCGAAGGGCGGACTCCCGCGGAACCGACGACGAGAGCGGCCGAGACGAGCGCGAGCCCGCCGCTCGGGAGTTCGACGACGAACCAGATATTAGAGATCGTCGAACTTCACCGCTCTCCGTCTGCGCCTCGGCGTCCGAACTCGAAGTAAAAACCATCACCACAACGGCTTCCCTCCCATCGGCGACAGGTTCGGACAGCgggcgcagcgcgcgcgcgtcgccgccgTCGCCGTCGCCGTCGGCGCTGTCCACGCCGCCGCGGCTGCCGCGCCACTCGCCGCTGCCGTCGCCGCCGACGCCGCTGGCCGCGCTCGGCGCTCTCGGCGGATCGCCCTTCAGCCCGCTCGGACTCGCTTTTCCCCCCGCAGTGCGCGGCAACACAACGTGTACCATCTGCTACAAGACATTCGCCTGCAACTCGGCACTTGAGATCCACTACCGGAGCCACACCAAGGAGCGTCCGTTCAAGTGCACCGTCTGTGATAGAGGCTTCTCTACCAAGAGCAGTGGCGGCGGTTGTCGTTGcgcgaggcgcgcgcgcgcagcccgcCCGCCGCACGCCACTGCTTTGGACCTCTGGAACGCCTTCGTCTACCCGGGCAACATGAAGCAACACATGCTCACTCACAAGATACGGGATATGCCGCCTGGGTTCGACAAAGGGGCGAGTGGTCCGTCGGGGCCGCCGAGCGAGGAGAGTCGAGATCACAGTCCGGACAGGCGCTCTTCCCCCGAGAAAATGGACCTCAAGAGGTCGCCGCCGGCGCACCCCCCTCCCCCGATGTCACACCCACCTCCTATTGACATGCCGCCGTTACCGAAAAGACCTACCGTGCCCAGCGTCCCGAGCCACCCGCCGCCGTCGGCGTCGTCCAAGCACCTGTGCGGCGTGTGCCGCAAGAATTTCTCGTCGTCGTCCGCGCTGCAGATCCACATGCGCACGCACACCGGCGACAAGCCTTTCCGGTGTGCGGTCTGCCAGAAGGCCTTCACCACCAAAGGCAACCTTAAGGTGCACATGGGCACGCACATGTGGAGCGGCGGCGCgtcgcggcgcgggcggcgcatGTCGCTGGAGCTGCCGCCGCGCCCGCTGCACGAGCCGCACGAGCTGCTGCGCCGCCCCGACCTGTTCTACCCCTACCTCCCCGCGCCGTTCCTCAACGGCATGCAACAGAAGCTGAACGAGATATCCGTGATACAGCAGAGCGCCGGACAGAACGGCGTAGCTGGAAAATTCCCCGGCCTACTCGGCTTCGGCGCGTTCGGGGCGGGAAGACCGGGGGCCGCGTCTCCGCTGGAGAGGCCGCCGTCGCTAGAGGGCGGGGACGAGCGCCAGGCGGCGATGCGGGAACTGGCCGAGAGAGGGCGAGAGCTGGCCGAGAGGAGTCGGCAAATGCGCGAGGAGAGCGAGAGGGAGCACTACCGAGCCGCGGGCGCGCTGCCCGCGCACGCGCCCAACCCCGCGCAGgcgtcgccgcccgcgccgctcgcgcacCCGCACCCGCTCGCCTCCTTGCCGCCGCCCGCCAGAACCGAAGGCCTCACCGTGTGA
Protein Sequence: MCPRCQEQFENLHDFLYHKRLCDEKAMQMGEERMHSDPEDMVVSGDEEMDGPNKRLEQVRRHRQDAENNNSLEDGEAEIPEADVPPVGLPFPLAGHVTLEALQNTRVAVAQFAATAMANNANNEAAIQELQVLHNTLYTLQSQQVFQLQLIRQLQNQLSLTRRKEDDHQSPPPSEPEQNAPTTPARSPSPPRPPREPTPVAPSPPTSQSLPSTHSHLTPKTESISIPKLPTSSPPMMSHPPYSSISSSLASSIITNNDPPPSLNEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKSGKMSPYDGKSGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLAQLSPGPIPGMPPHPLQFPPGGPAPFPPSLPLYRPPHHDLLPPRPLGDKPLSHHPLFAMREEQDAPADLSKPSAPSPPRPASDIFKSEPQDEESQRDSSFEETDRISPKREIEDSDIGQDAEQDRYPSTSPYDDCSMDSKYSNEDQIGRESPHVKPDPDQPENLSSKTSSISGPISIATGLRTFPSFPLFPHSPPSSVSSGSLTPFHNHPSNTMDSDLTRDPLFYNAILPRPGSNDNSWESLIEITKTSETAKLQQLVDNIDNKVSDPNECIVCHRVLSCKSALQMHYRTHTGERPFRCKLCGRAFTTKGNLKTHMGVHRIKPPSQLLHQCPVCHRKFSDPTMLHQHIRLHTGERCNVFVDQIRDTEISNYQSLTGSDVTEYNYDPVPPPTFPTPSTPGDRRADSRGTDDESGRDEREPAAREFDDEPDIRDRRTSPLSVCASASELEVKTITTTASLPSATGSDSGRSARASPPSPSPSALSTPPRLPRHSPLPSPPTPLAALGALGGSPFSPLGLAFPPAVRGNTTCTICYKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKSSGGGCRCARRARAARPPHATALDLWNAFVYPGNMKQHMLTHKIRDMPPGFDKGASGPSGPPSEESRDHSPDRRSSPEKMDLKRSPPAHPPPPMSHPPPIDMPPLPKRPTVPSVPSHPPPSASSKHLCGVCRKNFSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNLKVHMGTHMWSGGASRRGRRMSLELPPRPLHEPHELLRRPDLFYPYLPAPFLNGMQQKLNEISVIQQSAGQNGVAGKFPGLLGFGAFGAGRPGAASPLERPPSLEGGDERQAAMRELAERGRELAERSRQMREESEREHYRAAGALPAHAPNPAQASPPAPLAHPHPLASLPPPARTEGLTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961205;
90% Identity: iTF_01151442;
80% Identity: -