Carc025764.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072081.1:7433665-7447902[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0013 0.098 14.0 1.0 1 23 333 355 333 355 0.98 2 13 7 5.2e+02 2.3 0.1 3 22 364 383 362 385 0.86 3 13 0.03 2.2 9.7 2.8 1 23 416 439 416 439 0.98 4 13 0.0038 0.28 12.5 1.1 1 23 443 466 443 466 0.96 5 13 7.9 5.8e+02 2.1 0.5 3 21 478 496 477 501 0.87 6 13 2.8 2.1e+02 3.5 0.8 3 23 538 559 536 559 0.93 7 13 0.12 8.8 7.8 4.5 2 23 573 595 572 595 0.93 8 13 1.3 1e+02 4.5 0.1 2 10 609 617 608 622 0.85 9 13 1.3 1e+02 4.5 0.1 2 10 694 702 693 707 0.85 10 13 0.00016 0.012 16.9 2.3 2 23 779 800 778 800 0.96 11 13 6.4e-06 0.00047 21.3 4.5 2 23 808 829 808 829 0.98 12 13 3.6e-05 0.0027 18.9 1.6 1 23 834 856 834 856 0.99 13 13 3.5e-05 0.0026 19.0 0.9 1 23 865 888 865 888 0.95
Sequence Information
- Coding Sequence
- ATGTTGTCTGTGCTTAGATCCGACTCAGATGAGCGACGCCGGGGCAAAGTCCGCGGTGCACACGGGGATGCGGACGTCGTAGTGTGGAGCGGTGTGCGAGGATCTGAGcTGGGTAGTGCAATGAATTTCTCGCCGATGTTCTGCAGCGAGTGCGCTCAGCGGCTGGTGAACTGCTGCAAGTTCAGAGACAAGAGTCTGAGAGCCTTCCAGGTGTTGTCGGAGCTGGTGCACAACAATGCAGAGTTGTCGCCGCAGACGCTGTCGTCGGTGGACCGCGCGCGCTGTCGGCTGACGTCCAGCCTCGCGAAGAAGACGTTTGAGCCCGACCACTGCGACCTGCACTTGACTTACGTGAAAAACGAGAAGATCGACGTAGCGCTAGAATTCGAGAGCGCGACCGTACCGAGGGACGTCAAATACGACCTGCAGCTAGTGAAAGACGACAGCAATACGGACGATGACGTCATTGTACACGACAACACGATAGACAGCACGAATAGAAGAAATCCCAGCATCGAATGCATTGACTACAATGACCTGGACATGGATTATGATGATGAAGACAGAAATGTGTGTAGTCTGAACAATCTTGGTGACGACAAAGTTGAGGGTAGTCTGAAAAAATCAAGTAGTACAAAAAAACGCAATCGGAGTTCAGTTGCAAAGAAAACGAAAACTGTCAAGTCAAATATGGGGGTATCTGATAAAAAAGGAGATGTTGCTAAGCGTAAGGTTAAATTGGAGGGTTCTCTCAAAGATTTAAGGGATGGTATTTTGACAAGGACTCGTAAAAAGGGGGCGGATGAGGGTATTACGACAAAAGAGGTCAGGCCGAAAAGGGTGAGGGCCAAGAAAATAGGACGCCCGCCGGGAAGGCCTAAAGTTCCAAACAACTGCAAGGAGTTAAGAGAGTTCAAGATATCTGAGCGGACTCCCGAGGAGCAACTCGCTGACTTGAGAGCGAGACAAGAGACGGACACGTACATACGCTCGCAGTACAAATGCACCGATTGTTACAAGGGCTTCCAAGACGAAAACGCGTACAACACACACTTGGAGAGACACACCGATAAATACGGTCTCCTTGCGTGCCCCATTTGCCGTATCCGCGTCAAACTCGGCAAGGACCTCAGCAAACACGTGGGGAACTCGCACAAGACCCTGTACCACTGCACCAAGTGCACGTTCGTCACGCACCAAAAAAATTCAGCGCTATGTCACTCGCGATGGCACGACGGCAAAAAGTACAAATGTCAACACTGCGAGGACGAGTTCATCAAGCCCACATCCTACTTCAACCACCTCCGTATAAAGCATCCTTCAGACCACGTGTGCAAGCTGTGTGGCTACTCCTTCATCGGTGTGAAGGGCCTCATGTACCACATGAGCAGGAAACACTACTCCGACAGCAAGCAGTTGTCGGGGCCTCTGTGTTCGGAGTGCAACATACGCTTCGCGTGCGACGCCGCCTACGAGACGCACATGAAAGTGTCCCCCAAACACGCGGCGCCCGGAAGCCGCAAAACAAACGACCCGACGCCGCCGCGGAAATACAATCCTATTAGAGAGAAGGCTAGAAAGAGAAACCAAGACAAGGCCGCTTCGATCGACTGCGAGCTGTGTGGCATCATGCTGGAGAGCCGCCGCAAGTACTACTGGCACTTCCGCGCGTGCCAcccgcacagcacgcgcaccaAGTACCCCAGCCCCATGCTCATGTGCGACCAGTGCGGGAAAGCGTTCCACAGCCGCCGCAAGTACTACTGGCACTTCCGCGCGTGCCAcccgcacagcacgcgcaccaAGTACCCCAGCCCCATGCTCATGTGCGACCAGTGCGGGAAAGCGTTCCACGTGAGTATACATCGTGCCGGAGAGCCGCCGCAAGTACTACTGGCACTTCCGCGCGTGCCAcccgcacagcacgcgcaccaAGTACCCCAGCCCCATGCTCATGTGCGACCAGTGCGGGAAAGCGTTCCACTATACATCGTGCCGGAGAGCCGCCGCAAGTACTACTGGCACTTCCGCGCGTGCCAcccgcacagcacgcgcaccaAGTACCCCAGCCCCATGCTCATGTGCGACCAGTGCGGGAAAGCGTTCCACGTGAGTATACATCGTGCCGGAGAGCCGCCGCAAGTACTACTGGCACTTCCGCGCGTGCCAcccgcacagcacgcgcaccaAGTACCCCAGCCCCATGCTCATGTGCGACCAGTGCGGGAAAGCGTTCCACTATACATCGTGCCGGAGAGCCGCCGCAAGTACTACTGGCACTTCCGCGCGTGCCAcccgcacagcacgcgcaccaAGTACCCCAGCCCCATGCTCATGTGCGACCAGTGCGGGAAAGCGTTCCACAGCAAGTGCAGCCTCGCCGACCACATGGCAACGCACAGCGGGGAGAGCAAGCCGGAGCAGTGCCACATATGCAGCAAGATGTTCCGCTACAAGGTGACGCTCAAGCGGCACATGCGCCTGCACAGCAACTCCAGCTAccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggagacCCATCTCAACCTTCACGAAAGGAAGCTTTACGATTGTAAGGAATGCGGCAAAACGTTCACGTCGGTTGTGGCGATGAAGAACCACATGCTGCACGTGCACTTCAAGGTGCCCTACCCCAAGAGAGACCGCCCCTCGAGGCCGCGCGCGCACGCCTCGCACGCGCACACCGCAGACTACAGGCTGTAG
- Protein Sequence
- MLSVLRSDSDERRRGKVRGAHGDADVVVWSGVRGSELGSAMNFSPMFCSECAQRLVNCCKFRDKSLRAFQVLSELVHNNAELSPQTLSSVDRARCRLTSSLAKKTFEPDHCDLHLTYVKNEKIDVALEFESATVPRDVKYDLQLVKDDSNTDDDVIVHDNTIDSTNRRNPSIECIDYNDLDMDYDDEDRNVCSLNNLGDDKVEGSLKKSSSTKKRNRSSVAKKTKTVKSNMGVSDKKGDVAKRKVKLEGSLKDLRDGILTRTRKKGADEGITTKEVRPKRVRAKKIGRPPGRPKVPNNCKELREFKISERTPEEQLADLRARQETDTYIRSQYKCTDCYKGFQDENAYNTHLERHTDKYGLLACPICRIRVKLGKDLSKHVGNSHKTLYHCTKCTFVTHQKNSALCHSRWHDGKKYKCQHCEDEFIKPTSYFNHLRIKHPSDHVCKLCGYSFIGVKGLMYHMSRKHYSDSKQLSGPLCSECNIRFACDAAYETHMKVSPKHAAPGSRKTNDPTPPRKYNPIREKARKRNQDKAASIDCELCGIMLESRRKYYWHFRACHPHSTRTKYPSPMLMCDQCGKAFHSRRKYYWHFRACHPHSTRTKYPSPMLMCDQCGKAFHVSIHRAGEPPQVLLALPRVPPAQHAHQVPQPHAHVRPVRESVPLYIVPESRRKYYWHFRACHPHSTRTKYPSPMLMCDQCGKAFHVSIHRAGEPPQVLLALPRVPPAQHAHQVPQPHAHVRPVRESVPLYIVPESRRKYYWHFRACHPHSTRTKYPSPMLMCDQCGKAFHSKCSLADHMATHSGESKPEQCHICSKMFRYKVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMETHLNLHERKLYDCKECGKTFTSVVAMKNHMLHVHFKVPYPKRDRPSRPRAHASHAHTADYRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -