Cgly012963.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979639.1:5103684-5108438[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.6e-05 0.00097 20.1 5.1 1 23 6 28 6 28 0.97 2 12 2.6e-05 0.0016 19.4 3.7 1 21 34 54 34 55 0.95 3 12 1.6e-05 0.00097 20.1 5.1 1 23 202 224 202 224 0.97 4 12 2.6e-05 0.0016 19.4 3.7 1 21 230 250 230 251 0.95 5 12 1.6e-05 0.00097 20.1 5.1 1 23 322 344 322 344 0.97 6 12 4e-05 0.0024 18.8 5.7 1 23 350 372 350 372 0.97 7 12 2.1e-05 0.0013 19.7 6.3 1 23 378 400 378 400 0.97 8 12 3.5e-06 0.00021 22.2 5.9 1 23 406 428 406 428 0.98 9 12 4.2e-05 0.0026 18.7 7.8 1 23 434 456 434 456 0.97 10 12 1.1e-05 0.00066 20.6 5.2 1 23 462 484 462 484 0.96 11 12 0.00055 0.033 15.3 0.3 1 23 491 513 491 513 0.96 12 12 0.011 0.67 11.2 5.3 1 23 521 543 521 543 0.99
Sequence Information
- Coding Sequence
- ATGGGGGAGACTCCCCACAAGTGCACGTTCTGCCCGCGAGCCTTCTCCCGCAAGGAGCATCTCAACCAGCACATCCAGCAGCACACCAGCGACACGCCGCACACCTGCACCTACTGCAGCAAGACCTTCACCAGGAAGGAGCACCTCGTCACCCACGTGCGGTACGTTGCAATGTACTCTGTTGTGCAGACAGCATATGGGGGAGACTCCCCACAAGTGCACGTTCTGCCCGCGAGCCTTCTCCCGCAAGGAGCATCTCAACCAGCACATCCAGCAGCACACCGGCGACACGCCGCACACCTGCACCTACTGCAGCAAGACCTTCACCAGGAAGGAGCACCTCGTCACCCACGTGCGGTACGTTGCAATGTACTCTGTTGTGCAGACAGCATACGTGGGAGACTCCCCACAAGTGCACGTTCTGCCCGCGAGCCTTCTCCCGCAAGGAGCATCTCAACCAGCACATCCAGCAGCACACCAGCGACACGCCGCACACCTGCACCTACTGCAGCAAGACCTTCACCAGGAAGGAGCACCTCGTCACCCACGTGCGGTACGTTGCAATGTACTCTGTTGTGCAGACAGCATACGTGGGAGACTCCCCACAAGTGCACGTTCTGCCCGCGAGCCTTCTCCCGCAAGGAGCATCTCAACCAGCACATCCAGCAGCACACCAGCGACACGCCGCACACCTGCACCTACTGCAGCAAGACCTTCACCAGGAAGGAGCACCTCGTCACCCACGTGCGGTACGTAGCAATGTACTCTGTTGTGCAGACAGCATACGTGGGAGACTCCCCACAAGTGCACGTTCTGCCCGCGAGCCTTCTCCCGCAAGGAGCATCTCAACTAGCACATCCAGCAGCATACCGGCGACACGCCGCACACCTGCACCTACTGCAGCAAGACCTTCACCAGGAAGGAGCACCTCGTCACCCACGTGCGCATACGGGGGAGACTCCCCACAAGTGCACGTTCTGCCCGCGAGCCTTCTCCCGCAAGGAGCATCTCAACCAGCACATCCAGCAGCACACCGGCGACACGCCGCACACCTGCACCTACTGCAGCAAGACCTTCATCAGGAAGGAGCACCTCGTCACCCACGTGCGGCAACACACGGGGGAGACTCCGTTCAAGTGCACGTACTGCACCAAGGCGTTCTCCCGCAAGGAGCACCTCACCAACCACGTGCACCTGCACACCGGCGAGACCCCGCACAAGTGCCCCTTCTGCACCAAGACCTTCTCCAGGCGGGAGCACCTCACCAACCACGTCCGGATTCACACGGGCGAGTCGCCTCACCGGTGCGAGTTCTGCCAGAAGACGTTCACGCGCAAGGAGCACCTCACCAACCACCTGAAGCAGCACACGGGGGACACGCCGCACGCGTGCAAGGTGTGCTCCAAGCAGTTCACGAGGAAGGAGCACCTCGTCACGCACATGCGGTCACACAGTTGCGGCGACCGACCGTTCAGTTGCGGTGAATGCGGCAAATCGTTCCCCCTGAAAGGCAATCTGCTGTTTCACGAACGGTCGCACAAAAGCGGCACCGCTAAGCAGTTCCGCTGCGAAATCTGCTCTAAGGAGTTCATGTGCAAAGGTCACCTGGTGTCCCACCGGCGAACGCACGACACGGGTGAAGCTGCGACGAACTCTGAGCCTGTGGCCGACAGCGAGGAGTGCGGCGACTACGCCAAGTGCGAGAAGGATGTCGAAATGCCCGAGAGGAAACACGATATCAGAGGAACAGCAGACAACAGAAGTAACGAAAACAGCGGAACACAAGCTCAGCTGAGTACCGTAATGCAAATAACAAGCCAGCAGCCGGTGCGAGCGGGCGCGGTGACGAGCGCGGCGAGCGTGGCGACCGGCACGTTCACGCACGCGCCGAGCGCGCAGCACCACGCGGGCACCGCCATCGCGCACCACCCCGTCACCGTCAACTACTAG
- Protein Sequence
- MGETPHKCTFCPRAFSRKEHLNQHIQQHTSDTPHTCTYCSKTFTRKEHLVTHVRYVAMYSVVQTAYGGDSPQVHVLPASLLPQGASQPAHPAAHRRHAAHLHLLQQDLHQEGAPRHPRAVRCNVLCCADSIRGRLPTSARSAREPSPARSISTSTSSSTPATRRTPAPTAARPSPGRSTSSPTCGTLQCTLLCRQHTWETPHKCTFCPRAFSRKEHLNQHIQQHTSDTPHTCTYCSKTFTRKEHLVTHVRYVAMYSVVQTAYVGDSPQVHVLPASLLPQGASQLAHPAAYRRHAAHLHLLQQDLHQEGAPRHPRAHTGETPHKCTFCPRAFSRKEHLNQHIQQHTGDTPHTCTYCSKTFIRKEHLVTHVRQHTGETPFKCTYCTKAFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRREHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLKQHTGDTPHACKVCSKQFTRKEHLVTHMRSHSCGDRPFSCGECGKSFPLKGNLLFHERSHKSGTAKQFRCEICSKEFMCKGHLVSHRRTHDTGEAATNSEPVADSEECGDYAKCEKDVEMPERKHDIRGTADNRSNENSGTQAQLSTVMQITSQQPVRAGAVTSAASVATGTFTHAPSAQHHAGTAIAHHPVTVNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -