Carc025805.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072081.1:7812155-7844751[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.0014 0.11 13.9 1.0 1 23 749 771 749 771 0.98 2 30 0.022 1.6 10.2 0.7 1 23 834 857 834 857 0.96 3 30 0.022 1.6 10.2 0.7 1 23 880 903 880 903 0.96 4 30 0.022 1.6 10.2 0.7 1 23 926 949 926 949 0.96 5 30 0.022 1.6 10.2 0.7 1 23 972 995 972 995 0.96 6 30 0.022 1.6 10.2 0.7 1 23 1018 1041 1018 1041 0.96 7 30 0.022 1.6 10.2 0.7 1 23 1064 1087 1064 1087 0.96 8 30 0.00075 0.056 14.8 0.7 2 21 1099 1118 1099 1123 0.93 9 30 6.3 4.7e+02 2.4 0.9 3 23 1162 1183 1160 1183 0.94 10 30 0.78 58 5.3 0.2 1 10 1201 1210 1201 1214 0.90 11 30 0.66 49 5.5 0.3 1 10 1263 1272 1263 1277 0.87 12 30 0.66 49 5.5 0.3 1 10 1337 1346 1337 1351 0.87 13 30 0.57 42 5.7 0.1 1 11 1411 1421 1411 1424 0.89 14 30 0.66 49 5.5 0.3 1 10 1473 1482 1473 1487 0.87 15 30 0.66 49 5.5 0.3 1 10 1547 1556 1547 1561 0.87 16 30 0.66 49 5.5 0.3 1 10 1621 1630 1621 1635 0.87 17 30 0.66 49 5.5 0.3 1 10 1695 1704 1695 1709 0.87 18 30 0.66 49 5.5 0.3 1 10 1769 1778 1769 1783 0.87 19 30 0.66 49 5.5 0.3 1 10 1843 1852 1843 1857 0.87 20 30 0.78 58 5.3 0.2 1 10 1917 1926 1917 1930 0.90 21 30 0.00028 0.02 16.1 1.3 1 23 1979 2001 1979 2001 0.96 22 30 0.00031 0.023 16.0 1.0 2 23 2008 2030 2008 2030 0.96 23 30 0.038 2.8 9.4 0.2 1 21 2043 2063 2043 2064 0.95 24 30 0.038 2.8 9.4 0.2 1 21 2072 2092 2072 2093 0.95 25 30 0.038 2.8 9.4 0.2 1 21 2101 2121 2101 2122 0.95 26 30 0.038 2.8 9.4 0.2 1 21 2130 2150 2130 2151 0.95 27 30 0.038 2.8 9.4 0.2 1 21 2159 2179 2159 2180 0.95 28 30 0.038 2.8 9.4 0.2 1 21 2188 2208 2188 2209 0.95 29 30 2.7 2e+02 3.6 0.1 12 23 2228 2239 2224 2239 0.89 30 30 0.004 0.3 12.5 3.5 1 23 2248 2271 2248 2271 0.93
Sequence Information
- Coding Sequence
- ATGGTTCTGGGAGATTTTAATGCTCACCACACAAACCTGTCTCTTTGCTCTCCATCCTTAGCCTCTTTATCTTCTTGGAATATCCTCCCAAGCACATATGGCAGCGATCATTACCCAATCGTCCTATCTATTGCTCAGAGATCCATTCCAACTTCTAACCCTAGCCCTCTCCTGAAGCATAAAACTAGCAAGGCCAACTGGTCTGCTTTTGCAGCTTCAGCTGACTGTTTATCAGATACTCTTCCAGAAACGATTGAGGATGATAATATTCCGACATATTATGACAATTTTGTTAGAATACTGAAATTTTCAGCTGACCTTCACATTCCTCTAAAAAAGGCTAAACGAGATTTTCTATTATCCCCCCCGTGGTGGGATGAGGAATGCACCAACATGGTAAACAAGCGCAAAGAGGCAGAACGTGTCTATAAGATGTCTATGTCTCaagaaaattttttaaaatatcaacgCACTGATGCCAAATGTAAAAGACTTTTGTCCAAAAAGAAACGGAACGGTTGGACCAGATTTTGTGAATCCCTGGATCCTCGCTCCCCGATTTCCATTGTTTGGGATAAGATTAAAAAATTCCGCCGCTCTGTATGCGCTAACGACCCTCCTTCTAATGATGCATCAATTTGGCTAGACTCCTTTGCAGACAAACTGGCTCCTCCTTCTGTCCCTCATGAAAACTGCCTCCCTTCTATCTCTCTTCTTCCCAGTTCAGATCCAATGGATGCCCCATTCTCCATATCCGAGTTACAATGTGTTCTATCTGATCTAAAAGACTCCTCCCCGGGAGAAGATGGGATCCCCTACTCTTTTTTAACTAACCTCAATCCTAAAGCCAAACTTGCTTACCTTAAAATGATAAACAAACTTTTTGAATTAGGTGTTGTTCCATCATCTTGGAAGTCTCAAATTATAATTCCCATTTTAAAAGCTGGCAAGGACCCCTTAGACCCTAGTTCTTATCGCCCTATAGCCCTCTCCTCAACCTTAGCCAAAACTATGGAGCACTTGATTAAAAACCGCTTAGAATGGGCAATGGAAAGCAGAGGTTTACTTGCTAAATCACAGTTTGGTTTTAGAAAAGGCCTGGGCACTATGGACAGCCTTGGTATCTTCACGACTGACATTCGCACTGCGCTAGCCAGAGATGTTCACAGTAAACTGTTGCAACGGAGCAAATATAATTTAAGTGTGGAATATGAACATCTAACTGGAATACCGCCGGTTGGTTTCAACTTCACGCCGATGTTCTGCAGCGAGTGCGCTCAGCGGCTGGTGAACTCAGCAAAGCTCAGAGACAAGAGTCTGAGGGCCTTAAAGCTGCTGGCGAAGCTGCATCTCAACAATCCAGAATTGTCGCCGGAGACGCTGTCGTCGGTGGACCGCGCGCGCTGTCAGCTGACTTCCAGCGTCGTGAAGAAGACGTTTGAACCCAACCACTGCGACCTGCACTTGACTGACGACAGCATTGTAGACAAGATTTACGTGAAGAATGAGGAAGACGAGCTGCCTCTTGAAATTAAAACGGAAACTCCAAAAATTACTGAGGATATTGATGCTTTAGAATTTTTGGATGTTGACACTGATAATAGAGTAGAAGGTATTGATGATTCTTCAAATGATGAAGACAATATAAGAGATCTAAAACAAAGGAAAACCGCGCTTGAGATTCTCATTGAAGCACCAGTTATCAATGATCATGATAGATTAAGGAATGATGATATTGATGGTTTAAATGATGATATATCCATAGATAATGACATCCCGAATGATACAAACAGTTTGAATGAAATTGATACACATGCGAAACTtttaaacacaaaaaatatcaaAGATGTCAGTAACTTAAATACTAAGAATAATAAgtctaaaaacaataaagatgttttcaataagaaaaataaagtaaGCAAACTTAAACTTGTAAGTGAAGCTAAGTGCAAGTTAAAAAGTAAACTTAAGAAACCCAAAGATAAACGTAAAGTAAAAGATATAGAAAGTTTAGAATGTAAAGACAGTTGTACTGAAAAAATCTCTAGTGAAGAAAATGAAGTGGTGACAGAAGTTAAGAAGAAAAGAGGTCGACCGAAGAAAATAAGACCACCTCCCGAACCAAAAGTGCCAAAAGACTACGAAGAATTGAAggagtttaaaataattgaacgtACTCCCGAGGAGCAACTCGCTGACTTGAGAGCGAGACAAGAGACTGACACCTATAAACGCTCGCTGTTTCAATGCACTGATTGTTTTAAAGGCTTCCAAGACGAAAACGCGTACAACACACACATGGAAAGACACACAGACAAATACGGACTCCACGCGTGCCCCGTGTGTCGCGTGCGTGTCAAACGTCGCTTGCGCGTGAACCACCACGTCATAAACATACACAAGTTCCTGTTCCACTGCAGGAACTGCACTTTCGTTACCAACCACAATAAACGCACGTCCTACTTCAACCACCTGCGCACGAAGCACCCCTCGGACCACGTGTGCACGCTgtgcgggttctccttcatcGGCGAGCGGGGGCTCATGTCGCACGTCAACAAGAAGCACTACGCCGACGACAAGCAGGTCAGTAGGTCCTACTTCAACCACCTGCGCACGAAGCACCCCTCGGACCACGTGTGCACGCTgtgcgggttctccttcatcGGCGAGCGGGGGCTCATGTCGCACGTCAACAAGAAGCACTACGCCGACGACAAGCAGGTCAGTAGGTCCTACTTCAACCACCTGCGCACGAAGCACCCCTCGGACCACGTGTGCACGCTgtgcgggttctccttcatcGGCGAGCGGGGGCTCATGTCGCACGTCAACAAGAAGCACTACGCCGACGACAAGCAGGTCAGTAGGTCCTACTTCAACCACCTGCGCACGAAGCACCCCTCGGACCACGTGTGCACGCTgtgcgggttctccttcatcGGCGAGCGGGGGCTCATGTCGCACGTCAACAAGAAGCACTACGCCGACGACAAGCAGGTCAGTAGGTCCTACTTCAACCACCTGCGCACGAAGCACCCCTCGGACCACGTGTGCACGCTgtgcgggttctccttcatcGGCGAGCGGGGGCTCATGTCGCACGTCAACAAGAAGCACTACGCCGACGACAAGCAGGTCAGTAGGTCCTACTTCAACCACCTGCGCACGAAGCACCCCTCGGACCACGTGTGCACGCTgtgcgggttctccttcatcGGCGAGCGGGGGCTCATGTCGCACGTCAACAAGAAGCACTACGCCGACGACAAGCAGGAGCTGTCGGGCCCTCAGTGCAAGGAGTGCGACATCTGCTTCGCGAACCAGTCCGCGTACCAGATACACCTGAACGTGTCCCCCAAACACGCGGCGCCCGATGAGTTGCGAACGAACGACGCGCATAAAGTGAGGTCGTTTCTACCGAATGAGAAGAGACGGGAGCGAGGACAGAGGGGGGGCGACAAGAAATGTATCATCGACTGCGAACTGTGCGGCGCGGTGTTGGAGAGCCGCCGCAAGTACTACTGGCACTTCCGCAACTGCCACCCGCACGCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCCAGGTGAGGGCAGGCGACGAGACGCAAGTACGAGTCGCAAGTGAGGGCAGGCGACGAGACGCAAGTACGAGTCGCAAGTACTACTGGCACTTCCGCAACTGCCACCCGCACGCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCCAGGTGAGGGCAGGCGACGAGACGCAAGTACGAGTCGCAAGTACTACTGGCACTTCCGCAACTGCCACCCGCACGCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCCAGGTGAGGGCAGGCGACGAAACGCAAGTACGAGTCGCAAGTACTACTGGCACTTCCGCAACTGCCACCCGCACGCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCGAGGTGAGGGCAGGCGACGAGACGCAAGTACGAGTCGCAAGTGAGGGCAGGCGACGAGACGCAAGTACGAGTCGCAAGTACTACTGGCACTTCCGCAACTGCCACCCGCACGCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCCAGGTGAGGGCAGGCGACGAGACGCAAGTACGAGTCGCAAGTACTACTGGCACTTCCGCAACTGCCACCCGCACGCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCCAGGTGAGGGCAGGCGACGAGACGCAAGTACGAGTCGCAAGTACTACTGGCACTTCCGCAACTGCCACCCGCACGCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCCAGGTGAGGGCAGGCGACGAGACGCAAGTACGAGTCGCAAGTACCACTGGCACTTCCGCAACTGCCACCCGCACGCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCCAGGTGAGGGCAGGCGACGAGACGCAAGTACGAGTCGCAAGTACTACTGGCACTTCCGCAACTGCCACCCGCACGCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCCAGGTGAGGGCAGGCGACGAGACGCAAGTACGAGTCGCAAGTACTACTGGCACTTCCGCAACTGCCACCCGCACGCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCCAGGTGAGGGCAGGCGACGAGACGCAAGTACGAGTCGCAAGTACTACTGGCACTTCCGCAACTGCCACCCGCACGCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCCAGGTGAGGGCAGGCGACGAGACGCAAGTACGAGTCGCAAGTGAGGGCAGGCGACGAGACGCAAGTACGAGTCGCAAGTACTACTGGCACTTCCGCAACTGCCACCCGCACGCCAGCCCCGCCAAGATGCCGCGCGGCCCCAAGCCACGCGCGCGGTTCATGTGCGAGCAGTGCGGGAAGGTGTTCCAGAGCAAGTTCCACCTCGGCGAGCACATGTCGGCGCACAGCGGCGAGACGCCGGAGCAGTGCGACTTGTGCAGCAAGCGCTTCCGCTCCGCCGCCAGCCTGCGGAAGCACGTGGAGCGCACGCACCTGCGGCGGTGCACGGAGCGGCGGCCGGGCGACGCGTACCGgtgcgcgcactgcgcctacCGCACCGGGGACAAGGGCAACCTGAACAGGCACGTGCAGGCACGTGCAGGTGAGTGCGACGCGTACCGgtgcgcgcactgcgcctacCGCACCGGGGACAAGGGCAACCTGAACAGGCACGTGCAGGCACGTGCAGGTGAGTGCGACGCGTACCGgtgcgcgcactgcgcctacCGCACCGGGGACAAGGGCAACCTGAACAGGCACGTGCAGGCACGTGCAGGTGAGTGCGACGCGTACCGgtgcgcgcactgcgcctacCGCACCGGGGACAAGGGCAACCTGAACAGGCACGTGCAGGCACGTGCAGGTGAGTGCGACGCGTACCGgtgcgcgcactgcgcctacCGCACCGGGGACAAGGGCAACCTGAACAGGCACGTGCAGGCACGTGCAGGTGAGTGCGACGCGTACCGgtgcgcgcactgcgcctacCGCACCGGGGACAAGGGCAACCTGAACAGGCACGTGCAGGCACGTGCAGGTGAGTGCGACGCGTACCGGTGCGCGCACAGCGCCTACCGCACCGGGGACAAGGGCAACCTGAACAGGCACGTGCAGACCCACCTGGAGCTGAACGCGAGGAAGCTGCACTACTGCGCGGCGTGCGGCAAGACCTTCACCACGCGCATGTCCATGAAGAACCACATGCTGCACGTGCACCAGAAGGTGCCGTGGCCGGcgagagcgcgagcgacgagaGCGCGCGGCGCGCCGCGTGCACGCAACACTGACTCTAGCGGGTCGTGA
- Protein Sequence
- MVLGDFNAHHTNLSLCSPSLASLSSWNILPSTYGSDHYPIVLSIAQRSIPTSNPSPLLKHKTSKANWSAFAASADCLSDTLPETIEDDNIPTYYDNFVRILKFSADLHIPLKKAKRDFLLSPPWWDEECTNMVNKRKEAERVYKMSMSQENFLKYQRTDAKCKRLLSKKKRNGWTRFCESLDPRSPISIVWDKIKKFRRSVCANDPPSNDASIWLDSFADKLAPPSVPHENCLPSISLLPSSDPMDAPFSISELQCVLSDLKDSSPGEDGIPYSFLTNLNPKAKLAYLKMINKLFELGVVPSSWKSQIIIPILKAGKDPLDPSSYRPIALSSTLAKTMEHLIKNRLEWAMESRGLLAKSQFGFRKGLGTMDSLGIFTTDIRTALARDVHSKLLQRSKYNLSVEYEHLTGIPPVGFNFTPMFCSECAQRLVNSAKLRDKSLRALKLLAKLHLNNPELSPETLSSVDRARCQLTSSVVKKTFEPNHCDLHLTDDSIVDKIYVKNEEDELPLEIKTETPKITEDIDALEFLDVDTDNRVEGIDDSSNDEDNIRDLKQRKTALEILIEAPVINDHDRLRNDDIDGLNDDISIDNDIPNDTNSLNEIDTHAKLLNTKNIKDVSNLNTKNNKSKNNKDVFNKKNKVSKLKLVSEAKCKLKSKLKKPKDKRKVKDIESLECKDSCTEKISSEENEVVTEVKKKRGRPKKIRPPPEPKVPKDYEELKEFKIIERTPEEQLADLRARQETDTYKRSLFQCTDCFKGFQDENAYNTHMERHTDKYGLHACPVCRVRVKRRLRVNHHVINIHKFLFHCRNCTFVTNHNKRTSYFNHLRTKHPSDHVCTLCGFSFIGERGLMSHVNKKHYADDKQVSRSYFNHLRTKHPSDHVCTLCGFSFIGERGLMSHVNKKHYADDKQVSRSYFNHLRTKHPSDHVCTLCGFSFIGERGLMSHVNKKHYADDKQVSRSYFNHLRTKHPSDHVCTLCGFSFIGERGLMSHVNKKHYADDKQVSRSYFNHLRTKHPSDHVCTLCGFSFIGERGLMSHVNKKHYADDKQVSRSYFNHLRTKHPSDHVCTLCGFSFIGERGLMSHVNKKHYADDKQELSGPQCKECDICFANQSAYQIHLNVSPKHAAPDELRTNDAHKVRSFLPNEKRRERGQRGGDKKCIIDCELCGAVLESRRKYYWHFRNCHPHASPAKMPRGPKPRARFMCEQCGKVFQVRAGDETQVRVASEGRRRDASTSRKYYWHFRNCHPHASPAKMPRGPKPRARFMCEQCGKVFQPRQDAARPQATRAVHVRAVREGVPGEGRRRDASTSRKYYWHFRNCHPHASPAKMPRGPKPRARFMCEQCGKVFQPRQDAARPQATRAVHVRAVREGVPGEGRRRNASTSRKYYWHFRNCHPHASPAKMPRGPKPRARFMCEQCGKVFEVRAGDETQVRVASEGRRRDASTSRKYYWHFRNCHPHASPAKMPRGPKPRARFMCEQCGKVFQPRQDAARPQATRAVHVRAVREGVPGEGRRRDASTSRKYYWHFRNCHPHASPAKMPRGPKPRARFMCEQCGKVFQPRQDAARPQATRAVHVRAVREGVPGEGRRRDASTSRKYYWHFRNCHPHASPAKMPRGPKPRARFMCEQCGKVFQPRQDAARPQATRAVHVRAVREGVPGEGRRRDASTSRKYHWHFRNCHPHASPAKMPRGPKPRARFMCEQCGKVFQPRQDAARPQATRAVHVRAVREGVPGEGRRRDASTSRKYYWHFRNCHPHASPAKMPRGPKPRARFMCEQCGKVFQPRQDAARPQATRAVHVRAVREGVPGEGRRRDASTSRKYYWHFRNCHPHASPAKMPRGPKPRARFMCEQCGKVFQPRQDAARPQATRAVHVRAVREGVPGEGRRRDASTSRKYYWHFRNCHPHASPAKMPRGPKPRARFMCEQCGKVFQVRAGDETQVRVASEGRRRDASTSRKYYWHFRNCHPHASPAKMPRGPKPRARFMCEQCGKVFQSKFHLGEHMSAHSGETPEQCDLCSKRFRSAASLRKHVERTHLRRCTERRPGDAYRCAHCAYRTGDKGNLNRHVQARAGECDAYRCAHCAYRTGDKGNLNRHVQARAGECDAYRCAHCAYRTGDKGNLNRHVQARAGECDAYRCAHCAYRTGDKGNLNRHVQARAGECDAYRCAHCAYRTGDKGNLNRHVQARAGECDAYRCAHCAYRTGDKGNLNRHVQARAGECDAYRCAHSAYRTGDKGNLNRHVQTHLELNARKLHYCAACGKTFTTRMSMKNHMLHVHQKVPWPARARATRARGAPRARNTDSSGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -