Cgly023649.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979653.1:3194324-3196735[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.9e-05 0.0024 18.9 0.8 1 23 130 152 130 152 0.98 2 13 0.0001 0.0062 17.6 2.9 1 23 158 181 158 181 0.96 3 13 0.00043 0.026 15.6 2.3 1 23 187 209 187 209 0.97 4 13 3.6e-05 0.0022 19.0 1.8 1 23 215 237 215 237 0.99 5 13 0.0026 0.16 13.1 3.6 1 23 243 265 243 265 0.99 6 13 0.0014 0.088 13.9 4.6 1 23 290 312 290 312 0.98 7 13 0.00014 0.0088 17.1 3.7 1 23 324 346 324 346 0.98 8 13 0.00035 0.022 15.8 6.1 1 23 359 381 359 381 0.97 9 13 1.7 1e+02 4.3 1.0 1 23 389 410 389 410 0.84 10 13 0.00048 0.029 15.4 0.5 2 23 417 438 416 438 0.93 11 13 0.0016 0.096 13.8 0.9 1 23 444 466 444 466 0.99 12 13 1.1e-05 0.00067 20.6 3.4 1 23 472 494 472 495 0.94 13 13 0.0024 0.15 13.2 3.2 1 23 506 528 506 528 0.98
Sequence Information
- Coding Sequence
- ATGCCGCGAGTCACCACCAAACGTAACAATTGCAAATCTGTTACGAAACGACGAACGAAGAAGACTAAATATGTGAATGGTAACGATAGAAGTGAACAAGATCAAGACAATATCGAGGTCACACAACAGGACCAGAAGTTAGTAGACGGGGAGGTCTATCAAACTGAAACATTGGTGCCTTTTAAGGGTGGTGCGGAGTCATGCTACTTGCTGATTGTGGAAAAGGAAAAAAAGCCTGTGATGAACATTGATATCGAGATGGATCAGGATGAAGACAAAGTCAGCAATGTACAAGAGTTTGATGAAGAACAGAAGAAAGTTGCTTCAGAACAGGTTTCTGATGATAAGAGGACAGCGAAGTGTATTAAAAGCCGGCAGCAGAGGCCGCACCAGTGCCAAATCTGTGTGCGAGGCTTCAAGACTGCGGCATCATTGCAAAGCCATCTGAACATGCACACGGGAAATAAACGACATGTGTGCAAGTACTGCAAAAAGTCCTTCACTACGTCTGGGGAGCGTGTGCGTCATGTCCGGTACATACACACGCATGAAAAGCCACATAAGTGTAAGGAATGTGGCTACGCTACTGTGGAGATGTCCAAACTGAAGCGTCACATACGCTTCCACACAGGCGAGCGCCCTTACCAGTGCCCCCTCTGCACGTCTGCCTTCCACGATGCAACAAAGCTGAAGCGTCACATCCGCACCCATACAGGCGAAAAGCCGTACAAGTGCCCTTACTGCACGTATGGCACGCAAGACACATTTAATCTAAAGCGCCACGTCCATACCCACAAGGGCAAAGGTTCGTACCAAGACCCTCCGTGCATGAACTCCACACAAGACACGCCCAAGCTGAAAGACGAATACAAGTGTGACCACTGCAACATGTCTTTTGTGCAGTTCAACTCGTTCAAGACTCACAAACTTATACACAATGAGTCTAAGCCCCCCTCACCAGAGAAGCGATACAAGTGTGAACATTGTAATTTGTGCTTCGCACAATTGAACTCGCTCAGGGCTCACAAACTTATACACAATGAGCCTAAGAAGCCTCCTTCGACAGGGAAGCCACACAAGTGTGACCTCTGCAATCTATGCTTCAAGCACTCCAGTGCACTCAAGGCTCATAAACTCATACACAACGTGTCTGAAAAGCCTGTGTTTCAGTGCGAGTTGTGTCCAACAACATGCGGGCGAAATCTACGTATTCATATAGAAAAGATTCACACTTCTGACACACCACTCAAATGCATAAAGTGTGGCGAATCATTTCCAGATCGATATTCCCTTAGAGTGCACAACAAGACCCATGAGGGTGAAAAGTGTTTCAGATGCGAGCTTTGCCCGTACGCGTCGACTGCACTACGTCACCTCAACTCTCACATGCTCACACATACAGATGAAAAACCTTTTGCTTGTGATCAGTGTGATCAGTCCTTTAGGCAGAAGCAACTGTTGAAGCGCCATCAAAACCTGCACCACAATCCCAACTATAAACCTAAAAAGAAGACTCACACTTGCCACGTGTGCAAGCGGACGTATGCTCTCAAGGGCCGTCTGATCCGACACCTCGCCACACACGATTGCGACTCCGGCTACGAAGAAAAAGCACCGACCCTTAAGTTCAGACGGAAGAAAAGATCCAATTTTGTTGATGGAAATGCTAAGACGCAGACGGATGGTGCCGACAACGAACCGGAGCCGATATTGACTGTGGTGGTCGAAGTGATCCAACCGGAGGACGATACCGGTATGCAACGAACCATCAAGCTTGAAAGAGAAGACGACAAACAGCAGCTCGTGGCGGCGCCCGACTGTGAGGATGAAGAAGAATGCTTAGAGGAAGAAGATAATTATGATACAAAGTCAGGGCTGAAAGGTATTGACCGAATCATCAAGCTTGAAACAGAGGACAACGAACAGCAGCTCATGGCGGCGCCTGACTGTGATGGTGAAGAAGAATACTTAGAGGAATATGATATGACGCCGAAAGATATCGACCGAACCATCCAGCTTGAAAGAGAAGACAACAAACAACAACTCATGGCGGCGGCTGCCTGTGAAATGCGAGGACGAAGAACAATACtaaaagaagataataataatacagatTAA
- Protein Sequence
- MPRVTTKRNNCKSVTKRRTKKTKYVNGNDRSEQDQDNIEVTQQDQKLVDGEVYQTETLVPFKGGAESCYLLIVEKEKKPVMNIDIEMDQDEDKVSNVQEFDEEQKKVASEQVSDDKRTAKCIKSRQQRPHQCQICVRGFKTAASLQSHLNMHTGNKRHVCKYCKKSFTTSGERVRHVRYIHTHEKPHKCKECGYATVEMSKLKRHIRFHTGERPYQCPLCTSAFHDATKLKRHIRTHTGEKPYKCPYCTYGTQDTFNLKRHVHTHKGKGSYQDPPCMNSTQDTPKLKDEYKCDHCNMSFVQFNSFKTHKLIHNESKPPSPEKRYKCEHCNLCFAQLNSLRAHKLIHNEPKKPPSTGKPHKCDLCNLCFKHSSALKAHKLIHNVSEKPVFQCELCPTTCGRNLRIHIEKIHTSDTPLKCIKCGESFPDRYSLRVHNKTHEGEKCFRCELCPYASTALRHLNSHMLTHTDEKPFACDQCDQSFRQKQLLKRHQNLHHNPNYKPKKKTHTCHVCKRTYALKGRLIRHLATHDCDSGYEEKAPTLKFRRKKRSNFVDGNAKTQTDGADNEPEPILTVVVEVIQPEDDTGMQRTIKLEREDDKQQLVAAPDCEDEEECLEEEDNYDTKSGLKGIDRIIKLETEDNEQQLMAAPDCDGEEEYLEEYDMTPKDIDRTIQLEREDNKQQLMAAAACEMRGRRTILKEDNNNTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -