Basic Information

Insect: Coenonympha glycerion
Gene Symbol: -
Assembly: GCA_963855885.1
Location: OY979653.1:1518615-1522056[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00039 0.024 15.7 0.1 2 23 256 277 255 277 0.96

2 11 7.4e-05 0.0045 18.0 2.0 1 23 296 318 296 318 0.99

3 11 0.0017 0.11 13.7 2.4 1 23 326 349 326 349 0.92

4 11 0.0025 0.15 13.2 2.5 1 23 355 377 355 377 0.97

5 11 2e-06 0.00012 22.9 4.4 1 23 383 405 383 405 0.98

6 11 7.5e-06 0.00046 21.1 2.9 1 23 411 433 411 433 0.96

7 11 1.1e-05 0.00068 20.6 0.2 1 23 439 461 439 461 0.99

8 11 1.5e-07 9.4e-06 26.4 0.6 1 23 467 489 467 489 0.98

9 11 0.00021 0.013 16.6 0.6 1 23 495 517 495 517 0.98

10 11 8e-05 0.0049 17.9 4.1 1 21 523 543 523 545 0.96

11 11 3.4e-06 0.00021 22.2 0.4 1 23 551 573 551 573 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00039	0.024	15.7	0.1	2	23	256	277	255	277	0.96
2	11	7.4e-05	0.0045	18.0	2.0	1	23	296	318	296	318	0.99
3	11	0.0017	0.11	13.7	2.4	1	23	326	349	326	349	0.92
4	11	0.0025	0.15	13.2	2.5	1	23	355	377	355	377	0.97
5	11	2e-06	0.00012	22.9	4.4	1	23	383	405	383	405	0.98
6	11	7.5e-06	0.00046	21.1	2.9	1	23	411	433	411	433	0.96
7	11	1.1e-05	0.00068	20.6	0.2	1	23	439	461	439	461	0.99
8	11	1.5e-07	9.4e-06	26.4	0.6	1	23	467	489	467	489	0.98
9	11	0.00021	0.013	16.6	0.6	1	23	495	517	495	517	0.98
10	11	8e-05	0.0049	17.9	4.1	1	21	523	543	523	545	0.96
11	11	3.4e-06	0.00021	22.2	0.4	1	23	551	573	551	573	0.98

Sequence Information

Coding Sequence: ATGGATAATGTGCTGCAGAGAACCATATGTCGGACCTGTCTCACGGAGACTTCTAGTTATAAATCCCTACTGAGCAAAACAGACGGAGATGTACGAACCTTGCGCGATGTTCTCTCAAATTTCACCAACGTCGATATAATAATGAGTGATAAATACCCCAAACACGTTTGCAATGAGTGCTACACAATGTTGTTCAAAGCGGACGAGTTTAAAACCCGGTGTTTACAGTCGGAAACTATATTAAAAAACGGTTTTCTCTCCCACACTTTGGGAGACTTAATCAAACGAGAAATGGTTACAGCAGAACACTTGAAGGTCTCCAATTCGATTAACAATCCTCAAATCGTAAGTAGAAATTATTTTGATAGTTGTATACAGAAGGATAGTGTAGCTACATTTGAAATTGAGGTGGCTAAGGTAGAAAATCACTACACGACAGATATTCAAAGAAACGATTCCAATTACATGAAAGAAGAGCAAGATGATTTTCTACAAGATGATACTAATGATCTACCGGACAACATGGTTATAGAAAGTACTTCTATAGATGATAATTTAATAGCTACAGCCATAGCTAGCGATGTGGCTAATTTAAAGACAATCAAACATTGCAGTCATATAAAAGACAAAAAAGAAACATCTGATAGTATAAATGAGTTAACGTTATTGAAGACTCATTTAAAAACGCATAAAGTAAAAGCGAAAGTTAAACAGAAGAGGACGAAAAGTGACGTCGAAAACAAAAGTGGTTTAATTTTGACTCTGATTTGTCCAAAATGTGGTGAAAAGTTTGTGGGAATGGCATCGTTCCAAGCTCATTTAAAATCCCATAAAGAAGGCTCTGAACTAGATAATGTTAGATTGTTAAATAATGGTGTAGAAAACTACCAATGTTCGCTGTGTATGCGTAAGTTTGTTCAGCGGTCGTCGTTGGTGAAACATATAAAAAGGCATGGTGACAGAGCGCAAGTAAAGTTCCCGTGCAACAAATGCAAGCGAGAGTTCCAGCACAAGGCACACCTGGACAACCACATAGTGCTGGTGCACTCCAAGGAGCAGGGCTTCACCTGCGACGTGTGCAGCAGGGGCTTCTCCACGCAGGAGTGTCTGGACAGCCACAAAGACAGACACAAAGTTGACAGGAAACACCAGTGCAAGGTGTGCGGCAAATGCTTCTCGATGCTGTCGACCCTCACGGAGCACATGAAGATCCACACGGGCGAGAAGCCGTACCTGTGCTCGGTGTGCGGGCGCGGTTTCAGCCAGAAGAACAACATGCACCAGCACATGCGGCGCCACCAGGGCGTCAAGCCGTTTAAATGCGACTCCTGCGACAGAGGGTTCGTGTCGAAGGGCGAGCTGGAGGCGCACGCGCGCAAACACAGCGGCGCGCACCCGTTCGTGTGCGACGACTGCGGCGGCAGCTTCACCACGTCCAGTTCGCTCACCAAGCACAGGAGAATTCACACGGGCGAGCGGCCATACGCCTGCGACCTCTGCCCAATGCGCTTCACAGCCCTCAACACGCTGAAGAACCATCGCCGGACGCACACCGGCGAGAAACCATACCAGTGCTCCCACTGTGAAAAGGCCTTCACCCAGCGGAACGACCTGGTGTCACACATTCGCTGCCACACAGGGGAGCGGCCTTATGTGTGCACATTCTGTGGACAGGCCTTTAGGAAGACATCTGCCTTGAAAGTCCACATTAAAGTGCATGGGAAAGATAATATGGTTTTGTAG
Protein Sequence: MDNVLQRTICRTCLTETSSYKSLLSKTDGDVRTLRDVLSNFTNVDIIMSDKYPKHVCNECYTMLFKADEFKTRCLQSETILKNGFLSHTLGDLIKREMVTAEHLKVSNSINNPQIVSRNYFDSCIQKDSVATFEIEVAKVENHYTTDIQRNDSNYMKEEQDDFLQDDTNDLPDNMVIESTSIDDNLIATAIASDVANLKTIKHCSHIKDKKETSDSINELTLLKTHLKTHKVKAKVKQKRTKSDVENKSGLILTLICPKCGEKFVGMASFQAHLKSHKEGSELDNVRLLNNGVENYQCSLCMRKFVQRSSLVKHIKRHGDRAQVKFPCNKCKREFQHKAHLDNHIVLVHSKEQGFTCDVCSRGFSTQECLDSHKDRHKVDRKHQCKVCGKCFSMLSTLTEHMKIHTGEKPYLCSVCGRGFSQKNNMHQHMRRHQGVKPFKCDSCDRGFVSKGELEAHARKHSGAHPFVCDDCGGSFTTSSSLTKHRRIHTGERPYACDLCPMRFTALNTLKNHRRTHTGEKPYQCSHCEKAFTQRNDLVSHIRCHTGERPYVCTFCGQAFRKTSALKVHIKVHGKDNMVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -