Basic Information

Insect: Coenonympha glycerion
Gene Symbol: -
Assembly: GCA_963855885.1
Location: OY979654.1:3880948-3899670[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.062 3.8 8.8 0.0 2 23 252 273 251 273 0.94

2 14 0.58 36 5.7 1.8 2 23 279 301 278 301 0.94

3 14 0.19 12 7.2 1.5 1 19 305 323 305 328 0.91

4 14 1.3e-05 0.00082 20.3 1.2 3 23 333 354 332 354 0.98

5 14 0.0075 0.46 11.7 1.4 2 23 358 380 357 380 0.95

6 14 0.0037 0.22 12.7 0.5 2 22 394 414 393 418 0.93

7 14 0.00012 0.0076 17.3 0.2 2 23 432 454 431 454 0.95

8 14 0.0064 0.39 11.9 1.6 2 21 468 487 467 492 0.93

9 14 8e-05 0.0049 17.9 1.6 2 23 507 529 507 529 0.96

10 14 0.027 1.7 9.9 0.1 3 21 546 564 545 569 0.93

11 14 1.1e-05 0.00069 20.6 0.2 2 23 578 600 577 600 0.94

12 14 0.18 11 7.3 3.5 1 23 606 629 606 629 0.92

13 14 0.00056 0.034 15.2 1.3 3 23 640 660 639 660 0.98

14 14 0.0059 0.36 12.0 1.1 1 23 666 689 666 689 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.062	3.8	8.8	0.0	2	23	252	273	251	273	0.94
2	14	0.58	36	5.7	1.8	2	23	279	301	278	301	0.94
3	14	0.19	12	7.2	1.5	1	19	305	323	305	328	0.91
4	14	1.3e-05	0.00082	20.3	1.2	3	23	333	354	332	354	0.98
5	14	0.0075	0.46	11.7	1.4	2	23	358	380	357	380	0.95
6	14	0.0037	0.22	12.7	0.5	2	22	394	414	393	418	0.93
7	14	0.00012	0.0076	17.3	0.2	2	23	432	454	431	454	0.95
8	14	0.0064	0.39	11.9	1.6	2	21	468	487	467	492	0.93
9	14	8e-05	0.0049	17.9	1.6	2	23	507	529	507	529	0.96
10	14	0.027	1.7	9.9	0.1	3	21	546	564	545	569	0.93
11	14	1.1e-05	0.00069	20.6	0.2	2	23	578	600	577	600	0.94
12	14	0.18	11	7.3	3.5	1	23	606	629	606	629	0.92
13	14	0.00056	0.034	15.2	1.3	3	23	640	660	639	660	0.98
14	14	0.0059	0.36	12.0	1.1	1	23	666	689	666	689	0.97

Sequence Information

Coding Sequence: ATGAGTGTAGTGAAGAACGAAATGGACCATGTCTGTCGTGGGTGTTTAGCCATTGATCGGACCCTGAGGCCGCTCATTAAAAATGTTGATTTGTTCTTCATTTTCCTCGGCAACGAACTGTCTATATCTGATGAGTCGAAGTACTACAACATTCTGCTGTGCTGGGAGTGCATCGCCCTCTTGAAGAAGGCGCAGGCATTCCGCACGAGGGTCCAAACCGCTCACAGATATTTTGAGAGGATTCTGAGCAGCCCAACGATCCGAGCCTTGACAAATCTAAGAGTCCACAAGAAAGACGACTACGACCTTATTCACATAGAGGACGAGAACGCGCCCAAGATAAAACCTGAAGAGCTGAAGTTTGAAGTGTCTCTGCAAGTTACTGCAGCTGACTGCCACATCAAGGAGGAAACTAATTATGATGAAGACGATCACTTTGACTATGAACCTGAAGACGAGTCAAAGCCTGACATATCCAGTTTGGTGAAGAaagagaaaaagaagaagaaatacaAAGTCAGTCCCCTAGGCAAAAGGATAAagacaaaaaatgtaaaatacaaGCCCGAAGACATCGACAAGTACATAGAGGAGCGGGAGTACACGCTCAAGGACGTGCTCGCGATGCGGGACGAACGAAAGCAGAGTCGGCTGCGCATCAGGAACATGGAGACCCGCTGCAATGTGTATATCGCCAAGCTGCTGGACTCGCAGAAGGCCGATCTCGCCAAGAAACCTACAAGTGGGGGTTTGACATGTTCGGAGTGCGACGCGACGGTGCCAGACCAGGAGACCATGAGGAGCCACTGGGAGCTGCACCCCGTGTCCCTGCTGCGCTGCCACTTCTGCGGGCTGCTCAGCCGCTCCAGGAAGTACCTCGCCTACCACGTGGAGTCGCGCCACTCCGTCATATACCGCTGCACCGTCTGCCACATCGAGTACAGGAACATCACGGAGTACTACCGACACGACCGCGAGCTGCACAAGACGATGCTCTGCGACTATTGCGGCAAGAAGTTCAACCAGAAGAGCGGCATCGAGAGGCACATCAAACGCAAGCACTTGCCATTAAAATGCGATGTTTGCAAGCGTCCGTACAAAAAGATGGCGTTTCTCAACAATCACATGGCGGTCTGTCACCCAGAAGTACAGTGGAGGAGCGTCAAACGTGAGCTCACTTACTGCGTAGAGTGCGACATGCACTTCGCGACCGAGTTCCTTTACAAACGACACCTGCGCACGGCGGTCGTGCACCGGCCGAGGCCGAAAATATCACGTTACCACTTACCAATACAGTGCCAGATATGTAAGAAAGTGTACAAACGGGAGGGCACCCTGGACAACCACATGGCGGTGCGCCACCCCGAGGTTAAATGGAAGGCGGTCAAGCGCGAGCTGACGTACTGCGTCGAATGCGACATCCACTTCGCCACTGAGGATCTGTTCAAACGTCACTTGAGGCATTACGTTAGGCACAGAACCAAACCACGCAAAGAGCAATACAACCACTTGCCGGCCAAGTGTTATATATGCAATTTCGAGTTCAAACGAAAGTACTATCTCAACGAACACATGAAACTCCTGCACCCGGAGCTCGCGGAGACGAAAGCGAACATAGTCAAAGAGCTAGCGTACTGCGTGGAGTGCGACCTGCAGTTCGCGAGCGAATACTTTTACAAACGCCACCTGAGGTACGCGGTCGCGCACAAGCGCAGGATCAGGCCTAAAGTTCCATGTCCGGATTGCGGCAAGATATTCAGCCGGAAGAGCTACATGGACAACCATTACAAGCTGGTGCATGTGAGAAAGAGTCAGCACTACTGCGAGCTGTGTGACAAGCACTTCATCAACGGGTACGCGATACGCACGCACAAGAAGTTCGTGCACGAAAAGTACGAGAAGCCCAAGAACAAGATCTGCGACATCTGCGGGCGAGGCTTCCACACGAACCGCGTGCTCATCAACCACAAGCGCACCCACACGGGCGAGCGGCCGCACAAGTGCAGCTACTGCCCCGCCGCCTTCGCGCAGAACGTGGCGCGCAAGACGCACGAGAAGACCCAGCACAAACATCTGCTGCACGAGCTCAAGGCGTTCACGTGA
Protein Sequence: MSVVKNEMDHVCRGCLAIDRTLRPLIKNVDLFFIFLGNELSISDESKYYNILLCWECIALLKKAQAFRTRVQTAHRYFERILSSPTIRALTNLRVHKKDDYDLIHIEDENAPKIKPEELKFEVSLQVTAADCHIKEETNYDEDDHFDYEPEDESKPDISSLVKKEKKKKKYKVSPLGKRIKTKNVKYKPEDIDKYIEEREYTLKDVLAMRDERKQSRLRIRNMETRCNVYIAKLLDSQKADLAKKPTSGGLTCSECDATVPDQETMRSHWELHPVSLLRCHFCGLLSRSRKYLAYHVESRHSVIYRCTVCHIEYRNITEYYRHDRELHKTMLCDYCGKKFNQKSGIERHIKRKHLPLKCDVCKRPYKKMAFLNNHMAVCHPEVQWRSVKRELTYCVECDMHFATEFLYKRHLRTAVVHRPRPKISRYHLPIQCQICKKVYKREGTLDNHMAVRHPEVKWKAVKRELTYCVECDIHFATEDLFKRHLRHYVRHRTKPRKEQYNHLPAKCYICNFEFKRKYYLNEHMKLLHPELAETKANIVKELAYCVECDLQFASEYFYKRHLRYAVAHKRRIRPKVPCPDCGKIFSRKSYMDNHYKLVHVRKSQHYCELCDKHFINGYAIRTHKKFVHEKYEKPKNKICDICGRGFHTNRVLINHKRTHTGERPHKCSYCPAAFAQNVARKTHEKTQHKHLLHELKAFT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -