Cgly013788.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979640.1:4274679-4286567[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00079 0.049 14.7 0.2 2 23 131 152 130 152 0.93 2 15 0.0012 0.071 14.2 2.4 1 23 158 180 158 180 0.96 3 15 0.00013 0.0081 17.2 0.3 1 23 271 293 271 293 0.98 4 15 0.01 0.62 11.3 0.0 3 23 378 399 376 399 0.90 5 15 0.0037 0.23 12.6 0.3 1 23 415 437 415 437 0.94 6 15 0.0037 0.23 12.6 0.3 1 23 473 495 473 495 0.94 7 15 0.0037 0.23 12.6 0.3 1 23 531 553 531 553 0.94 8 15 0.0037 0.23 12.6 0.3 1 23 589 611 589 611 0.94 9 15 0.0037 0.23 12.6 0.3 1 23 647 669 647 669 0.94 10 15 0.0037 0.23 12.6 0.3 1 23 705 727 705 727 0.94 11 15 6.2e-05 0.0038 18.2 0.2 1 23 756 778 756 778 0.98 12 15 0.0012 0.075 14.1 0.2 1 23 784 806 784 806 0.97 13 15 0.0007 0.043 14.9 0.3 1 23 812 834 812 835 0.95 14 15 0.0037 0.23 12.6 0.2 1 23 848 870 848 870 0.97 15 15 0.015 0.91 10.7 0.0 1 20 1023 1042 1023 1045 0.93
Sequence Information
- Coding Sequence
- ATGGAAGCAGAAGAATTCCTCCAGTGGGAGGAAGAAAAGAATAATATAGTGGCAGGTGAAGAAGTAATATGTAGTATAGAAAATGTACAAAGTGTATCATACGTAAACATGACGTCTGAAGAAATTATAGACACTGATCAAATGGCTGCGGAGAATTTGATGTTTCTGTCCCAGGATGTTGTGGGTTACACAGTAAGTGCGGAGGACCCCAATGTGGAGTGCGTCACAGAGGAAGTAATCACTGATGACTGGGTGCTCTCAGGAGGACAGGAAagAGTGGAAGTGCCTTTAGAACATTTGGCAAATCCTGTGCAAGATGTCAAAATTGAGAACGATATTGATGTTCCATTACCAACAGACCAAGATGAATACACAGCGATGCGTCCGTGGCCGTGCGACTTCTGCTCCCGGCGGTTTCGCAAGAAGGCTGCTCTGATGAACCACATGGTGGCGCACCAGAACGACCGGCCGCACGCCTGCAACCTGTGCGGCGTGCGCTACGTGCGCAAGTGCGACCTCATGAACCACCTCAAGGTGCACGCCATGGTGCCGGACACGCCTGACATGGTGGACTACGAAGAAGTAATCGTACCTGAGGTGGTCAAACCAAAGAAAAAGAGAGGCAGGCGGAAAAAGAATCCAGAACCTGTGGagAACGGCGTGTGGGAGCACATGACGTCGGCGCGCACGCAGCAGTGgtcgcggcgcgggcgcacgcCGCCCAGGGCGCCGtccccgccgcgcgcgccgccctcCCCCTCGCCCTCGCCCCCGCCGCctgcgccgccgcccgccgaccccgCGCGCCCCTTCGTGTGCAGGCACTGCGGCGTCGGCTTCGCCCGGGAGAAGGCCCTGCAGTCGCACGCGAGGGTGCACGGCGGGGACTCGCCCGTGGAGTGCGGCGAGTGCGGCGAGCTGTGCTGGTCGCGCGAGGCGCTGCGCACGCACTGCGCCGCGCGCCACCCGCACCtgccgcacgccgcgcccgccgcgcccgccgccgaccaCGCCTACGACGACAACTCGGGCGATGACATGGAGTTCCGACTGTCGCCGACGCCGCACAGCGGCAGCGAGCGCGAGCGGGAGCGCGACCGCGCGGTGGACGTGCGCGGGCCCGAGCTGTTCTGCGGCGACTGCGGCGTGGCGTTCCAGCGCGTCGACCTGCTGCGGCGGCACGTGGCCGCGGCGCACAGCTACAAGAGGCACGACAGCACGAGCAGCACGTGGGAGCAGGAGCACACGTGCGACGTGTGCGGCGAGAGCTGCACCGACGCGCTGCAGCTGCTGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGCTGCTGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGGTACAGTGAGCAGCACGTGGCAGCAGGAGCACACGTGCGACGTGTGCGGCGAGAGCTGCACCGACGCGCTGCAGCTGCTGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGCTGCTGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGGTACAGTGAGCAGCACGTGGCAGCAGGAGCACACGTGCGACGTGTGCGGCGAGAGCTGCACCGACGCGCTGCAGCTGCTGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGCTGCTGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGGTACAGTGAGCAGCACGTGGCAGCAGGAGCACACGTGCGACGTGTGCGGCGAGAGCTGCACCGACGCGCTGCAGCTGCTGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGCTGCTGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGGTACAGTGAGCAGCACGTGGCAGCAGGAGCACACGTGCGACGTGTGCGGCGAGAGCTGCACCGACGCGCTGCAGCTGCTGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGCTGCTGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGGTACAGTGAGCAGCACGTGGCAGCAGGAGCACACGTGCGACGTGTGCGGCGAGAGCTGCACCGACGCGCTGCAGCTGCTGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAacagattaaaaaaaatgtcccgAGGCAAAAATAGCTCATCAACCAACATCGGTGCAAGACAGTTTCCATGTAGAGAATGTgGCAAGGTGTTCGGGTCGCGCAGCTCGCAGCAGATCCACGTGCGCATCCACACGGGCGAGCGGCCCTACGCGTGTCGGTTCTGTTGGAAGGCCTTCGCGGACGGCGGCACGCTGCGCAAACACGAAAGGATTCACACTGGTGAGAAGCCGTACGCGTGCGCGGTGTGCCCGCGCGCCTTCAACCAGCGCGTGGTGCTGCGCGAGCATGTGCGCTCGCACCACTCCGCGCCCGACCGCCGCGCCAACGGTGGATACCAGTACACTTGCGTGGTGTGCGGCCGGTCCCTGCACTCGAGCGCGGAGCTGGTTCAACATCTCATTCAGCACTGCGACGAGAACACCGCCCTGAAGAGGCAACCTCAGAGCGGGCCGAGGAAATACAAGCGGCGACGGAAAATCAAGACCGAGTCGCCCGCTCCGTTGGACTGGGGCCGCGCGTCGccctcgccgccgcgctcgcccgcGCCGCTCCCCGCCCGCTCGCCGTCCCCCTCGCGCTTGCACTCCCCCTCGCGCACCGTGTCGCGCTCCccctcgccgccgccgcgcgccgcccgcccgccgcgcgcgccgcgccgccgccgccgccgcgtgcccgccgcgccgcgccccaaGATGATACACACGGAAGAGCCTCGCCCCAAACCCAAACAGACACGGAGCCGCAGACCGCCCAGACACCCCGCGGACGACCTCCGAGCGATCGGCGCGCAGTCGGCCTCGCCGCCGCCCCCCGCCGCTTCCCCCGCGCCCCTCGCCCCGCTCGCGCCCGACGACGGGCCCTACAAGTGCGAGATGTGCGCCATGGTGTTCCCGCGACGAGACGCCTTGCTGCTCCACGTGCCGGTGCACATATGA
- Protein Sequence
- MEAEEFLQWEEEKNNIVAGEEVICSIENVQSVSYVNMTSEEIIDTDQMAAENLMFLSQDVVGYTVSAEDPNVECVTEEVITDDWVLSGGQERVEVPLEHLANPVQDVKIENDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAMVPDTPDMVDYEEVIVPEVVKPKKKRGRRKKNPEPVENGVWEHMTSARTQQWSRRGRTPPRAPSPPRAPPSPSPSPPPPAPPPADPARPFVCRHCGVGFAREKALQSHARVHGGDSPVECGECGELCWSREALRTHCAARHPHLPHAAPAAPAADHAYDDNSGDDMEFRLSPTPHSGSERERERDRAVDVRGPELFCGDCGVAFQRVDLLRRHVAAAHSYKRHDSTSSTWEQEHTCDVCGESCTDALQLLAHAELHAERPRTNNSCWRTRSCTPSARAPTTGTVSSTWQQEHTCDVCGESCTDALQLLAHAELHAERPRTNNSCWRTRSCTPSARAPTTGTVSSTWQQEHTCDVCGESCTDALQLLAHAELHAERPRTNNSCWRTRSCTPSARAPTTGTVSSTWQQEHTCDVCGESCTDALQLLAHAELHAERPRTNNSCWRTRSCTPSARAPTTGTVSSTWQQEHTCDVCGESCTDALQLLAHAELHAERPRTNNSCWRTRSCTPSARAPTTGTVSSTWQQEHTCDVCGESCTDALQLLAHAELHAERPRTNNRLKKMSRGKNSSSTNIGARQFPCRECGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGYQYTCVVCGRSLHSSAELVQHLIQHCDENTALKRQPQSGPRKYKRRRKIKTESPAPLDWGRASPSPPRSPAPLPARSPSPSRLHSPSRTVSRSPSPPPRAARPPRAPRRRRRRVPAAPRPKMIHTEEPRPKPKQTRSRRPPRHPADDLRAIGAQSASPPPPAASPAPLAPLAPDDGPYKCEMCAMVFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -