Carc025804.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072081.1:7800107-7808811[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0092 0.68 11.3 4.4 1 22 54 75 54 79 0.94 2 17 0.01 0.74 11.2 3.8 1 21 173 193 173 194 0.96 3 17 0.0092 0.68 11.3 4.4 1 22 205 226 205 230 0.94 4 17 0.01 0.74 11.2 3.8 1 21 324 344 324 345 0.96 5 17 0.0092 0.68 11.3 4.4 1 22 356 377 356 381 0.94 6 17 0.0092 0.68 11.3 4.4 1 22 475 496 475 500 0.94 7 17 0.01 0.74 11.2 3.8 1 21 594 614 594 615 0.96 8 17 0.0092 0.68 11.3 4.4 1 22 626 647 626 651 0.94 9 17 0.01 0.74 11.2 3.8 1 21 745 765 745 766 0.96 10 17 0.0092 0.68 11.3 4.4 1 22 777 798 777 802 0.94 11 17 0.01 0.74 11.2 3.8 1 21 896 916 896 917 0.96 12 17 0.0092 0.68 11.3 4.4 1 22 928 949 928 953 0.94 13 17 0.01 0.74 11.2 3.8 1 21 1047 1067 1047 1068 0.96 14 17 0.0092 0.68 11.3 4.4 1 22 1079 1100 1079 1104 0.94 15 17 0.0092 0.68 11.3 4.4 1 22 1198 1219 1198 1223 0.94 16 17 0.0055 0.41 12.0 7.0 1 23 1317 1339 1317 1339 0.98 17 17 0.025 1.9 10.0 3.7 1 23 1348 1371 1348 1371 0.93
Sequence Information
- Coding Sequence
- atgcgtaaacgcatttcccagcgacaaaaaaaaaaaaaaaggtcagtgcgacacacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGTCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGTCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGTCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGTCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGTCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGTCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGTCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGTCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGGTCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGTGCGACACacacgcgcgtgcggcgagctgCTCCAGACCGTGCTGGGTCTGAGGAACCACGCGGACAGACACCACTCGCAGGGCGCGCCGCGGCGGAGCGACGACGGGCCCCGACACCAGTGCTGCCACTGCGCGTACCGCACCAGCAACAGAGCCAACCTGACCAGACACATGCAGATCCACTTGGCACCGGACTCGCGGGAGTTGCACCGCTGTGAAGTTTGTGACAAAACCTTGAAGAGCAAGGACGCGATGTCGCATCACGTCCTCCACGTGCATCAGAAGGTGCCGTGGCCGCGGCGGATACGTAAAGCACGACCGAGAGAAGTGTCTTGTCTCTTCTGTGTCCAGTATTCAccgacctag
- Protein Sequence
- MRKRISQRQKKKKRSVRHTRACGELLQTVLGLRNHADRHHSQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQVSATHTRVRRAAPDRAGSEEPRGQTPLAGRAAAERRRAPTPVLPLRVPHQQQSQPDQTHAVRHTRACGELLQTVLGLRNHADRHHSQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQVSATHTRVRRAAPDRAGSEEPRGQTPLAGRAAAERRRAPTPVLPLRVPHQQQSQPDQTHAVRHTRACGELLQTVLGLRNHADRHHSQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQVSATHTRVRRAAPDRAGSEEPRGQTPLAGRAAAERRRAPTPVLPLRVPHQQQSQPDQTHAVRHTRACGELLQTVLGLRNHADRHHSQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQVSATHTRVRRAAPDRAGSEEPRGQTPLAGRAAAERRRAPTPVLPLRVPHQQQSQPDQTHAVRHTRACGELLQTVLGLRNHADRHHSQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQVSATHTRVRRAAPDRAGSEEPRGQTPLAGRAAAERRRAPTPVLPLRVPHQQQSQPDQTHAVRHTRACGELLQTVLGLRNHADRHHSQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQVSATHTRVRRAAPDRAGSEEPRGQTPLAGRAAAERRRAPTPVLPLRVPHQQQSQPDQTHAVRHTRACGELLQTVLGLRNHADRHHSQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQVSATHTRVRRAAPDRAGSEEPRGQTPLAGRAAAERRRAPTPVLPLRVPHQQQSQPDQTHAVRHTRACGELLQTVLGLRNHADRHHSQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQVSATHTRVRRAAPDRAGSEEPRGQTPLAGRAAAERRRAPTPVLPLRVPHQQQSQPDQTHAVRHTRACGELLQTVLGLRNHADRHHSQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQVSATHTRVRRAAPDRAGSEEPRGQTPLAGRAAAERRRAPTPVLPLRVPHQQQSQPDQTHAVRHTRACGELLQTVLGLRNHADRHHSQGAPRRSDDGPRHQCCHCAYRTSNRANLTRHMQIHLAPDSRELHRCEVCDKTLKSKDAMSHHVLHVHQKVPWPRRIRKARPREVSCLFCVQYSPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -