Basic Information

Insect: Coenonympha glycerion
Gene Symbol: -
Assembly: GCA_963855885.1
Location: OY979651.1:1375955-1382522[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.2e-05 0.0014 19.6 3.1 1 23 383 405 383 405 0.99

2 12 0.0021 0.13 13.4 5.2 3 23 415 435 413 435 0.96

3 12 0.00016 0.0099 16.9 3.1 1 23 441 463 441 463 0.98

4 12 1.3e-05 0.00078 20.4 1.5 2 23 469 490 468 490 0.97

5 12 0.00038 0.023 15.8 6.1 1 23 496 518 496 518 0.98

6 12 0.0005 0.031 15.4 1.3 1 23 524 547 524 547 0.96

7 12 0.0018 0.11 13.6 4.2 1 23 555 577 555 577 0.98

8 12 0.018 1.1 10.4 6.6 1 23 581 603 581 603 0.98

9 12 0.004 0.24 12.6 4.9 1 23 610 632 610 632 0.98

10 12 2.7e-06 0.00016 22.5 2.8 1 23 638 660 638 660 0.99

11 12 0.00016 0.0096 17.0 2.2 1 23 666 688 666 688 0.97

12 12 0.00016 0.0099 16.9 1.4 1 23 694 716 694 716 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.2e-05	0.0014	19.6	3.1	1	23	383	405	383	405	0.99
2	12	0.0021	0.13	13.4	5.2	3	23	415	435	413	435	0.96
3	12	0.00016	0.0099	16.9	3.1	1	23	441	463	441	463	0.98
4	12	1.3e-05	0.00078	20.4	1.5	2	23	469	490	468	490	0.97
5	12	0.00038	0.023	15.8	6.1	1	23	496	518	496	518	0.98
6	12	0.0005	0.031	15.4	1.3	1	23	524	547	524	547	0.96
7	12	0.0018	0.11	13.6	4.2	1	23	555	577	555	577	0.98
8	12	0.018	1.1	10.4	6.6	1	23	581	603	581	603	0.98
9	12	0.004	0.24	12.6	4.9	1	23	610	632	610	632	0.98
10	12	2.7e-06	0.00016	22.5	2.8	1	23	638	660	638	660	0.99
11	12	0.00016	0.0096	17.0	2.2	1	23	666	688	666	688	0.97
12	12	0.00016	0.0099	16.9	1.4	1	23	694	716	694	716	0.98

Sequence Information

Coding Sequence: ATGCGGTGTTGCGTATCTCACTGCCTAAACACTTCGGATAAAGTCTCCACATCGCGGGGGAAGGGCCGGCCTAAGCTGGAGGCGATAAGTTTCCACGGGTTCCCCAAGAAAGCACATCTACGAGCTGCTTGGCTCAAAGCCCTCGGCAAACGAGAATCTCACCTCCTGGACTCGGCTGTGGTCTGCTCGCAGCACTTCCTTCATGATGATGTTTGTGAAACAGAGAGTGGGGAAAAGCTGCTCCGTCGCGGGGCTGTTCCTTCCACTGTACAGGTCTGCATGATGTGCCTGGACACTGACAGCCAGATGTTTCTGATGAGGAAGCACAAGTTTGACGATGCATATGAGAAGTTAACCGGACAGCCTTTGTGGGACGGAGGAAACCTGAAGCAAACACTTTGTGTACAATGTGCTCAGCAGTTGAGGAACTTTAGCAGATTCAGAGAGCAGAGCTTGAGAGCGCGCTGTCTGATGATGGAGTTAATACAGAAACATGAACTTataacaataaaccacataAGAGTGATCAAACGCAAACTGAACAACGACTTTTCCTACCACTATGATATATACAAAGAAGAAGCCGAAGTTgctaaaaatgaaatatttgatGATGATGCAGACAAGGGAGTGAAAATTGAACTAAGTGATGACTCAATGTGGGACTTTGATGATGACGGTGATGACATGGATACAAATGAAGAAGCTGTTGATGCGGGCTCTGACGGTGAAGTGTTCATCGAGTTAATCCCAACTCGCACTAAATATGATCCTCTATCTTCAAAGTTACAGACCAAGAATGAAAATGAAGAAGACAATACTGTGATTCAAACAAAATCTCGAATAGAAGGTAACAATGATGAATTAGACAGGAAGTCATTTGAAAACGagaaaaaaacaagcaaaatgcAATACAAGATTCAGCACATCCAAGATAGAGGAACAAAGGGAGAATCCATGAATTTCGATAATCAAAACATTGAAAATGCCCCCAAAGACAAAGGTAATGAAGAAAACGATCTGGATATATCAGAAACTCTCCAAGAACTATACAAACAGTCAGTCGAGGCAAACAACGAAGCTTTCAACTGGGAAAGTGATCTTTCCGACTGCACCCTCTCAAGCATCTCTTGGGGAGACGAAGTTTACACTTGCGATATTTGTCAGAAAACGTTCAAAGAGAGGAAACGGTTAACCCAACACATAAAAAGACATAACGTTGCCATCGATAAATCTATATGCTGCGAACTCTGCGACAGCAAATTCAAGTTCAAAAGCCACTTGGTAAATCACTTGCGGTCTCATGCAAGCGAAAAGCTGTACTCCTGTACGGTGTGCCCCAAAAAGTTCGCATTAAAATGCAGTCTGTCAAGGCACATGACATCACATAAAGAAAAACACATAACATGTAAACAATGTCCGTACAAAACGTCTCGGCGGGACCAACTGTTGAATCACATGAGGACACATACAGGCGAGAGAAGATACGCTTGCAAGTTATGCACGTACAAGTGTTACCACAACAGTGATCTGGTGAAACACATGAGGACACATACAGGCGAAAAGCCGTTCCCCTGTGAATTTTGTGACCTTAAATTTGCCAAGAGGAACACGTTAACAAGGCACACGTTACGGCTCCATAGTAGACAGGGCGAAACCCCTTTTACGTGCAATATTTGCGATTACAAATGTTACTACCAAGACATGTTCATAAAACACGCGAAAACTCACGCCAAGACGTACTCTTGTGGACAGTGCGAGTACACATGTCACTCGGAAACCCAACTCAAAAGGCACACAAAAACACATACCGCTGAAGTGAAGTCTTACGCTTGTGACTTCTGCGACTTCACAGTTAACTTCAAGTGTCATTTGGTTAGGCACATACGAACACATACCGGTGAAAGGGCGTTTAAATGCAAGACATGCAACCGTGCGTTTATGGAAAAGAGCAAGCTCACGCGACACATGAGGATACACTCTGACGAGAAGCCGTTTGCGTGTACTTCGTGCCCGTATAGGAGCAGGCGTAATAGTAATTTGGAAAAACACAAGAAAACACATACTCGTGAAAATCGTTTCTCGTGTGCGGAATGCCCTTTTAAATGTGCCCGGATCACCGCTTTGACGAGGCACATGCGAACTCATAAGTGA
Protein Sequence: MRCCVSHCLNTSDKVSTSRGKGRPKLEAISFHGFPKKAHLRAAWLKALGKRESHLLDSAVVCSQHFLHDDVCETESGEKLLRRGAVPSTVQVCMMCLDTDSQMFLMRKHKFDDAYEKLTGQPLWDGGNLKQTLCVQCAQQLRNFSRFREQSLRARCLMMELIQKHELITINHIRVIKRKLNNDFSYHYDIYKEEAEVAKNEIFDDDADKGVKIELSDDSMWDFDDDGDDMDTNEEAVDAGSDGEVFIELIPTRTKYDPLSSKLQTKNENEEDNTVIQTKSRIEGNNDELDRKSFENEKKTSKMQYKIQHIQDRGTKGESMNFDNQNIENAPKDKGNEENDLDISETLQELYKQSVEANNEAFNWESDLSDCTLSSISWGDEVYTCDICQKTFKERKRLTQHIKRHNVAIDKSICCELCDSKFKFKSHLVNHLRSHASEKLYSCTVCPKKFALKCSLSRHMTSHKEKHITCKQCPYKTSRRDQLLNHMRTHTGERRYACKLCTYKCYHNSDLVKHMRTHTGEKPFPCEFCDLKFAKRNTLTRHTLRLHSRQGETPFTCNICDYKCYYQDMFIKHAKTHAKTYSCGQCEYTCHSETQLKRHTKTHTAEVKSYACDFCDFTVNFKCHLVRHIRTHTGERAFKCKTCNRAFMEKSKLTRHMRIHSDEKPFACTSCPYRSRRNSNLEKHKKTHTRENRFSCAECPFKCARITALTRHMRTHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -