Carc010946.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072065.1:1132981-1139177[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.001 0.075 14.4 3.5 2 23 44 65 43 65 0.97 2 16 4.4 3.3e+02 2.9 3.9 1 19 72 90 72 95 0.92 3 16 0.00098 0.073 14.4 3.6 2 23 102 124 102 124 0.95 4 16 0.0046 0.34 12.3 2.2 1 23 130 152 130 152 0.98 5 16 4.3 3.2e+02 2.9 0.8 1 23 160 182 160 182 0.89 6 16 0.4 30 6.2 1.5 1 23 187 208 187 208 0.97 7 16 2.1 1.6e+02 3.9 0.3 3 22 268 287 266 289 0.85 8 16 0.1 7.6 8.0 1.7 1 23 299 321 299 321 0.95 9 16 7.7e-05 0.0057 17.9 0.5 1 20 327 346 327 348 0.95 10 16 0.003 0.23 12.9 1.4 1 23 359 382 359 382 0.95 11 16 0.0047 0.35 12.3 0.6 3 23 389 411 387 411 0.94 12 16 1.1 81 4.8 1.1 3 23 418 438 418 438 0.95 13 16 0.0012 0.089 14.1 0.3 1 23 443 465 443 465 0.97 14 16 7.4e-05 0.0055 17.9 1.2 2 23 472 493 471 493 0.96 15 16 7e-06 0.00052 21.2 1.7 1 23 499 521 499 521 0.98 16 16 3e-05 0.0022 19.2 1.8 1 23 527 550 527 550 0.98
Sequence Information
- Coding Sequence
- atggCTTCACTGACCCATAGAGAAGACATAGAGAGAACAGTGCAGTCGAGTATAATAGACAAATTGCAGAAAAATGTGAACAAAAATGTTGTGCCTAAATTGACCACCATTGGCAAAGTGGGCGGAATATATTGTCATATATGCGAGGTTACATTTAGCCACAAAAAAGCATTCACTGATCATTACAAGATACATGGGGAAGAAGAGGTAATATACACGTGTGTGGTCTGTCACAAGCAAACCAAGGTCTACGCAAGTTTCCGTGCCCACTGTTACAGTGTACATGTTGTTGGAAACAAAAACCGATGTCATCATTGTTATAAAGCTTTTTCCAACTCTACCAGTTTAGATGAGCACATTAAAGCCAACCACAGCCAACCTCAACAGTTTCAATGCTCAGTATGCCTTAAAAAgTTCAAGTCCCAACAAGAGCAGAAGCTGCATCAGACCATTCACGACAACAAAGATTCGCCGCCATACAACTGCCAAATCTGCAATCTTTTTTTGCCAACTCTAGACAACTGTAAGAGCCATGCAGAAGCACACACGGTGCTCATTTACCACTGTCCCATTTGCAATGAGAACATAAACAAACAAAACGCTAAAGATCATCTCAAGAAGCATTTTGATAGTAATTCACATCATGAAGAAACCACAGAAGTGAATATTAAAGATGAAGGTGCCACAGAAGTTAacttaaaagataaaaatgccatAGAAGTGAATATTGAAGATAAAAATGCTATAGAAGAAGATGATTCAGATAACGCAGAGACATCCGTTGAACATTTTGGTATCGCTTGTGACTTTTGCACGGTTGTGTTCAAAAGTAAACTGGAGTTTGATGATCATTTCTCAGAGGATCACGAGGAGCTGGTGGGCAGAGCCCTGGTGTACGTGTGTGTGGTGTGCAAGAAGAAGTTCGACAAGTATAGGGGGTTTTCTTCGCATGTCTACAATCATGCTGTAAAGGCCAAATTTAGCTGCAACGTGTGCCACAAGCGGTTCAAGCGGCTCTCGGCGCTGGCGACGCACACGGGCgtgtgcgcggcgggcgcgccggGCGGCAAGCCCTTCGCGTGCTCCGAGTGCGGCCACCGCTACAGCCTGGAGAGCAGCGTGCGCAAGCACCTGCGCGACACGCACGGCATACACCGCGTGCACTGCCCGGTGGACGATTGCGGCCAAACATTTGCAACAATGAAGGAGCTGGTCGTCCACCAGTACCACCACAAATCGGAGCAAGCTTGGTGCCGGCGCTGCGGCATGCGCTTCACGTCGCTGGCCGCCTGCGAGCAGCACCTGGAGGTGCACAAGCAGACGCTTCACAGCTGTCCCGTCTGCAGCCGGGACTACCCCGACAGGAGCCCGCTCATGAACCACATAATGCAGCACTTCGAAACCCTCATACTCATGTGCAAAATATGCGGAAAGGTCTTCAATCAGAGACGTCGCTTCTTGTATCACATGGAGACGCACAACGATAAGCAAACGCACGTCTGCTCGTACTGTAACAAGGGTTTCATGACGCAGGCGCAGTTGCGGGTGCACCTCAACACGCACACCGGCTCCAAGCCCTACAAGTGCGCGGTTTGTCACAAAGCGTTCGGCAACCTCGCCAACCTGTCCAAACATAAGCGCCGAATGCACATGAAACCCAATAGTGTAACCCTTAACcacaatcccacttctgatgctGCTATTCATTCAGAGAATCTTGAAGACGAACTTAAAACAAGTGATGTCattaataaaaacaacaatTTGAACACGCCTACAGTCAAGGCAGGATCGAATCAACGTAAGCGCCCACAAAAGATTGTgcctgaaaataaaatttacaaaaaacgCCCTACCACCTTTGATTTTAGAGTCAACAATAATTTAGAGAGTATTAACGATGACGAAGCACTACCGAGTGATGCCATTGCTAAATATAACAATCTGAACACACCTGAAATGGACAAAAAGTTGGGAGAATCAAATAAACTTCAGCGCCAAACGAAAATTATActcgaaaataaaatatctaaactCCATCCCACGTCTAACGCTAAACCTGAAACCCATTCAAGGAATTTTGAAGAAGataaatttataataggtcATGGTAATTTAAAAGAACCAAAAATGCAGAAAGTCGTTATATTGGATATCCAAAATGTATATTATCCTATACAAAATAAGACAGCGAAGCAAGAACACATTGATATAGAGCCAGAGCCTATAGACCGCATTGATTTGGAGAAGGAGCTGCAGTTGATAGAGAATATTTCAAAGAACGCAGATAACCAAGATGCTGTGTATGGGGATGTGCTGTCAAATAGAAACACCGTTTTTGATTATGTGGGCATAGACGAACTCCCAACCACAGATTCCTCGGACCAAACCAACTACCCTCAGGAGTACGGGCCTGAATTCCCCGTCCAGGACTGCGGGATTCTCAACCTGGACGACCACATGCTGCCCCACATCGACCCGCTCCTCACCATCAAGACTGTGGACTACGGAACCCCCAACGGCTTCCTGCCCCCGAACAGCGAGGCTAGCGCCTATCAAGAGTACCAAACCCCAACGTGGGAGCCCCCCATTTACAAATGCCCCGATTACAACTACCACGGGACCAGCACGTACCAGGAGTACCAAGCCCCGGGATGGGAGCCCCCAATTTTCACCAAGGTATGTCCGGAGTACACATATTACGGGGACATGGCTGACTCGAGCCGGCCCTCCATGATGAATACAGATATATTTTGA
- Protein Sequence
- MASLTHREDIERTVQSSIIDKLQKNVNKNVVPKLTTIGKVGGIYCHICEVTFSHKKAFTDHYKIHGEEEVIYTCVVCHKQTKVYASFRAHCYSVHVVGNKNRCHHCYKAFSNSTSLDEHIKANHSQPQQFQCSVCLKKFKSQQEQKLHQTIHDNKDSPPYNCQICNLFLPTLDNCKSHAEAHTVLIYHCPICNENINKQNAKDHLKKHFDSNSHHEETTEVNIKDEGATEVNLKDKNAIEVNIEDKNAIEEDDSDNAETSVEHFGIACDFCTVVFKSKLEFDDHFSEDHEELVGRALVYVCVVCKKKFDKYRGFSSHVYNHAVKAKFSCNVCHKRFKRLSALATHTGVCAAGAPGGKPFACSECGHRYSLESSVRKHLRDTHGIHRVHCPVDDCGQTFATMKELVVHQYHHKSEQAWCRRCGMRFTSLAACEQHLEVHKQTLHSCPVCSRDYPDRSPLMNHIMQHFETLILMCKICGKVFNQRRRFLYHMETHNDKQTHVCSYCNKGFMTQAQLRVHLNTHTGSKPYKCAVCHKAFGNLANLSKHKRRMHMKPNSVTLNHNPTSDAAIHSENLEDELKTSDVINKNNNLNTPTVKAGSNQRKRPQKIVPENKIYKKRPTTFDFRVNNNLESINDDEALPSDAIAKYNNLNTPEMDKKLGESNKLQRQTKIILENKISKLHPTSNAKPETHSRNFEEDKFIIGHGNLKEPKMQKVVILDIQNVYYPIQNKTAKQEHIDIEPEPIDRIDLEKELQLIENISKNADNQDAVYGDVLSNRNTVFDYVGIDELPTTDSSDQTNYPQEYGPEFPVQDCGILNLDDHMLPHIDPLLTIKTVDYGTPNGFLPPNSEASAYQEYQTPTWEPPIYKCPDYNYHGTSTYQEYQAPGWEPPIFTKVCPEYTYYGDMADSSRPSMMNTDIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -