Carc003287.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coenonympha arcania
Gene Symbol
ZBTB41
Assembly
GCA_036785405.1
Location
CM072057.1:17356633-17358096[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00046 0.034 15.4 2.5 2 23 173 195 172 195 0.95
2 10 0.012 0.87 11.0 2.0 2 21 201 220 200 221 0.92
3 10 0.049 3.6 9.1 4.7 1 23 245 267 245 267 0.96
4 10 0.00011 0.0081 17.4 0.7 1 23 273 296 273 296 0.98
5 10 0.028 2.1 9.8 0.8 2 23 304 325 303 325 0.95
6 10 5.8 4.3e+02 2.5 2.1 2 23 329 349 328 350 0.70
7 10 0.04 3 9.3 3.4 1 23 355 378 355 378 0.96
8 10 4.6 3.4e+02 2.9 3.0 1 23 383 405 383 405 0.97
9 10 0.024 1.8 10.0 0.1 5 23 414 432 411 432 0.93
10 10 0.00022 0.016 16.5 3.2 1 23 438 461 438 461 0.97

Sequence Information

Coding Sequence
ATGAACAAAAAATCCGAAGTGTGTCGTGTGTGCTTGGATTCTGAGCAAAATGACTGTGTTCACTTGGCTGAGAAATACCAAGAGTTTGTCCTGTATGAATTCATCAACAACATCACCAACCTCAATATCAGGTTGAGCGACGGCTTTCCGGATAAGATATGTAAATTATGCTATTCACTGCTCAAAACTGCTATAGATTTCAAAGAGAAATGCGAAGCATCCGACGTAATATTacgctctcaaaccgtcaaagTAGAATTAACGCCAGTGGAAGTAAAACAGACCGCTGTAAAGAAGGAGAATGCTCGTAGTGCTATCAAAACTGAATACGAAGATGAGTATAACAGCGACATTGACTGTGATTGGCCGCTTTATTTAGAACCGGAACAATTAAAAGAGGAAGTGGACCATGAACAAGTGTCTGATTGTCCCAACCAATTGCCTGAGGTGTCATATAAAAAATCAGAATGTGTACCTGACTTAGGTAGACCAAGTAGAGCCATAGATCTGAAATTAATGTGCGATGACTGTGGTGGTTCTTTCAAATCAAAATGCAAGTTAAAAGTTCACTGGAAGAAGACACATATGCTCTCTTCATTGATGTGTCCATTATGCAAGCGCACTTTCAAAAGCTACCGAGCGTTTCATGtacacaaaaagaaaaaatcaaaggCATGTGCAATTGCGTCAGATAAAAATGTTTCCATTGAAGGTATTGGAAGAGCGAGGGTATTTTGTTGCAATATATGCAAATACAAGAGTCATAGACCTAAAGATTTGTATTCTCACATGGTTATCCACACAGGTGACAGACCTTATCAGTGCCAAATCTGTATGAAGACGTATACCCAACAGGCGTCGCTCCAAGGGCACCAGGAGACCTCACACGGGATATATGTCATTGAAATTACATGCCACATCTGTGGCAAGTATGTGAAAGGCCGTCGGAAGATCCTCAGGCACATTGGAAGCCATAAGAAAATTGAATGCAGTATATGCCAGAAGAAAGTAACAAAATTAGCGTATCCAAACCATTTAAGAAGGCACACCGGCGTAAAAAGTTTCACCTGTGAAATATGTGCATCCACATTTTATACTACAGCCGAACTGTGCAATCATAAACGATTTAAGCACAGTAAAAAGGAATTTCAATGCGATCAATGCGCTTTCAAAACACCAAAAGAGCACGTCCTTAGAAGTCATAAAAGTAAACACAGAGGTGATAGTGTGCCATGCATCATATGCGGTAGGTTTTTCCCAGCAGTAGAGAATATGCTCAAGCATCAAAGAGTTCATGCCATTGAGAAGAAATATAGCTGTCCGCATTGTGATTCAACGTTCGTCAAAAAAGACTCCATCAAGAGacatttaaaaaacaaacatcCAGAATTAGTGGAGAAAGAGACAAAACTTGTAGTTAAAACAGAGACCAATGGTTTAGCACAGACAGAAATACCTAGCTGA
Protein Sequence
MNKKSEVCRVCLDSEQNDCVHLAEKYQEFVLYEFINNITNLNIRLSDGFPDKICKLCYSLLKTAIDFKEKCEASDVILRSQTVKVELTPVEVKQTAVKKENARSAIKTEYEDEYNSDIDCDWPLYLEPEQLKEEVDHEQVSDCPNQLPEVSYKKSECVPDLGRPSRAIDLKLMCDDCGGSFKSKCKLKVHWKKTHMLSSLMCPLCKRTFKSYRAFHVHKKKKSKACAIASDKNVSIEGIGRARVFCCNICKYKSHRPKDLYSHMVIHTGDRPYQCQICMKTYTQQASLQGHQETSHGIYVIEITCHICGKYVKGRRKILRHIGSHKKIECSICQKKVTKLAYPNHLRRHTGVKSFTCEICASTFYTTAELCNHKRFKHSKKEFQCDQCAFKTPKEHVLRSHKSKHRGDSVPCIICGRFFPAVENMLKHQRVHAIEKKYSCPHCDSTFVKKDSIKRHLKNKHPELVEKETKLVVKTETNGLAQTEIPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00354520;
90% Identity
iTF_00354520;
80% Identity
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