Cgly010398.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979636.1:761997-767215[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 4.4e-11 4e-08 33.5 0.0 4 39 172 208 169 212 0.89 2 7 6.6e-11 6.1e-08 32.9 0.3 2 39 224 261 223 264 0.92 3 7 8e-15 7.3e-12 45.4 0.0 2 45 279 323 278 323 0.96 4 7 7.3e-18 6.7e-15 55.2 0.0 1 42 330 372 330 373 0.95 5 7 2.1e-05 0.019 15.3 0.1 22 42 376 397 374 398 0.93 6 7 1.1e-10 9.9e-08 32.2 0.0 12 42 464 496 462 497 0.89 7 7 1.1e-10 9.9e-08 32.2 0.0 12 42 563 595 561 596 0.89
Sequence Information
- Coding Sequence
- ATGTACGTGTACTGCAGTGCGTGGAAGGCGCGCTGGAAGAGCTGGTACCGGCGCCGGCGGGGCCCGCAGCCACGCCCGTCTGCGAGCAGCCCCCGGCCACCTATGAAGCCTCCTTTGCGACCCTCGAGCCTGCCTCCCGCGCTGACACTCTGGTATGTACGTGTACTGCAGTGCGTGGAAGGCGCGCTGGAAGAGCTGGTACCGGCGCCGGCGGGGCCCGCAGCCACGCCCGTCTGCGAGCAGCCCCCGGCCACCTATGAAGCCTCCTTTGCGACCCTCGAGCCTGCCTCCCGCGCTGACACTCTGGGTTCATCGCTGATCGACAGGCATATAAAAATGATGACTGCGAACGAAGTGGCCGACTCATCAGACTTTGTACCGCTCATGGCTATCAAGGATGAGCCATCGTCCGAAGgagAGCAACAACACTTGAGTGGAGACGACACTAGCGACTCCAGCGGGCCGCCGCAGGAGTCTGCGAGTCGCGGCAGTCCCAAGAGCTGGACCCAGCAAGACATGGAGAAGGCGCTGGAAGCCTTGAGGAAGCATCACATGAGCTTGACTAAGGCTTCGGCGACATACGGTATACCGTCAACGACCCTGTGGCAGCGAGCGCACCGACTGGGCATCGACACTCCTAAGAAGGAAGGCGCCTCCAAGTCCTGGAGCGAGGCAGACCTGCGGGGAGCACTGCACGCGTTGCGAGCCGGCGCCATTTCCGCCAACAAGGCCAGCAAGGCGTACGGTATCCCCAGCAGTACTCTGTACAAGATAGCTCGTCGCGAAGGCATCAGGCTGGCGGCGCCCTTCAACGCCGCTCCCACTGCGTGGCGGCGCGCGGACCTGGAGCGCGCGCTGCAGGCGATACGGTGCGGGGCGGCCTCCGTGCAGCGAGCCGCCACACAGTTCGGAATACCCACGGGCACTCTGTACGGGCGGTGTAAGCGGGAAGGCATCGAGTTGTCTCGCTCCAACCCGACGCCGTGGTCTGAGGACGCGATGGGAGAGGCGCTAGAAGCCGTCCGGGTGGGTCAGATGTCCATCAACCAGGCGGCGATCCACTACAACCTGCCCTACTCGTCGCTGTACGGCCGCTTCAAGCGCTGCAAGTACCAGCCCGCGCCGGCGGCGATCCACTACAACCTGCCCTACTCGTCGCTGTACGGCCGCTTCAAGCGCTGCAAGTACCAGCCCGCGCCGGTGAGTCTATCGCTGAGCTATCACAGCACAGCTCTCACTACTGTGCAGGGTGGGTCAGATGTCCATCGACCAGGCGGCGATCCACTACAACCTGCCCTACTCGTCGCTGTACGGCCGCTTCAAGCGCTGCAAGTACCAGCCCGCGCCGGTGAGTCTATCGCTGAGCTATCACAGCACAGCTCTCACTACTGTGCAGGGGTGGGTCAGATGTCCATCGACCAGGCGGCGATCCACTACAACCTGCCCTACTCGTCGCTGTACGGCCGCTTCAAGCGCTGCAAGTACCAGCCCGCGCCGGTGAGTCTATCGCTGAGCTATCACAGCACAGCTCTCACTACTGTGCAGGGTGGGTCAGATGTCCATCGACCAGGCGGCGATCCACTACAACCTGCCCTACTCGTCGCTGTACGGCCGCTTCAAGCGCTGCAAGTACCAGCCCGCGCCGGTGAGTCTATCGCTGAGCTATCACAGCACAGCTCTCACTACTGTGCAGGGGTGGGTCAGATGTCCATCGACCAGGCGGCGATCCACTACAACCTGCCCTACTCGTCGCTGTACGGCCGCTTCAAGCGCTGCAAGTACCAGCCCGCGCCGAACCAACCGATACAACAAGACATTCCGCCACACGCCGACACAGAGAGCCAACCACAGGAGCTATATTACCAGGCGATGTCGCACACGGACGCGATGCTAACCGACGATCACGTACAACACCCTTTCTTTAACGACATAGAAACGCCGCACCTTCAGTACGCACCGATGTACTACACACACTGCAACGTGTCGAGCTGA
- Protein Sequence
- MYVYCSAWKARWKSWYRRRRGPQPRPSASSPRPPMKPPLRPSSLPPALTLWYVRVLQCVEGALEELVPAPAGPAATPVCEQPPATYEASFATLEPASRADTLGSSLIDRHIKMMTANEVADSSDFVPLMAIKDEPSSEGEQQHLSGDDTSDSSGPPQESASRGSPKSWTQQDMEKALEALRKHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQPAPAAIHYNLPYSSLYGRFKRCKYQPAPVSLSLSYHSTALTTVQGGSDVHRPGGDPLQPALLVAVRPLQALQVPARAGESIAELSQHSSHYCAGVGQMSIDQAAIHYNLPYSSLYGRFKRCKYQPAPVSLSLSYHSTALTTVQGGSDVHRPGGDPLQPALLVAVRPLQALQVPARAGESIAELSQHSSHYCAGVGQMSIDQAAIHYNLPYSSLYGRFKRCKYQPAPNQPIQQDIPPHADTESQPQELYYQAMSHTDAMLTDDHVQHPFFNDIETPHLQYAPMYYTHCNVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -