Carc025802.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072081.1:7779241-7797410[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 1.1 83 4.8 5.7 1 23 190 212 190 212 0.98 2 24 0.38 29 6.2 3.2 1 23 219 242 219 242 0.95 3 24 4.8 3.6e+02 2.8 2.8 1 23 246 268 246 268 0.96 4 24 8.1e-06 0.0006 21.0 2.0 1 23 273 296 273 296 0.97 5 24 0.11 8.2 7.9 0.6 1 23 300 323 300 323 0.95 6 24 0.11 8.2 7.9 0.6 1 23 330 353 330 353 0.95 7 24 0.11 8.2 7.9 0.6 1 23 383 406 383 406 0.95 8 24 0.11 8.2 7.9 0.6 1 23 413 436 413 436 0.95 9 24 0.11 8.2 7.9 0.6 1 23 466 489 466 489 0.95 10 24 0.11 8.2 7.9 0.6 1 23 496 519 496 519 0.95 11 24 0.11 8.2 7.9 0.6 1 23 549 572 549 572 0.95 12 24 0.11 8.2 7.9 0.6 1 23 579 602 579 602 0.95 13 24 0.11 8.2 7.9 0.6 1 23 632 655 632 655 0.95 14 24 0.00039 0.029 15.7 0.2 2 22 667 687 667 691 0.94 15 24 0.7 52 5.4 2.5 3 23 734 755 732 755 0.96 16 24 0.00013 0.0095 17.2 0.7 1 23 767 789 767 789 0.98 17 24 0.019 1.4 10.4 0.8 2 23 794 815 793 816 0.93 18 24 0.0099 0.73 11.2 4.4 1 22 830 851 830 855 0.94 19 24 0.011 0.8 11.1 3.8 1 21 949 969 949 970 0.96 20 24 0.0099 0.73 11.2 4.4 1 22 981 1002 981 1006 0.94 21 24 0.011 0.8 11.1 3.8 1 21 1100 1120 1100 1121 0.96 22 24 0.0099 0.73 11.2 4.4 1 22 1132 1153 1132 1157 0.94 23 24 0.0099 0.73 11.2 4.4 1 22 1251 1272 1251 1276 0.94 24 24 0.0099 0.73 11.2 4.4 1 22 1370 1391 1370 1395 0.94
Sequence Information
- Coding Sequence
- ATGGAATACGAGAGTTTAACTGGAATTTTGCTGGCAGGAGCACTGTACTTCACTCCGATGTTCTGCAGCGAGTGCGCTCAGCGTCTGATCACCTGCTGCAAGTTCAGAGACAAGAGTCTGAGAGCCTTCCAGCTGCTGGCGGAGCTGGTTCAGAAGCATGCAGTGTTGTCGCCGCAGACGCTGTCGTCGGTGGACCGCGCGCGCTGTCGGCTGACGTCCAGCGTCGTGAAGAAGACGTTTGAGCCCGACCACTGCGATCTGTATGTGACGGAGAACCCGAAAAGTATAGAGAAGATTAACGTGAAAACTgaagaaattaatttaaatgaagaGGTTTTTAATAAACAGATAAAATGCGAGACAAATCGTGATGATGCTTTCGTATTTCCGAAAGATGGCGTTAAAACGGAAATAGAATTCATCAGtgataaagttaaaaataatgctGACGCTGTTCTAAAAGAATGCGAAGAACTGAAAGGATTCAACATATCCGAAAGGAGTTCAGAAGAGCAGTTAGCTGACTTGAGAGTGAAACAAGAGACGGCGAAATACAAGAGACTGCGCCACAAGTGCACAGACTGCTGCAAGGGGTTCCAGGACGAGAACACTTACAACACTCACATGGACCGGCACACCGATAAATTCGGCGCATTCGCGTGTCCGATCTGTCACATACGTGTCAAGAAGCTAGCACACGTGACACACCACGTCACCAAGAGCCACAAGTTCCTATTTCATTGCACCGAGTGTGCTTTCTCAACTAACAGCAAaGAGACAGCAACGAAGCACTCTAAATGGCACAACGGCAAGACCTACAACTGTCCACACTGCGGAAAAGTGTTCGCGAGGCACACCACGCTGTACAGCCACGTGCGCATAGCTCACCCGTCGCAGCACGCGTGCGCGCTgtgcgggttctccttcatcaGCGGCAAGGGGCTCGCGCTGCACACGAAGAAGAAACACTACTCCCACGTCCAACAGCACGCGTGCGCGCTgtgcgggttctccttcatcaGCGGCAAGGGGCTCGCGCTGCACACGAAGAAGAAACACTACTCCCACGTCCAACAGGTTAGTGTTAAATATTCCTGGAGGCACACCACGCTGTACAGCCACGTGCGCATAGCTCACCCGTCGCAGCACGCGTGCGCGCTgtgcgggttctccttcatcaGCGGCAAGGGGCTCGCGCTGCACACGAAGAAGAAACACTACTCCCACGTCCAACAGCACGCGTGCGCGCTgtgcgggttctccttcatcaGCGGCAAGGGGCTCGCGCTGCACACGAAGAAGAAACACTACTCCCACGTCCAACAGGTTAGTGTTAAATATTCCTGGAGGCACACCACGCTGTACAGCCACGTGCGCATAGCTCACCCGTCGCAGCACGCGTGCGCGCTgtgcgggttctccttcatcaGCGGCAAGGGGCTCGCGCTGCACACGAAGAAGAAACACTACTCCCACGTCCAACAGCACGCGTGCGCGCTgtgcgggttctccttcatcaGCGGCAAGGGGCTCGCGCTGCACACGAAGAAGAAACACTACTCCCACGTCCAACAGGTTAGTGTTAAATATTCCTGGAGGCACACCACGCTGTACAGCCACGTGCGCATAGCTCACCCGTCGCAGCACGCGTGCGCGCTgtgcgggttctccttcatcaGCGGCAAGGGGCTCGCGCTGCACACGAAGAAGAAACACTACTCCCACGTCCAACAGCACGCGTGCGCGCTgtgcgggttctccttcatcaGCGGCAAGGGGCTCGCGCTGCACACGAAGAAGAAACACTACTCCCACGTCCAACAGGTTAGTGTTAAATATTCCTGGAGGCACACCACGCTGTACAGCCACGTGCGCATAGCTCACCCGTCGCAGCACGCGTGCGCGCTgtgcgggttctccttcatcaGCGGCAAGGGGCTCGCGCTGCACACGAAGAAGAAACACTACTCCCACGTCCAACAGGAGTTATCCGGCCCCCAATGTGAAGATTGCAACATCAGCTTCGCGCACCAGGCTGCCTATGAGATACATATGAGGGTTTCTCCCAAACACGCGGCGCCTGGTTCCCGGAAAACAAACGAGTACGCGACATACCACGGCATCAACCGTCCCAAACTGAAACCAGGCGAGAAGAGGACAGCCTCAGAGTCGGACAAAGACAAAAAACGTATAATCGACTGCGAACTGTGCGGGGTCAAATGTCACAGCAGCGCGCAGTACTGGTGGCACTTCAGGAAGAAGCACCCCGACAGTGTGAGCGCGCAGTCGCGGGCCGCCTTCGTGTGCGAACAGTGCGGGAAGGTGCTTCAGAGCAAGCATTACCTTCTTGAACACATCCGCGTGCACAACGGCGAGACGCGGTGCGGCGAGTGCGGGAAGATGTTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCACAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGTCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGTCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGTCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGTCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGTCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGTCAGTGCGACACGATTCTTGGCTCGGCCGCCGTCTCGAGCGGTCGCGTCCGGAGAATACGCAGAGCTGCTATCGGTGTACGCGCCCCGCCTCCCCGCGCCCCGCCGACGCGTGTTCGTCGCGGCTCGAGGTGA
- Protein Sequence
- MEYESLTGILLAGALYFTPMFCSECAQRLITCCKFRDKSLRAFQLLAELVQKHAVLSPQTLSSVDRARCRLTSSVVKKTFEPDHCDLYVTENPKSIEKINVKTEEINLNEEVFNKQIKCETNRDDAFVFPKDGVKTEIEFISDKVKNNADAVLKECEELKGFNISERSSEEQLADLRVKQETAKYKRLRHKCTDCCKGFQDENTYNTHMDRHTDKFGAFACPICHIRVKKLAHVTHHVTKSHKFLFHCTECAFSTNSKETATKHSKWHNGKTYNCPHCGKVFARHTTLYSHVRIAHPSQHACALCGFSFISGKGLALHTKKKHYSHVQQHACALCGFSFISGKGLALHTKKKHYSHVQQVSVKYSWRHTTLYSHVRIAHPSQHACALCGFSFISGKGLALHTKKKHYSHVQQHACALCGFSFISGKGLALHTKKKHYSHVQQVSVKYSWRHTTLYSHVRIAHPSQHACALCGFSFISGKGLALHTKKKHYSHVQQHACALCGFSFISGKGLALHTKKKHYSHVQQVSVKYSWRHTTLYSHVRIAHPSQHACALCGFSFISGKGLALHTKKKHYSHVQQHACALCGFSFISGKGLALHTKKKHYSHVQQVSVKYSWRHTTLYSHVRIAHPSQHACALCGFSFISGKGLALHTKKKHYSHVQQELSGPQCEDCNISFAHQAAYEIHMRVSPKHAAPGSRKTNEYATYHGINRPKLKPGEKRTASESDKDKKRIIDCELCGVKCHSSAQYWWHFRKKHPDSVSAQSRAAFVCEQCGKVLQSKHYLLEHIRVHNGETRCGECGKMFQTVLGLRNHADRHHSQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQVSATHTRVRRAAPDRAGSEEPRGQTPLAGRAAAERRRAPTPVLPLRVPHQQQSQPDQTHAVRHTRACGELLQTVLGLRNHADRHHSQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQVSATHTRVRRAAPDRAGSEEPRGQTPLAGRAAAERRRAPTPVLPLRVPHQQQSQPDQTHAVRHTRACGELLQTVLGLRNHADRHHSQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQVSATHTRVRRAAPDRAGSEEPRGQTPLAGRAAAERRRAPTPVLPLRVPHQQQSQPDQTHAVRHTRACGELLQTVLGLRNHADRHHSQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQVSATHTRVRRAAPDRAGSEEPRGQTPLAGRAAAERRRAPTPVLPLRVPHQQQSQPDQTHAVRHTRACGELLQTVLGLRNHADRHHSQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQVSATHTRVRRAAPDRAGSEEPRGQTPLAGRAAAERRRAPTPVLPLRVPHQQQSQPDQTHAGQCDTILGSAAVSSGRVRRIRRAAIGVRAPPPRAPPTRVRRGSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -