Carc025181.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072081.1:936763-963387[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.2 2.4e+02 3.3 0.4 1 16 465 480 465 481 0.86 2 19 3.2 2.4e+02 3.3 0.4 1 16 514 529 514 530 0.86 3 19 3.2 2.4e+02 3.3 0.4 1 16 563 578 563 579 0.86 4 19 3.2 2.4e+02 3.3 0.4 1 16 612 627 612 628 0.86 5 19 4.3 3.2e+02 3.0 0.4 1 16 661 676 661 677 0.86 6 19 3.2 2.4e+02 3.3 0.4 1 16 710 725 710 726 0.86 7 19 3.2 2.4e+02 3.3 0.4 1 16 759 774 759 775 0.86 8 19 3.2 2.4e+02 3.3 0.4 1 16 808 823 808 824 0.86 9 19 3.2 2.4e+02 3.3 0.4 1 16 857 872 857 873 0.86 10 19 3.2 2.4e+02 3.3 0.4 1 16 906 921 906 922 0.86 11 19 3.2 2.4e+02 3.3 0.4 1 16 955 970 955 971 0.86 12 19 2.2 1.7e+02 3.8 0.4 1 17 1004 1020 1004 1021 0.88 13 19 3.2 2.4e+02 3.3 0.4 1 16 1076 1091 1076 1092 0.86 14 19 0.0051 0.38 12.1 3.9 1 23 1125 1147 1125 1147 0.99 15 19 0.039 2.9 9.4 1.6 1 23 1165 1188 1165 1188 0.92 16 19 0.016 1.2 10.6 0.4 2 23 1195 1216 1194 1216 0.95 17 19 0.00053 0.04 15.2 0.8 2 23 1224 1246 1224 1246 0.96 18 19 0.00019 0.014 16.6 6.5 1 23 1256 1278 1256 1278 0.97 19 19 2.8e-05 0.0021 19.3 0.2 1 23 1283 1305 1283 1305 0.98
Sequence Information
- Coding Sequence
- ATGGCCTTGTGCGAGGGACAACTGGAGACAGCCATGCATATCAACGGGGCGGAGTCTGCGGACGAGCAGCATTCTCCCGACAAGAAGCCCGAGCCCAATGGAGACATATACGGTGATTATATCTGGAACCTTTTATCCATACTAGCAGTTAACGTGTGCCAAGTACCCCCATTGCCACTCAGTGTGGACTACCGGTCTCCTGTCTCCCATTTTGTCCCCCCAGCCGTGGAGCTGTACGCAGCCAGACATAAGCCCGAAATCAATGTTGCCGCTCCCCCGTCCGAGACCCCCCCTCCTGTCAAACGGAAGAGGGGGCGGCCCCGGATTGACAAGACGAGCCCCGAGTACCTGGCGAACTTGGCTGCCAGGAAACAGGCCAGGGAAATGGCTGCCGTCATGAACAACCGGCAGGCGGAGTCGGGGGAAAAGCGCAAGCGAGGTCGGCCGCGCCTCGACAAAACCAGCCCGGAATACTTGGCCAGAAAACGTGCAAGGGAAATGGAGGCCTTAGAAAAGAAAGCTAAGAGGGAATACAGGAGACGTACTACTGGTGATTCAGCCGCGTCATCCTCAGCCGGCGAGTCCACAACGCGCGTCAAACGCAAATATACTAAGAGAGCCCCGAGCGCCAAGAAGGACGCTACGGCCAACCCAGAGCGCGTCAAAGGCAAGAGGGGCAGGCCGAGGAAGAATGTGGACCAACGGCCGCCGCAGCATCAACAGCCGAAGATCCGCGTTCGCAACAATCTGATGCCCCTGAACTCGGAACCCATCACCgtcgacagcgacgacgaacctGACCTTGgATCCCCGAGCCAAGCGTCCGACTCCCTAAGTCTGGACGAGAATCTTCGCGCTTTGAGACATATACACGAAAAATACGCGAATCTCGACAAGGACGACCTATACGGTGCTCACTTGCTGGCGGCGCAGTTCAAGAAACCACCGATGGACCAAGTGCAGAGACTGGCTAGAGATGAAGCGGACGAAGTTTTGTCCATTAGGAGCTCTGAGGGTGGCTCTTCAGTCCAGGAACTGGATAGAACAGTTGAGAAGTTGGAAGACAGTTCCAATTCTGACTCTGACAGTAGTTCGGGATCAAGCAGTTCAtcatcgtcgtcttcgtctTCATCATCAGACAGCTCGAGCTCCTCGGACAGTTCTGACAGCGAGTCTGATGATGAGGGGAAACAGAAGAACCCTGATCCACCCTCCATCACCAACCTCCCCGAAGAGGACAGCACGTCCTTCGGCGCGTGGTCCTACGGCCCCCAATCAGGGACCAACACAGACACGGAGACCGACTCCGACCCGGAGCGGACCGCGGCCAGCGGACCCGCGCCCCAGCACGACGAGATCAGCGAGTCGGAGAACGAGTCCGCAGACAAGAGCTTCCAGTGCCACGTGTGTCGCAAGTGGTACTCCACCAGGGTCACCCTCAATGGTACTCCACCAGGGTCACCCTCAAGTGAGTACAGCGGGCCCGCGCCCCAGCACGACGAGATCAGCGAGTCGGAGAACGAGTCCGCAGACAAGAGCTTCCAGTGCCACGTGTGTCGCAAGTGGTACTCCACCAGGGTCACCCTCAATGGTACTCCACCAGGGTCACCCTCAAGTGAGTACAGCGGGCCCGCGCCCCAGCACGACGAGATCAGCGAGTCGGAGAACGAGTCCGCAGACAAGAGCTTCCAGTGCCACGTGTGTCGCAAGTGGTACTCCACCAGGGTCACCCTCAATGGTACTCCACCAGGGTCACCCTCAAGTGAGTACAGCGGGCCCGCGCCCCAGCAGGACGAGATCAGCGAGTCGGAGAACGAGTCCGCAGACAAGAGCTTCCAGTGCCACGTGTGTCGCAAGTGGTACTCCACCAGGGTCACCCTCAATGGTACTCCACCAGGGTCACCCTCAAGTGAGTACAGCGGGCCCGCGCCCCAGCACGACGAGATCAGCGAGTCGGAGAACGAGTCCGCAGACAAGAGCTTCCGGTGCCACGTGTGTCGCAAGTGGTACTCCACCAGGGTCACCCTCAATGGTACTCCACCAGGGTCACCCTCAAGTGAGTACAGCGGGCCCGCGCCCCAGCAGGACGAGATCAGCGAGTCGGAGAACGAGTCCGCAGACAAGAGCTTCCAGTGCCACGTGTGTCGCAAGTGGTACTCCACCAGGGTCACCCTCAATGGTACTCCACCAGGGTCACCCTCAAGTGAGTACAGCGGGCCCGCGCCCCAGCACGACGAGATCAGCGAGTCGGAGAACGAGTCCGCAGACAAGAGCTTCCAGTGCCACGTGTGTCGCAAGTGGTACTCCACCAGGGTCACCCTCAATGGTACTCCACCAGGGTCACCCTCAAGTGAGTACAGCGGGCCCGCGCCCCAGCAGGACGAGATCAGCGAGTCGGAGAACGAGTCCGCAGACAAGAGCTTCCAGTGCCACGTGTGTCGCAAGTGGTACTCCACCAGGGTCACCCTCAATGGTACTCCACCAGGGTCACCCTCAAGTGAGTACAGCGGGCCCGCGCCCCAGCACGACGAGATCAGCGAGTCGGAGAACGAGTCCGCAGACAAGAGCTTCCAGTGCCACGTGTGTCGCAAGTGGTACTCCACCAGGGTCACCCTCAATGGTACTCCACCAGGGTCACCCTCAAGTGAGTACAGCGGGCCCGCGCCCCAGCAGGACGAGATCAGCGAGTCGGAGAACGAGTCCGCAGACAAGAGCTTCCAGTGCCACGTGTGTCGCAAGTGGTACTCCACCAGGGTCACCCTCAATGGTACTCCACCAGGGTCACCCTCAAGTGAGTACAGCGGGCCCGCGCCCCAGCAGGACGAGATCAGCGAGTCGGAGAACGAGTCCGCAGACAAGAGCTTCCAGTGCCACGTGTGTCGCAAGTGGTACTCCACCAGGGTCACCCTCAATGGTACTCCACCAGGGTCACCCTCAAGTGAGTACAGCGGGCCCGCGCCCCAGCACGACGAGATCAGCGAGTCGGAGAACGAGTCCGCAGACAAGAGCTTCCAGTGCCACGTGTGTCGCAAGTGGTACTCCACCAGGGTCACCCTCAACACGACGAGATCAGCGAGTCGGAGAACGAGTCCGCAGACAAGAGCTTCCAGTGCCACGTGTGTCGCAAGTGGTACTCCACCAGGGTCACCCTCAAGTGAGTACAGCGGGCCCGCGCCCCAGCACGACGAGATCAGCGAGTCGGAGAACGAGTCCGCAGACAAGAGCTTCCAGTGCCACGTGTGTCGCAAGTGGTACTCCACCAGGGTCACCCTCAATGGTACTCCACGAGGGTCACCCTCAAGTGAGTACAGCGGGCCCGCGCCCCAGCACGACGAGATCAGCGAGTCGGAGAACGAGTCCGCAGACAAGAGCTTCCAGTGCCACGTGTGTCGCAAGTGGTACTCCACCAGGGTCACCCTCAAAATACACCGAAGATCCCATCAGAACAAGGGCGGGGGCAATTCCAACTCCCGCTCCCGTTCCTCCGACCGTTATGAGTGCGACTGTTGTAACGAGACCTTCAGCCGCCGCGAGAAGCTGTACGAGCACAGGGCGGAAGCTCATCGCGGCGCCATGACAGTTCGGTGCGAGGTCTGCCGGAAGTGCTTCGAGGACGACGCAGAGCTGGCGGCCCATGACCGTACCCACACTGCCGATGAGCGAGCTGGCCGGTGCTCCGAGTGCGGCAGCTCGTTCGGGCGCTACGAGCAGCTGCGCAGGCACCGCTCGAGCGCGCACCCGTCGTCCGCGCCGTCGCGCCTGCCGCACGTGTGCGCGCAGTGCGGCAAGCGGTTCACGCACACGCACTCGCTCACGCGGCACATACAGAACCACGCGAAGCAGCTCTACAGATGCGTCGTGTGCAAGGCGTCGTTCACGCGCGCGGATCAGCTGGCGCAGCACCTCAACAGCCATCTGGCGAACTACAAGCGCCTAAAGCAGTAG
- Protein Sequence
- MALCEGQLETAMHINGAESADEQHSPDKKPEPNGDIYGDYIWNLLSILAVNVCQVPPLPLSVDYRSPVSHFVPPAVELYAARHKPEINVAAPPSETPPPVKRKRGRPRIDKTSPEYLANLAARKQAREMAAVMNNRQAESGEKRKRGRPRLDKTSPEYLARKRAREMEALEKKAKREYRRRTTGDSAASSSAGESTTRVKRKYTKRAPSAKKDATANPERVKGKRGRPRKNVDQRPPQHQQPKIRVRNNLMPLNSEPITVDSDDEPDLGSPSQASDSLSLDENLRALRHIHEKYANLDKDDLYGAHLLAAQFKKPPMDQVQRLARDEADEVLSIRSSEGGSSVQELDRTVEKLEDSSNSDSDSSSGSSSSSSSSSSSSSDSSSSSDSSDSESDDEGKQKNPDPPSITNLPEEDSTSFGAWSYGPQSGTNTDTETDSDPERTAASGPAPQHDEISESENESADKSFQCHVCRKWYSTRVTLNGTPPGSPSSEYSGPAPQHDEISESENESADKSFQCHVCRKWYSTRVTLNGTPPGSPSSEYSGPAPQHDEISESENESADKSFQCHVCRKWYSTRVTLNGTPPGSPSSEYSGPAPQQDEISESENESADKSFQCHVCRKWYSTRVTLNGTPPGSPSSEYSGPAPQHDEISESENESADKSFRCHVCRKWYSTRVTLNGTPPGSPSSEYSGPAPQQDEISESENESADKSFQCHVCRKWYSTRVTLNGTPPGSPSSEYSGPAPQHDEISESENESADKSFQCHVCRKWYSTRVTLNGTPPGSPSSEYSGPAPQQDEISESENESADKSFQCHVCRKWYSTRVTLNGTPPGSPSSEYSGPAPQHDEISESENESADKSFQCHVCRKWYSTRVTLNGTPPGSPSSEYSGPAPQQDEISESENESADKSFQCHVCRKWYSTRVTLNGTPPGSPSSEYSGPAPQQDEISESENESADKSFQCHVCRKWYSTRVTLNGTPPGSPSSEYSGPAPQHDEISESENESADKSFQCHVCRKWYSTRVTLNTTRSASRRTSPQTRASSATCVASGTPPGSPSSEYSGPAPQHDEISESENESADKSFQCHVCRKWYSTRVTLNGTPRGSPSSEYSGPAPQHDEISESENESADKSFQCHVCRKWYSTRVTLKIHRRSHQNKGGGNSNSRSRSSDRYECDCCNETFSRREKLYEHRAEAHRGAMTVRCEVCRKCFEDDAELAAHDRTHTADERAGRCSECGSSFGRYEQLRRHRSSAHPSSAPSRLPHVCAQCGKRFTHTHSLTRHIQNHAKQLYRCVVCKASFTRADQLAQHLNSHLANYKRLKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -