Carc025490.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072081.1:4707204-4726088[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.028 2 9.8 0.0 2 23 252 273 251 273 0.94 2 19 0.96 71 5.0 1.8 2 23 279 301 278 301 0.94 3 19 0.96 71 5.0 1.8 2 23 340 362 339 362 0.94 4 19 0.96 71 5.0 1.8 2 23 401 423 400 423 0.94 5 19 0.96 71 5.0 1.8 2 23 462 484 461 484 0.94 6 19 0.96 71 5.0 1.8 2 23 523 545 522 545 0.94 7 19 0.96 71 5.0 1.8 2 23 584 606 583 606 0.94 8 19 0.96 71 5.0 1.8 2 23 645 667 644 667 0.94 9 19 0.96 71 5.0 1.8 2 23 706 728 705 728 0.94 10 19 0.96 71 5.0 1.8 2 23 767 789 766 789 0.94 11 19 0.96 71 5.0 1.8 2 23 828 850 827 850 0.94 12 19 0.55 41 5.8 1.5 1 19 854 872 854 877 0.90 13 19 2.2e-05 0.0016 19.6 1.2 3 23 882 903 881 903 0.98 14 19 0.012 0.92 10.9 1.4 2 23 907 929 906 929 0.95 15 19 0.006 0.45 11.9 0.5 2 22 943 963 942 967 0.93 16 19 0.0048 0.36 12.2 0.9 2 23 981 1003 980 1003 0.95 17 19 0.006 0.45 11.9 0.5 2 22 1017 1037 1016 1041 0.93 18 19 0.0002 0.015 16.5 0.2 2 23 1055 1077 1054 1077 0.95 19 19 0.011 0.78 11.2 1.6 2 21 1091 1110 1090 1115 0.93
Sequence Information
- Coding Sequence
- ATGAGTGCAGTGAAGAACGAAATGGACAATGTTTGTCGAGGGTGTTTAGCCATTGATCGGACTCTGAGGCCGTTGATTAAAAATGTCGATTTGTTCTTTATTTTCCTTGGAAATGAACTGTCTATATCTGATGAGTCAAAGTACTACAACATTCTTCTGTGCTGGGAATGCATCGCCCTCTTGAAGAAGGCCCAGGCCTTCCGCACCAGGGTCCAAACAGCTCACAGATATTTTGAGAGGATACTGAGCAGCCCAACGATCCGGGCGTTGACAAATCTAAGAGTCCACAAGAAAGATGACTACGACCTCATTCATATAGAGGACGAGAACGCACCCAAGATAAAACCTGAAGAGTTGAAGTTTGAAGTGTCACTGCAAGTTACAGCCGCTGACTGCCATATCAAGGAGGAAACTAATTATGACGAAGACGACCACTTTGACTATGAACCTGAGGACGAGTCAAAGCCCGACATCTCCAGTTTGGTCAAGAaggagaaaaagaagaagaaatacaAAGTCAGTCCCCTAGGCAAAAGGATTAAGACAAAAACTGTAAAATACAAGCCCGAAGACATCGACCAGTACATAGAGGAGCGAGAGTACACGCTTAAGGAGGTGCTAGCCATGCGGGACGAGCGAAAGCCGAGCCGCCTTCGCATCAGGAACATGGAGACCCGCTGCAACGTATACATCGCCAAGCTACTGGACTCGCAGAAAACCGACCTGGCCAAGAAAACCACGAGTGGTGGTTTGACATGTTCGGAGTGTGACGCTGTGGTATCGGACCAGGAGAGCATGAAGAGCCACTGGGAGCTGCACCCCGTGTCCCTGCTGCGCTGCCACTTCTGCGGGCTGCTCAGCCGCTCCAGGAAGTACCTCGCCTACCACGTGGAGTCGCGCCACTCCGTCATATACCGCTGCACCGTCTGCCACGTCGAGTACAGTGCTCGCGACACGTCGCTCCGTGGCGACTGCGCCGCGAGGAGCCCCCGGGAGCTGCGCCCCGTGTCCCTGCTGCGCTGCCACTTCTGCGGGCTGCTCAGCCGCTCCAGGAAGTACCTCGCCTACCACGTGGAGTCGCGCCACTCCGTCATATACCGCTGCACCGTCTGCCACGTCGAGTACAGTGCTCGCGACACGTCGCTCCGTGGCGACTGCGCCGCGAGGAGCCCCCGGGAGCTGCGCCCCGTGTCCCTGCTGCGCTGCCACTTCTGCGGGCTGCTCAGCCGCTCCAGGAAGTACCTCGCCTACCACGTGGAGTCGCGCCACTCCGTCATATACCGCTGCACCGTCTGCCACGTCGAGTACAGTGCTCGCGACACGTCGCTCCGTGGCGACTGCGCCGCGAGGAGCCCCCGGGAGCTGCGCCCCGTGTCCCTGCTGCGCTGCCACTTCTGCGGGCTGCTCAGCCGCTCCAGGAAGTACCTCGCCTACCACGTGGAGTCGCGCCACTCCGTCATATACCGCTGCACCGTCTGCCACGTCGAGTACAGTGCTCGCGACACGTCGCTCCGTGGCGACTGCGCCGCGAGGAGCCCCCGGGAGCTGCGCCCCGTGTCCCTGCTGCGCTGCCACTTCTGCGGGCTGCTCAGCCGCTCCAGGAAGTACCTCGCCTACCACGTGGAGTCGCGCCACTCCGTCATATACCGCTGCACCGTCTGCCACGTCGAGTACAGTGCTCGCGACACGTCGCTCCGTGGCGACTGCGCCGCGAGGAGCCCCCGGGAGCTGCGCCCCGTGTCCCTGCTGCGTTGCCACTTCTGCGGGCTGCTCAGCCGCTCCAGGAAGTACCTCGCCTACCACGTGGAGTCGCGCCACTCCGTCATATACCGCTGCACCGTCTGCCACGTCGAGTACAGTGCTCGCGACACGTCGCTCCGTGGCGACTGCGCCGCGAGGAGCCCCCGGGAGCTGCGCCCCGTGTCCCTGCTGCGCTGCCACTTCTGCGGGCTGCTCAGCCGCTCCAGGAAGTACCTCGCCTACCACGTGGAGTCGCGCCACTCCGTCATATACCGCTGCACCGTCTGCCACGTCGAGTACAGTGCTCGCGACACGTCGCTCCGTGGCGACTGCGCCGCGAGGAGCCCCCGGGAGCTGCGCCCCGTGTCCCTGCTGCGCTGCCACTTCTGCGGGCTGCTCAGCCGCTCCAGGAAGTACCTCGCCTACCACGTGGAGTCGCGCCACTCCGTCATATACCGCTGCACCGTCTGCCACGTCGAGTACAGTGCTCGCGACACGTCGCTCCGTGGCGACTGCGCCGCGAGGAGCCCCCGGGAGCTGCGCCCCGTGTCCCTGCTGCGCTGCCACTTCTGCGGGCTGCTCAGCCGCTCCAGGAAGTACCTCGCCTACCACGTGGAGTCGCGCCACTCCGTCATATACCGCTGCACCGTCTGCCACGTCGAGTACAGTGCTCGCGACACGTCGCTCCGTGGCGACTGCGCCGCGAGGAGCCCCCGGGAGCTGCGCCCCGTGTCCCTGCTGCGCTGCCACTTCTGCGGGCTGCTCAGCCGCTCCAGGAAGTACCTCGCCTACCACGTGGAGTCGCGCCACTCCGTCATATACCGCTGCACCGTCTGCCACGTCGAGTACAGGAACATCACGGAGTACTACCGGCACGACCGCGAGCTGCACAAGACGATGCTGTGCGACTACTGCGGCAAGAAGTTCAACCAGAAGAGCGGCATCGAGAGACACATCAAACGCAAACACTTGCCATTAAAATGCGACGTTTGCAAGCGTCCATACAAAAAGATGGCGTTCCTCAACAACCACATGGCGGTCTGTCACCCGGACGTCAAGTGGAGGAGCGTCAAACGTGAGCTCACCTACTGCGTAGAGTGCGACATGCACTTCGCGACCGAGTTCCTTTACAAGCGACACCTGCGTACGGCGGTCGTGCATAGACCCAGGCCGAAAATATCACTCAAACACTTGCCACTAAAATGCGACGTTTGCAAGCGTCCATACAAACAGATAGCGTTCCTCAACAACCACATGGCGGTCTGTCACCCGGACGTCAAGTGGCGGAGCGTCAAACGTGAGCTCACTTACTGCGTAGAGTGCGACATGCACTTCGCGACCGAGTTCCTTTACAAACGACACCTGCGTACGGCGGTCGTGCATAGACCGAGGCCGAAAATATCACGTTACCACTTACCGATACAGTGTCAGATATGTAAGAAAGTGTACAAACGGGAGGGAACCCTGGACAACCACATGGCGGTCCGCCACCCCGAGGTCAAATGGAAGGCGGTCAAGCGCGAGCTGACGTACTGCGTCGAGTGCGACATCCATTTCGCCACCGAGGATCTGTTCAAACGTCACTTGCGACATTACGTTAGGCACAGAACCAAGCCTCGCAAAGAGCAGTAA
- Protein Sequence
- MSAVKNEMDNVCRGCLAIDRTLRPLIKNVDLFFIFLGNELSISDESKYYNILLCWECIALLKKAQAFRTRVQTAHRYFERILSSPTIRALTNLRVHKKDDYDLIHIEDENAPKIKPEELKFEVSLQVTAADCHIKEETNYDEDDHFDYEPEDESKPDISSLVKKEKKKKKYKVSPLGKRIKTKTVKYKPEDIDQYIEEREYTLKEVLAMRDERKPSRLRIRNMETRCNVYIAKLLDSQKTDLAKKTTSGGLTCSECDAVVSDQESMKSHWELHPVSLLRCHFCGLLSRSRKYLAYHVESRHSVIYRCTVCHVEYSARDTSLRGDCAARSPRELRPVSLLRCHFCGLLSRSRKYLAYHVESRHSVIYRCTVCHVEYSARDTSLRGDCAARSPRELRPVSLLRCHFCGLLSRSRKYLAYHVESRHSVIYRCTVCHVEYSARDTSLRGDCAARSPRELRPVSLLRCHFCGLLSRSRKYLAYHVESRHSVIYRCTVCHVEYSARDTSLRGDCAARSPRELRPVSLLRCHFCGLLSRSRKYLAYHVESRHSVIYRCTVCHVEYSARDTSLRGDCAARSPRELRPVSLLRCHFCGLLSRSRKYLAYHVESRHSVIYRCTVCHVEYSARDTSLRGDCAARSPRELRPVSLLRCHFCGLLSRSRKYLAYHVESRHSVIYRCTVCHVEYSARDTSLRGDCAARSPRELRPVSLLRCHFCGLLSRSRKYLAYHVESRHSVIYRCTVCHVEYSARDTSLRGDCAARSPRELRPVSLLRCHFCGLLSRSRKYLAYHVESRHSVIYRCTVCHVEYSARDTSLRGDCAARSPRELRPVSLLRCHFCGLLSRSRKYLAYHVESRHSVIYRCTVCHVEYRNITEYYRHDRELHKTMLCDYCGKKFNQKSGIERHIKRKHLPLKCDVCKRPYKKMAFLNNHMAVCHPDVKWRSVKRELTYCVECDMHFATEFLYKRHLRTAVVHRPRPKISLKHLPLKCDVCKRPYKQIAFLNNHMAVCHPDVKWRSVKRELTYCVECDMHFATEFLYKRHLRTAVVHRPRPKISRYHLPIQCQICKKVYKREGTLDNHMAVRHPEVKWKAVKRELTYCVECDIHFATEDLFKRHLRHYVRHRTKPRKEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -