Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3.9e-06 0.0079 16.8 0.1 18 41 171 191 163 193 0.88

2 5 0.046 92 3.8 0.2 18 41 199 219 195 221 0.85

3 5 0.0057 11 6.7 0.8 16 38 225 248 215 248 0.76

4 5 0.00039 0.78 10.4 0.6 18 40 255 274 251 278 0.89

5 5 0.18 3.5e+02 1.9 1.3 18 40 283 302 275 304 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3.9e-06	0.0079	16.8	0.1	18	41	171	191	163	193	0.88
2	5	0.046	92	3.8	0.2	18	41	199	219	195	221	0.85
3	5	0.0057	11	6.7	0.8	16	38	225	248	215	248	0.76
4	5	0.00039	0.78	10.4	0.6	18	40	255	274	251	278	0.89
5	5	0.18	3.5e+02	1.9	1.3	18	40	283	302	275	304	0.82

Coding Sequence: ATGAGCGTCAACGTGTCCATGAACATGACCATGCACGGCTGCCCGCCCGACCAGCTCTGCTCGCAGGTACAATGGAATCAGAACGCGTCAGCTCCCTCGGTGAACGTCGTGTACCCGCAAACGCAGAACGCCATCCCCACATCCTACCCCGCCGCCACCTACTCCTTCACCGCAGACTTCCGAGCGCCCAACCAGTCGGACCCCCTCATCACCGCCACCTCCACCTTTAAACCCCTACAATTGCAAAACCCCCAGAAAGCCAACCCAAATTACTTGTTCCAACAAAAGCCAAACTTCTCGAGCCAGAAGAACTTGGGGCCGATGTTGAAGAGATCTCCGTCGAAGATGTATATGCAGGAACAGAAGGATCAAATGGGGAACGGTTACATACTGAACCACCAGGGGCAGATGCATCAGGATTTCGGTTATTCGGCGTGTGTGAATACGCCGGGAAAAGTGCAGgtCGGAGCTCTCAGTGGTTGTTCAGAGGACGACGAGCAGAAGCCGAATCTTTGCCGGATCTGCGGCAAAACGTACGCTCGGCCCAGCACGCTGAAGACACATCTGCGCACGCACTCGGGCGAGCGCCCGTACCGGTGCGGCGACTGCAACAAGAGCTTCTCGCAGGCTGCCAATCTCACCGCTCACGTTAGAACGCATACGGGGCAGAAACCTTTCAGGTGTCCAATATGCGACCGCCGGTTCAGTCAAAGTTCCAGCGTCACAACCCACATGAGGACACATTCGGGGGAACGACCCTACCAATGTCGTTCCTGCAAGAAAGCGTTCTCGGACAGCTCCACACTGACCAAGCACTTGCGAATACACTCCGGGGAAAAACCTTACCAGTGTAAACTTTGTCTTCTCAGGTTTTCCCAATCTGGCAACTTGAACAGGCACATGCGCGTGCACGGCAATATGGCGGGCGGAATGCTCGCCTGA
Protein Sequence: MSVNVSMNMTMHGCPPDQLCSQVQWNQNASAPSVNVVYPQTQNAIPTSYPAATYSFTADFRAPNQSDPLITATSTFKPLQLQNPQKANPNYLFQQKPNFSSQKNLGPMLKRSPSKMYMQEQKDQMGNGYILNHQGQMHQDFGYSACVNTPGKVQVGALSGCSEDDEQKPNLCRICGKTYARPSTLKTHLRTHSGERPYRCGDCNKSFSQAANLTAHVRTHTGQKPFRCPICDRRFSQSSSVTTHMRTHSGERPYQCRSCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGNMAGGMLA

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00025389; iTF_00025420; iTF_00796724; iTF_00796688; iTF_00958808; iTF_00958839; iTF_00167065; iTF_00167127; iTF_00985340; iTF_00985389;
90% Identity: iTF_00288255;
80% Identity: -