Cgly022567.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979651.1:7554147-7556658[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0089 0.54 11.4 2.8 1 23 5 28 5 28 0.93 2 18 0.028 1.7 9.9 1.0 2 23 57 79 56 79 0.91 3 18 0.0013 0.083 14.0 1.1 1 23 101 123 101 123 0.98 4 18 0.007 0.43 11.8 0.2 1 23 127 149 127 149 0.95 5 18 0.0087 0.53 11.5 0.5 1 23 154 177 154 177 0.91 6 18 0.0011 0.068 14.3 1.8 1 23 183 206 183 206 0.93 7 18 0.00061 0.037 15.1 1.2 1 23 213 236 213 236 0.95 8 18 0.0023 0.14 13.3 1.5 1 23 242 264 242 264 0.95 9 18 1.6e-06 0.0001 23.2 0.7 1 23 270 292 270 292 0.99 10 18 0.031 1.9 9.7 3.6 1 23 417 440 417 440 0.97 11 18 6.2 3.8e+02 2.5 0.5 2 23 466 488 465 488 0.87 12 18 0.011 0.68 11.1 0.1 1 23 512 534 512 534 0.98 13 18 0.00038 0.023 15.8 0.2 1 23 538 560 538 560 0.98 14 18 0.00014 0.0083 17.2 1.2 1 23 565 588 565 588 0.96 15 18 0.0028 0.17 13.0 0.2 2 23 595 617 595 617 0.94 16 18 0.3 18 6.6 5.9 1 23 624 647 624 647 0.93 17 18 0.00043 0.027 15.6 5.4 1 23 653 675 653 675 0.97 18 18 4.6e-05 0.0028 18.6 0.8 1 23 681 703 681 703 0.99
Sequence Information
- Coding Sequence
- ATGaagaatttatttatatgcGTGCACTGCGACAGTCAGTTTACAGACCCGGAGCTTTTGAGGCAACATCACAATTTCAACCACAACTCACCGACACTCGCTGAATTAAAGGCAGCAATACCAAAACTGAAGAAACACGAACTAGTTAAAGTCGATATAACCAATCTAAATTGTAAACTTTGCGACGAAGTAGCTACAAGTTTCAATAACCTAAAGCACCACCTAATAGACAGGCACAATTTTAAAGATGACCTGGTAACGGACGACGGCGTCCTCCCGTTCAAAATAAGTAAAAACAACTACTCGTGCGCAATCTGCGAAGTGAAATTCGACGAGTACAAGACTCTGAACCACCACATGAATGTGCATTACCAGAATTTTATTTGCGAGCAGTGCGGCTCGGGATTTATAACTCCGGATCGTTTGAGGACTCATGCGTTTTCTCACGAAACAGGGACGTTCCCCTGTCCGAGCTGCGACAAAGTGTTTCGATCGATGAACGCAAGGAACGAACACCACGCGTCCGTCCACAAGCAAGTGAAGCGACACCGCTGTCCGTATTGTCCGGAAATGTTCAGGAATTACTTCCAAAGGAACAAGCACATAACGGCAGTCCACGGGATGAAATTGAAAGACTTCAAGTGCACCACTTGTCCCAGGGTGTTCACCACGAGCGGGAAATTAAGGTTTCACGTGTCGACTGTGCATTTGAAGATCAAGAGGCACGCTTGCCAAATGTGCGAGTGGAAGTTCTACTCCACGACAGAATTGAAGGATCATATGGTCAGGCATGGCGGAGAGCGCAAATACAAATGCAACGTTTGCGCCAAGGCGTACGCGAGGAAGTATACGCTTAGGGAGCACATGAGAATCCATGAAAACGACAGACGCGCGGACTCTTTACCGACGGATAGGCCGAAGCCGGCTAAACGAATAGTTCCACTGTTTCAAGTGGCCTACGATCGGAGCCTCTGTAAACCTTTGGGGACCGTGACCGCCTTCAGAAAGTTGACCCTGCGAGACAGGACTCGTATACCGTCGCCTTCGTCTGACAGATATCAGACACCGTCGCGCAGTCCGTCACCGTTACCCGTAGTCCGAAGGGATCCAGTCCATGTTTCGGGACCTCCAGTTAAAATCGCACCTGCAGAAAAAGTTACACTACCCAGAGACTCGGATTATCGTCAAAACGCCTTAACACTGTTCGAATTCTCTACGGTCTATCCGTTCGTGTATGGCAACAACAAGTTTAAATGCTTCGTTTGCACCGAGCATTTTCAAGAAACTTCGCTCTTAAGATACCACATGAAGGAACAACACACGTCGTTCGCATCTCTAAAACGATTAGTCAACAATAAAAGGGAGAACATCCTCAAAGTGGATGTGGGTGAGCTGGAATGTAAAGTGTGTGCAGCGAAGCCGAAGGACTTAATGCAGTTGAAGCATCACCTGAAAGAAGACCACCAGAAGATTATAGACCCGGAATTGCAGGATAACTTGATACCCTTTAAGTTGGAACTGGAAGATGGTGTATACAAGTGCGTTATGTGCGAGAAGGCATTCGTGAAAGTGCGGATTCTGATGATCCACATGAACGTGCACTTCAGCAACTATAGCTGCGAGATCTGCGGGTCTGGGTTCATGACGTTGCGATTATTGAAGAAGCACTTAGAAGTGCACGAAACTGGGAATTTCCCTTGCGACAGATGCAACAAATCCTTCAGCACATCCTATAAGAGGACCTTGCATATTAGGGGCGTGCATCTCAAGCAGTATCCGCGACGGTGTCCCATATGCCCAGAGCGGTTCAATTCCAACTATACAAGGACCATACATCTCCAAGACGTCCACAACCAATCCACAAGAGTCCACAAGTGCGAGACTTGCGGGCGTGGATTCAACCTCCGTTACCATTTGATATGCCACAACAGATCTGTGCACTTGCAGGAAAGGAACCACCAGTGCAAAGTCTGCTTGCAGCGTTTCTGTAACAAGGAGACGCTGAAACGGCACATGGTGATTCACACGGGAGAGAAGAATTACAAATGCGATATGTGCGGGATGGCGTTTTTGCGGCGTAAGAACTTAAGAGACCATTTGCGACTCCACAATACCGCCTAA
- Protein Sequence
- MKNLFICVHCDSQFTDPELLRQHHNFNHNSPTLAELKAAIPKLKKHELVKVDITNLNCKLCDEVATSFNNLKHHLIDRHNFKDDLVTDDGVLPFKISKNNYSCAICEVKFDEYKTLNHHMNVHYQNFICEQCGSGFITPDRLRTHAFSHETGTFPCPSCDKVFRSMNARNEHHASVHKQVKRHRCPYCPEMFRNYFQRNKHITAVHGMKLKDFKCTTCPRVFTTSGKLRFHVSTVHLKIKRHACQMCEWKFYSTTELKDHMVRHGGERKYKCNVCAKAYARKYTLREHMRIHENDRRADSLPTDRPKPAKRIVPLFQVAYDRSLCKPLGTVTAFRKLTLRDRTRIPSPSSDRYQTPSRSPSPLPVVRRDPVHVSGPPVKIAPAEKVTLPRDSDYRQNALTLFEFSTVYPFVYGNNKFKCFVCTEHFQETSLLRYHMKEQHTSFASLKRLVNNKRENILKVDVGELECKVCAAKPKDLMQLKHHLKEDHQKIIDPELQDNLIPFKLELEDGVYKCVMCEKAFVKVRILMIHMNVHFSNYSCEICGSGFMTLRLLKKHLEVHETGNFPCDRCNKSFSTSYKRTLHIRGVHLKQYPRRCPICPERFNSNYTRTIHLQDVHNQSTRVHKCETCGRGFNLRYHLICHNRSVHLQERNHQCKVCLQRFCNKETLKRHMVIHTGEKNYKCDMCGMAFLRRKNLRDHLRLHNTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00353357;
- 90% Identity
- iTF_00353357;
- 80% Identity
- -