Basic Information

Insect: Coenonympha glycerion
Gene Symbol: prg
Assembly: GCA_963855885.1
Location: OY979630.1:6575975-6577802[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.48 29 6.0 5.1 1 23 177 200 177 200 0.89

2 10 0.0031 0.19 12.9 0.4 1 23 206 229 206 229 0.96

3 10 4.6e-06 0.00028 21.8 3.6 1 23 235 257 235 257 0.96

4 10 5.4e-07 3.3e-05 24.7 3.0 1 23 263 285 263 285 0.99

5 10 2.4e-05 0.0015 19.5 0.1 1 23 291 313 291 313 0.97

6 10 0.0012 0.075 14.1 0.5 1 23 319 341 319 341 0.95

7 10 9.7e-05 0.006 17.6 1.0 2 23 439 461 438 461 0.95

8 10 7.4e-05 0.0046 18.0 1.4 1 20 467 486 467 489 0.94

9 10 3.2e-05 0.002 19.1 2.1 1 23 495 517 495 517 0.98

10 10 0.0022 0.14 13.3 0.0 5 23 528 546 525 546 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.48	29	6.0	5.1	1	23	177	200	177	200	0.89
2	10	0.0031	0.19	12.9	0.4	1	23	206	229	206	229	0.96
3	10	4.6e-06	0.00028	21.8	3.6	1	23	235	257	235	257	0.96
4	10	5.4e-07	3.3e-05	24.7	3.0	1	23	263	285	263	285	0.99
5	10	2.4e-05	0.0015	19.5	0.1	1	23	291	313	291	313	0.97
6	10	0.0012	0.075	14.1	0.5	1	23	319	341	319	341	0.95
7	10	9.7e-05	0.006	17.6	1.0	2	23	439	461	438	461	0.95
8	10	7.4e-05	0.0046	18.0	1.4	1	20	467	486	467	489	0.94
9	10	3.2e-05	0.002	19.1	2.1	1	23	495	517	495	517	0.98
10	10	0.0022	0.14	13.3	0.0	5	23	528	546	525	546	0.93

Sequence Information

Coding Sequence: ATGGATGATTCCTTTATAATCGCGAATTTTCATGCGCTCTGTCGCCTTTGCCTGAATAAAAGTAGTCTTACCACATCGATTTTCAACACTACTTCTGACGATGAGACAAATATGTCTCTAACCTCGAAAATCGCTGAATGCTTCGAGCTGCAGGTGGATCCCAATGATGGTCTTCCAGCTAGGATCTGCTACAAATGCCTGTTTAAACTCAACAAATGTTCCAAATTCAGATCACAATGTATTCAAAGTGAAGCCAGATTGAGACAGATCACAAACAGTGTCAATGAGTTGGACAACTCCAATTCATCAGAGCTCAATGCTTTCAATTTTAATAACATGCAGGAATCCCAAAAACCTAAACCAGAAGATTACATTGTTGAAGACAGTGTTGTGATGGTTGTTGATCCGAGCCTTGATTATGACTCGTCCGAGGAATCCGAAACTGTTGATCAAGCTGAAGCAGAAACAGTAGAGCGGAACAATACACCAGATGGAGAGATAAACCCTGAATCGTTTTACAAGAATGTTTTTATGTGCAAGTACTGCGATCAAGCTTTCATCTCACAGGAGAAATGTAAAGAACACGAGCACAGCTTTCACGATCCAAACCTCCCTTACAAATGTGTTGAATGCAGTTTGGTGTTTGCTGAACGAAGTCAGTATGTTTCTCACACAAAACAAGTGCACGGGAGTGACAAACCTTACCACTGTCCCGAATGTGACAAATGTTTTGGTCGGAGGTCAGATTTGCGTAAACATTCGATTGTGCACACAGGTGTAAGACCCTTCCAATGTCAGTATTGCTTGAAAAGTTTTTCTCGTAATACAAATCTGAGTAAGCACCTGAGAATCCATGCGGGGCATAAACCCCACGTGTGCCCACTGTGTCCCCGTAGTTTTGTAGCGAAGGGAGATCTACAGCGTCATGTATTGGTACACTCTGGAATGAAACCCTACGCTTGTCGCAAGTGTCCCCTAACATTTGGTCGTAGAGATAAGCTCATCAAACATGAAGTTAAACATGGCCATGTAAGCCCTGACCATAAAGAATATGATAATGACCATGAAACACAAGACATGGTTGTTAGTGTCAACCCTTATAACAACCTAATGACCTCACCCACACAACTGAACTCTGTGAATGCAAATGCTAGTAATGATTATGATTTGCCTAGAGTACCAGATCATATCGCCGGTGAAGGAAGCTTCATAAGCCAAATGCAAAAGACTCCATCCACGTCTGGTAAACAGATACAGAATTCTCCTCCAAAACAGAAAGTGACATCTCCAAGCAAAAACAGacccaaaaatataaaatgtcacCAGTGCCCTAAAAGATTTTCCTCATTAGATGCCTACAAAACTCATGTGTCCATAGCACATATTGGATCAAGAGTCTTCCAATGCAAAATCTGTTTCAAAAAGTTTTCTAGAAAAAGGGAACTAGACCGCCATGTGCCTATACACTCTGGTATGAAGCCGTTTAGTTGCAGCCAGTGTGACAAAAAGTTTATTAGAAAGGACAAACTGGATAAACATGAACAGATGCATGAAAGCTTGGTTGTGAACATGCCTTGTATTGAATGCGGTGCCACTTTTGAGAAGAAAGCAGATCTAGTGGCCCACATAAAATCTCACTTTACTGATAACTTTGATGATAAAATCCCTGATAcggaaattaaaaaagaaaacgagCCTGATTTCCCCATGGATGATAATTTTTATGACTTAGAGACCTGA
Protein Sequence: MDDSFIIANFHALCRLCLNKSSLTTSIFNTTSDDETNMSLTSKIAECFELQVDPNDGLPARICYKCLFKLNKCSKFRSQCIQSEARLRQITNSVNELDNSNSSELNAFNFNNMQESQKPKPEDYIVEDSVVMVVDPSLDYDSSEESETVDQAEAETVERNNTPDGEINPESFYKNVFMCKYCDQAFISQEKCKEHEHSFHDPNLPYKCVECSLVFAERSQYVSHTKQVHGSDKPYHCPECDKCFGRRSDLRKHSIVHTGVRPFQCQYCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVAKGDLQRHVLVHSGMKPYACRKCPLTFGRRDKLIKHEVKHGHVSPDHKEYDNDHETQDMVVSVNPYNNLMTSPTQLNSVNANASNDYDLPRVPDHIAGEGSFISQMQKTPSTSGKQIQNSPPKQKVTSPSKNRPKNIKCHQCPKRFSSLDAYKTHVSIAHIGSRVFQCKICFKKFSRKRELDRHVPIHSGMKPFSCSQCDKKFIRKDKLDKHEQMHESLVVNMPCIECGATFEKKADLVAHIKSHFTDNFDDKIPDTEIKKENEPDFPMDDNFYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00353374;
90% Identity: iTF_01021552;
80% Identity: -