Cgly022569.2
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979651.1:7558986-7562512[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00095 0.058 14.5 0.8 1 23 97 120 97 120 0.97 2 23 0.11 6.9 8.0 0.9 2 23 147 169 146 169 0.95 3 23 0.0076 0.46 11.7 2.6 1 23 191 213 191 213 0.98 4 23 2.7e-05 0.0017 19.3 0.9 1 23 217 239 217 239 0.98 5 23 0.0036 0.22 12.7 0.1 1 23 273 296 273 296 0.90 6 23 0.00097 0.059 14.5 1.0 1 23 303 326 303 326 0.97 7 23 2.3 1.4e+02 3.9 0.8 1 23 393 415 393 415 0.92 8 23 0.0016 0.096 13.8 0.2 2 23 440 462 439 462 0.96 9 23 0.0011 0.068 14.3 0.2 1 23 484 506 484 506 0.99 10 23 0.0099 0.6 11.3 3.6 1 23 510 532 510 532 0.97 11 23 0.0031 0.19 12.9 0.8 1 23 537 560 537 560 0.92 12 23 3.1 1.9e+02 3.4 2.9 1 23 566 589 566 589 0.93 13 23 9.5 5.8e+02 1.9 0.0 1 11 595 605 595 611 0.84 14 23 0.02 1.2 10.3 0.3 1 23 645 667 645 667 0.96 15 23 0.62 38 5.6 0.9 2 23 691 713 690 713 0.91 16 23 0.0017 0.1 13.7 2.0 3 23 737 757 735 757 0.96 17 23 0.0006 0.037 15.1 2.4 3 23 763 783 762 783 0.97 18 23 0.00083 0.051 14.7 1.4 1 23 790 813 790 813 0.97 19 23 0.00011 0.007 17.4 1.0 1 23 819 842 819 842 0.96 20 23 0.003 0.19 12.9 2.0 1 23 848 871 848 871 0.97 21 23 1.6e-05 0.00099 20.1 0.5 1 23 877 899 877 899 0.98 22 23 4.5e-06 0.00027 21.8 3.5 1 23 905 927 905 927 0.99 23 23 0.00072 0.044 14.9 4.9 1 23 933 955 933 956 0.96
Sequence Information
- Coding Sequence
- ATGCATGGCTTCGGGTTATGGCAGCTGGTCTGGCAATGGAGTAACAAaagtgttattttgtttttaggttCCGCACACGCGGATTCGGGGGATGTAGTGATAGGAGTTAAACGTATTAGGAAGTTAAAGGAAAATGTCTGCGCGAGGCAAATGCGTCGGAGGCGACGCGCTAACAACGAACTTCCCGAGGAGTCCGAGAAACGCATCGCGAAGACGATGATGCGCAAAAACGCGATGACCATTCTTGAATGTTCCACGGCGTGGGCCTTCCGTTGGTTCCAGAGTGCATTCTATTGCTCGTATTGCGATGCGAAATTTGTGGAGCCACATCTCTTGCGTGACCATGTCAATTCTCTCCATTTAAACGATGCCCCAACAAAAAGAATCTTCTCGAAACTAACTGAAAACAACATGGTTAAGGTTGAAGTTACAAACTTAAAATGTAGGCTGTGTCATTATCAATTAGAGAACATTGATGCcttgaaaaaacatttattatcaATCCATGAGAAATCATTTCATGTGGATTTCAATGATGGTGTTCTGCCGTTTAAACTGGAGTCAGATAGATTTAACTGTCAAAAATGCCCGCTGCATTTCACAAGTTTTGCCAAGATCAATGAACACATGAACACACACTATCAGAACTATATTTGCGACACGTGCGGGAAGGCTTTCGTGTCTAAATCGCGGTTCAGGACACACGTCCAATCGCACGAGGTCGGGAGCTTTCCTTGTGGCGATTGTGAGGAAGTTCTGGACACTAGAGCCGCTAGGATGTGCCATAAACTGCGAGTACACAAGAAAGGTATACGTTACACATGTCCCAGATGCCCCGAGGTCTTCACAACGTATTACGCGAGAGCAAAACACTTGGTAGAAGCACACGATCAACAGAAGAGGAGTTATGAGTGTTCCGCCTGCGGGAAGTCGTTCGAGACGAGCTGTAAGCGAGCAGCACACATACGCGTAACCCACAAACCTTTAGAAAAGAGATACGACTGCCCGCAATGCTCATGGTACTTTTTAAGAGCAGAAGACAAAGAAGACTCGGACCTTAAAAGGACAGTCGCAATTAAATGGAAAAGGAAACCACGAATAAAGGATGAGAGAGCAAACGCTGCCATTATACTGAAACATTCAAACGCAATCCCCTTTAGATGGATGCGTGGAAAGTTTATGTGCGCTTACTGCCCTAAGTTATGCGCAGACCTAAACGAAATTAGGTACCATTCTAAAGCACATAACAAACTTGATATTATTGATAAACCAACAGCGCGAAACTCGGTCCCTTTTAAAGTGGATATAACAAGTTTAAAATGCAGTTCATGTGACATTAGTGTCAATAATTTAGATGATCTAAAAACACACCTTCAAACAGAGCATAAAGTAGAATTCCACGCTGATTCCGGTGATGGAGTAACACCTTTTATTTTAACCGGCTCTGAATACAGGTGTGTCGTTTGTGACGTGGTTTTCGAAGCGTGCTGGAATCTCTTGACTCACATGAACGTTCATTACCAAAGTTTCATTTGCCACGCGTGCGGGAAGGGCTATTCGGCTCAACACAAGCTCCGTACGCATCGGAAGGAGCACGAATCCGGTGCTTTTAAATGCCCCAAATGTAGTTTAGTGTTTAAGAATCGAGTATTGAAGAATAGGCACGTTGCTCTGACACATGGGAGTAAGAAAAGGTATCGCTGTCCAGTATGCGACGTGCACTTAGATTCTTGCCATTCCCGCTCCGTGCATTTAGCTAAAGTACATGGTCAGAAGAGGGAGTATAAATGTAGTCTGTGTCCAGCTATTTTCGgGACGGGTTTGAACTTAATATGGAAACGGCGACGCAGGGTATATAACGATCAAAGGCATAATGCCGCCATAATTCTAGAGCACTCTAACGCATGCCCCTTCAGGTGGAAGCGGGGTGCCTTCGCGTGCGCCTACTGTCCGAGGACATTCGGGAATTTTGACGATGTCTACAACCATTCGAGGGAGCACTCCGATCGTCTAGCAGCTATGCAACACGCCCGGCCTTATGACACTGTCAAAGTAGACGTTACCGACCTGCAGTGTACGATATGCGACGACAAAATGACCGATTTGACCCACCTAAAAGAACACCTAATCAACCAGCACCAACAGCCGATAGCAAACCATTTGGACATAGGAGTGACCCCGTTCCTCTTGCGTAACAAAGAGATGATTTGCGTCCATTGCTCGCAGCGGTTCTCTCTATTTTCCAACCTCAATAGCCATATGAACGAGCACTATCCCAACAACATTTGTTTCCATTGCGGCAAGTCATTCGCGGCCGCGCATCGCTTGAAAGCTCATCAGCTCACCCACGCTACCGAAGACCAGACGTACAAATGCACCAAATGTGACGAAGTGTTCGCGACAAAGATCTTGAGGAATTATCACATCAAGTCAAAGCACCTACCGATAAATCCTTACAGATGTCCATACTGCAATCTGTCTTTCAAACGCTATGGGGACAGGGCGCGGCATTTAAAGGAGTTACACGACCAGAAAGTGGAGTACCCTTGCCATTTGTGTCCAGCGGTTTTCTGTTTATCTGACCAGAGGACCAAGCATATACGAAACGTTCATATAAAGAATAAGCAATTCCAGTGCGATTATTGTCCTAGTAAATTCGTTACAGCAGGACAGTTAAAAAGCCATATGATCAAACATACGGACTTGAGGGAATTTCAGTGCGATGTTTGCAAGAAATGCTACGCGAGGTCTAGGACGTTGAAGGAGCATATGCGAATACATAACAACGACAGAAGATTCGTTTGCGGATATTGCAATAACGCCTTCATCCAGAAGTGCAGTCTCAAAAGTCATTTGAAGACGCACCACCCGAATGCAGAGATGTCCAAGACATCGATTGATTGA
- Protein Sequence
- MHGFGLWQLVWQWSNKSVILFLGSAHADSGDVVIGVKRIRKLKENVCARQMRRRRRANNELPEESEKRIAKTMMRKNAMTILECSTAWAFRWFQSAFYCSYCDAKFVEPHLLRDHVNSLHLNDAPTKRIFSKLTENNMVKVEVTNLKCRLCHYQLENIDALKKHLLSIHEKSFHVDFNDGVLPFKLESDRFNCQKCPLHFTSFAKINEHMNTHYQNYICDTCGKAFVSKSRFRTHVQSHEVGSFPCGDCEEVLDTRAARMCHKLRVHKKGIRYTCPRCPEVFTTYYARAKHLVEAHDQQKRSYECSACGKSFETSCKRAAHIRVTHKPLEKRYDCPQCSWYFLRAEDKEDSDLKRTVAIKWKRKPRIKDERANAAIILKHSNAIPFRWMRGKFMCAYCPKLCADLNEIRYHSKAHNKLDIIDKPTARNSVPFKVDITSLKCSSCDISVNNLDDLKTHLQTEHKVEFHADSGDGVTPFILTGSEYRCVVCDVVFEACWNLLTHMNVHYQSFICHACGKGYSAQHKLRTHRKEHESGAFKCPKCSLVFKNRVLKNRHVALTHGSKKRYRCPVCDVHLDSCHSRSVHLAKVHGQKREYKCSLCPAIFGTGLNLIWKRRRRVYNDQRHNAAIILEHSNACPFRWKRGAFACAYCPRTFGNFDDVYNHSREHSDRLAAMQHARPYDTVKVDVTDLQCTICDDKMTDLTHLKEHLINQHQQPIANHLDIGVTPFLLRNKEMICVHCSQRFSLFSNLNSHMNEHYPNNICFHCGKSFAAAHRLKAHQLTHATEDQTYKCTKCDEVFATKILRNYHIKSKHLPINPYRCPYCNLSFKRYGDRARHLKELHDQKVEYPCHLCPAVFCLSDQRTKHIRNVHIKNKQFQCDYCPSKFVTAGQLKSHMIKHTDLREFQCDVCKKCYARSRTLKEHMRIHNNDRRFVCGYCNNAFIQKCSLKSHLKTHHPNAEMSKTSID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -