Cgly022041.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- ttk
- Assembly
- GCA_963855885.1
- Location
- OY979651.1:4846633-4875893[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.3e-05 0.076 13.4 0.0 10 38 424 452 423 456 0.90 2 13 4.2e-05 0.038 14.3 0.1 9 38 467 496 467 500 0.90 3 13 4.2e-05 0.038 14.3 0.1 9 38 511 540 511 544 0.90 4 13 4.2e-05 0.038 14.3 0.1 9 38 555 584 555 588 0.90 5 13 4.2e-05 0.038 14.3 0.1 9 38 599 628 599 632 0.90 6 13 4.2e-05 0.038 14.3 0.1 9 38 643 672 643 676 0.90 7 13 4.2e-05 0.038 14.3 0.1 9 38 687 716 687 720 0.90 8 13 0.00085 0.77 10.1 0.0 17 38 731 753 726 757 0.81 9 13 4.2e-05 0.038 14.3 0.1 9 38 768 797 768 801 0.90 10 13 0.0011 1 9.8 0.0 17 38 812 833 807 837 0.82 11 13 0.0011 1 9.8 0.0 17 38 848 869 843 873 0.82 12 13 4.2e-05 0.038 14.3 0.1 9 38 884 913 884 917 0.90 13 13 4.2e-05 0.038 14.3 0.1 9 38 928 957 928 961 0.90
Sequence Information
- Coding Sequence
- ATGGCGCCGCAGCAGTACTGCCTGCGGTGGAAGCACCACCACTCCAACGTGCAGAGCATGTTCGCGCAGCTGCTGGAGAAAGAACGCTTCtgcgacgtgacgctgtactgCTCACCGAGCTTCGCGACGCAGGTGCCCAACCAGGACACGGTGGAGCCACAGAACATCCGCGGGGTGTCCCTCAGGGCGCACAGGGTGGTGCTGGCGGCGTGCTCGGAGCTGCTCGGCGCGCTGCTCGGCGCGCACGACGAGCTCGGCGAGCCGGTGCTGGTGATCGACGGCGCGGAGCCGCGGCACCTGCGCGCGCTGCTCGACTACATGTACACCGGCGAGATGAACGTGCACCACTCGCAGCTGGCCGCGTTGCTGAAGACGGCGGAGGAGCTGCGCATCAAGGGGCTCACGGACATTCGGTGGAACAATAAGGACGAGCCGCCCGACTGCGCCACAGGCGCAGTTACGACAACGCCTCACGAAAAAACGTCTCCAGACAGCAGAGCGTGCGACACCAGACAAGAAGACAAACACACAGACAGACTAACAGACACGGGACACGACGCGAAACCGCCCGACGTTAAAACGCCGAACGTTAAAAACACGTACGACGTTAAAACGCAGAATGTTAAGAATACGCAGAATGTTAAAAATACGCAGAACGTTAAGAATATGCATGACGTTAAAATCCCGATTGTCAAAATACACGACGTATTGAAATGCGAAACAAAGACGGCGGAGCAGGAATGTGCGAGGGAGATGGATGATCGTGAGGAAGTTGTGGAGAAGTTTAATGTGAACGGAGGCCCTCCACCACTAATTAAGCTGTCCACCAAGGAGAAACTGACTAGCCCTATCAAAAAGGACACATCAGACAGCTCGCAGTTTGCCCCCCCACAGGACATCACGGCGGAGAGGGTGGTGGGGTGGGGCGCGGGCGACGAGGAGGCGCACTGGTCGCGCGAGCAGTCGGCCGACCAGTCGGACGACGAGTGGGCCGACCCGCCCGCCGACATCGGCTCCTTCCTGCGCACCAAGCTGCGCGTGGACGGCGACAACAGCGCAGACGAGGAGTCAGACGGAAGCGCGTGCGGCGCCGTCGCGCAGGCGTCCTCCTCCTCATCGACAACCAGCACAGCGCATATAGACTATATTAAACCCGGCAAGCAGGGCGTGCAGGACCCGCGCTTCATGGACGTGGTGAAGTTAAACGACTATCTACAGCACGGCAGGCGCCCGCAGTTCTGGGAGGAGAACTACGTCAAGCGGgTGATGGAAGCGGTCAGGGTCAAGGAGTTGGAGATGAAGCAGGCCGCCGAGATCCTGGGCGTCAGCTACGGCACTCTGTACGGGCGGTACCGCGACGTGTACGGCTGCATCAACAGGCCTTACAGACTCCAGCTGGTAGCAGCGGTCAGGGTCGAGGAGTTGCAGGTGAAGCAGGCCGCCGAGATCCTGGGCGTCAGCTACGGCACTCTGTACGGGCGGTACCGCGACGTGTACGGCTGCATCAACAGGCCTTACAGACTCCAGCTGGTAGCAGCGGTCAGGGTCGAGGAGTTGCAGGTGAAGCAGGCCGCCGAGATCCTGGGCGTCAGCTACGGCACTCTGTACGGGCGGTACCGCGACGTGTACGGCTGCATCAACAGGCCTTACAGACTCCAGCTGGTAGCAGCGGTCAGGGTCGAGGAGTTGCAGGTGAAGCAGGCCGCCGAGATCCTGGGCGTCAGCTACGGCACTCTGTACGGGCGGTACCGCGACGTGTACGGCTGCATCAACAGGCCTTACAGACTCCAGCTGGTAGCAGCGGTCAGGGTCGAGGAGTTGCAGGTGAAGCAGGCCGCCGAGATCCTGGGCGTCAGCTACGGCACTCTGTACGGGCGGTACCGCGACGTGTACGGCTGCATCAACAGGCCTTACAGACTCCAGCTGGTAGCAGCGGTCAGGGTCGAGGAGTTGCAGGTGAAGCAGGCCGCCGAGATCCTGGGCGTCAGCTACGGCACTCTGTACGGGCGGTACCGCGACGTGTACGGCTGCATCAACAGGCCTTACAGACTCCAGCTGGTAGCAGCGGTCAGGGTCGAGGAGTTGCAGGTGAAGCAGGCCGCCGAGATCCTGGGCGTCAGCTACGGCACTCTGTACGGGCGGTACCGCGACGTGTACGGCTGCATCAACAGGCCTTACAGGGTCGAGGAGTTGCAGGTGAAGCAGGCCGCCGAGATCCTGGGCGTCAGCTACGGCACTCTGTACGGGCGGTACCACCGCGACGTGTACGGCTGCATCAACAGGCCTTACAGACTCCAGCTGGTAGCAGCGGTCAGGGTCGAGGAGTTGCAGGTGAAGCAGGCCGCCGAGATCCTGGGCGTCAGCTACGGCACTCTGTACGGGCGGTACCGCGACGTGTACGGCTGCATCAACAGGCCTTACAGGGTCGAGGAGTTGCAGGTGAAGCAGGCCGCCGAGATCCTGGGCGTCAGCTACGGCACTCTGTACGGGCGGTACCGCGACGTGTACGGCTGCATCAACAGGCCTTACAGGGTCGAGGAGTTGCAGGTGAAGCAGGCCGCCGAGATCCTGGGCGTCAGCTACGGCACTCTGTACGGGCGGTACCGCGACGTGTACGGCTGCATCAACAGGCCTTACAGACTCCAGCTGGTAGCAGCGGTCAGGGTCGAGGAGTTGCAGGTGAAGCAGGCCGCCGAGATCCTGGGCGTCAGCTACGGCACTCTGTACGGGCGGTACCGCGACGTGTACGGCTGCATCAACAGGCCTTACAGACTCCAGCTGGTAGCAGCGGTCAGGGTCGAGGAGTTGCAGGTGAAGCAGGCCGCCGAGATCCTGGGCGTCAGCTACGGCACTCTGTACGGGCGGTACCGCGACGTGTACGGCTGCATCAACAGGCCTTACAGGACGGCGCGCGAGTTCTGGCAGGCGAAGGGCCCGTCGGGCGTGCTGGACCGGCTGCAGCGCGGCGACCTGGGCATCGAGGCGGCCGCGCTCGCGCTCGGCGTGCTGCCCAACAACCTCGCGGCGTACGTGGCCGACGCGCAAGACAAAGaaTTCGAGATCCCGATAGAGATAGACCCCAACGTGAAGATGCGCGGTCGGCCCGTGGGCTCCACTAACGCCTCGCCCGCCGCGCAGAAGTCGACCAAGAAAAGTGACAAGGGCAAGAAGGTGGTCGTTGGCAGCCTGACGGACGAGGACCCGATCCCCGCCAGTGTGATCACTACCCACGAGAAGGCCATCTCGTCCCAGCCGCCGGCGAGCGGCAAATGGCCGTCGATACGCGTGGCGTCGCTGGACTCGCTACGCGGCACGGagccgccgccgtcgccgccctcgcCCGCCGCCTCGCCGTCGCCCTCGCAGCTCATGCGCACGCGCCCCGACCTCACCATCGTGGCCGCGAGGCACGCGCGCGCCGACTCGTGA
- Protein Sequence
- MAPQQYCLRWKHHHSNVQSMFAQLLEKERFCDVTLYCSPSFATQVPNQDTVEPQNIRGVSLRAHRVVLAACSELLGALLGAHDELGEPVLVIDGAEPRHLRALLDYMYTGEMNVHHSQLAALLKTAEELRIKGLTDIRWNNKDEPPDCATGAVTTTPHEKTSPDSRACDTRQEDKHTDRLTDTGHDAKPPDVKTPNVKNTYDVKTQNVKNTQNVKNTQNVKNMHDVKIPIVKIHDVLKCETKTAEQECAREMDDREEVVEKFNVNGGPPPLIKLSTKEKLTSPIKKDTSDSSQFAPPQDITAERVVGWGAGDEEAHWSREQSADQSDDEWADPPADIGSFLRTKLRVDGDNSADEESDGSACGAVAQASSSSSTTSTAHIDYIKPGKQGVQDPRFMDVVKLNDYLQHGRRPQFWEENYVKRVMEAVRVKELEMKQAAEILGVSYGTLYGRYRDVYGCINRPYRLQLVAAVRVEELQVKQAAEILGVSYGTLYGRYRDVYGCINRPYRLQLVAAVRVEELQVKQAAEILGVSYGTLYGRYRDVYGCINRPYRLQLVAAVRVEELQVKQAAEILGVSYGTLYGRYRDVYGCINRPYRLQLVAAVRVEELQVKQAAEILGVSYGTLYGRYRDVYGCINRPYRLQLVAAVRVEELQVKQAAEILGVSYGTLYGRYRDVYGCINRPYRLQLVAAVRVEELQVKQAAEILGVSYGTLYGRYRDVYGCINRPYRVEELQVKQAAEILGVSYGTLYGRYHRDVYGCINRPYRLQLVAAVRVEELQVKQAAEILGVSYGTLYGRYRDVYGCINRPYRVEELQVKQAAEILGVSYGTLYGRYRDVYGCINRPYRVEELQVKQAAEILGVSYGTLYGRYRDVYGCINRPYRLQLVAAVRVEELQVKQAAEILGVSYGTLYGRYRDVYGCINRPYRLQLVAAVRVEELQVKQAAEILGVSYGTLYGRYRDVYGCINRPYRTAREFWQAKGPSGVLDRLQRGDLGIEAAALALGVLPNNLAAYVADAQDKEFEIPIEIDPNVKMRGRPVGSTNASPAAQKSTKKSDKGKKVVVGSLTDEDPIPASVITTHEKAISSQPPASGKWPSIRVASLDSLRGTEPPPSPPSPAASPSPSQLMRTRPDLTIVAARHARADS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00354318;
- 90% Identity
- iTF_00354318;
- 80% Identity
- iTF_00354318;