Carc025760.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- RXLR161
- Assembly
- GCA_036785405.1
- Location
- CM072081.1:7392176-7412786[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00032 0.024 15.9 1.6 1 23 444 466 444 466 0.98 2 19 0.16 12 7.4 0.6 2 23 474 496 473 496 0.91 3 19 0.12 9.2 7.8 0.1 1 23 500 522 500 522 0.97 4 19 0.00051 0.038 15.3 3.5 1 23 527 550 527 550 0.98 5 19 0.68 51 5.5 1.3 1 23 555 578 555 578 0.88 6 19 0.057 4.3 8.8 0.0 2 20 590 608 590 610 0.93 7 19 0.88 65 5.1 0.7 2 15 680 693 679 696 0.83 8 19 0.88 65 5.1 0.7 2 15 725 738 724 741 0.83 9 19 0.88 65 5.1 0.7 2 15 770 783 769 786 0.83 10 19 0.88 65 5.1 0.7 2 15 815 828 814 831 0.83 11 19 0.88 65 5.1 0.7 2 15 860 873 859 876 0.83 12 19 0.28 21 6.7 0.8 2 17 905 920 904 921 0.90 13 19 0.067 5 8.6 3.7 2 23 950 971 949 971 0.96 14 19 3.9e-05 0.0029 18.8 1.4 2 23 978 999 977 999 0.96 15 19 0.00048 0.035 15.4 1.5 1 23 1006 1028 1006 1028 0.98 16 19 0.0011 0.082 14.2 1.4 1 23 1039 1061 1039 1061 0.97 17 19 0.002 0.15 13.4 0.7 5 23 1077 1095 1074 1095 0.95 18 19 0.00032 0.023 15.9 2.2 1 23 1102 1124 1102 1124 0.99 19 19 5.5e-05 0.0041 18.3 4.7 1 23 1133 1156 1133 1157 0.94
Sequence Information
- Coding Sequence
- ATGAGCAACGCAAATAGCAGTAGCATTCCCGTCGATCCTTATACTACGCTGGAGAAGAGCAAGTCAGAACCTGACCGCAGAATACCATACAGAGAAGCAGTAGGGTCTCTCATGCATTTGGCTATAGTGAGTAGACCTGATATTATGTATGCTGTCAGCTTAGTGAGTCGGTATTTGGATAACTTTGACAATACTCACTGGAATGCTGTCAAGAAGATACTTAAATATCTAAAGGAAACTCAAGACTATGGTCTCTGTTATTCAGCAGCAACTAAAAACATTGTTGAGGGCTACAGTGATGCTGATTATGCAAAAGACACTGAAACCAGGAAATCCACGACTGGTATTAATAAACCTCTCGAACAGTACAGTATTAATAAACCTCTCGAAAACATCTCTTTACAGACATTCAAAAGTGAAAAAGAGGATTCTATACGGTTAGAATTTGAAGACGTTAGTGTAAGCGACATTAAATGTGAGTTTGATTTTGTCCAAAATGACACTAACGACTCTAGTAACAGTGTAGACGTTATTGATATTGAGCTACCATCGAACGAGAGCGATGCTCGAGCTATAGACAAAACGAATACAAATATTAACGTTAAAAACAAGGAGCGAATACTTAATtgtgaaatagaaaaaaaagagaTTATCTCTGAACTCAAATGCTTAGGAGATTACGACTATGACTTTGATGATGATACAAATGAAACTGAAATAATACAGGAGAATGATAAAACTGATGTCAAAGACAATGACAAAAGCAATGGCAGAGACAATGAAGTGCAATGCTTAGACGATGATATAGAAATAGATGTTGATATAGACAATGATACCAAAGATTCAAAGAAATACATACACGTGAAATTTCTAAACAATTTAATCTCTAAAggaaatcataattattacaaaaatgaaaacatAAATAATCGTATACTTAAAAGAGTAAAGTCCGAAAGAGTGAACTTGGTTTCACTTAAGAAAATAACTAGAACCGTTAAACAATATGAGAGagtttataacaataaaaaagttAGAAGAAACACTGGACTCGATAAACCAAAAGGTGGTGTTAAACTGAAAAATGCAATCAAAGATAGGACCTCAGCTGTTAAATCTAAAAGGGTTTACGTTAAGAAGACAGATAGCGAAGGAAATGTCGTTGCGAAAGGAGTGAAACGAAAACGACGaccgaagaaagaaaaaaagcaaaaagCTCTCGTAGAGTATGAAGAGTTAAAAGCGTTCGAAGTAACAGAACGCAGCCTGGAGGAGCAGATCGCTGATTGGATGGTGAGACAGCAGAGTGACAGCTACCAACGCGCTCGGTACAAAtgcaccacttgctacaaagcTTTCAGCGATATGGAGCTGTATAACTCACATATGGACAGACATACAGAGAAATTCGGTGTGCTCACGTGCCCCGTCTGCCAGATCCACGTGAAGCGTCGCGGGAGGCTCACCAGTCACGTGGACAACAACCACCGCTACCGGTACACTTGCTCCGCGTGTCCCTTCGTCACCACCGACAAGGGCAGCGCGATCCGTCACACGCAGTGGCACAACGGCATAAAGTATAAATGTCCACACTGCGACAAAGAGTTTGAGAAATATACGTCCAGGCTGTCGCACATGCGCATAAAGCACCCCTCCTCGGAGCACGTGTGCGCGCTGTGCGGGTTCTCCTTCGTCAGCGAGAAGGGGCTCATGTTCCACACCAGCAAGAAGCACTACTGCGACGACAAGCAGAAGCTGTCCGGTCCCCGCTGCGAGGAGTGCGGCGTCCGCTTCGGGAACCGCGCCGCGTACGAGACGCACGTGAGCGTGTCGCCCAAACACGCGGGGCCCGGGCTAATCCAGGCGAACGAGGCTGGCAGAAAGAAGATCCGCAAGAAAGAAAGAAACGAGGATTCAGCGAAAGAGATCGAGTGCGAAGTGTGCGGTCTCGAGCTGGACAGCGGACGCAGCTACCGGTTCCACTTGATGGCGAGTCACCCGCAGCACAACCGCACCAAGTTCTCCCGCGCCGTGCTCATGTGCGACCAGTGCGGGAAAGTGTGCAATGTGAGTAGTAACAACAACCACAGCGACAGCGGACGCAGCTACCGGTTCCACTTGATGGCGAGTCACCCGCAGCACAACCGCACCAAGTTCTCCCGCGCCGTGCTCATGTGCGACCAGTGCGGGAAAGTGTGCAATGTGAGTAGTAACAACAACCACAGCGACAGCGGACGCAGCTACCGGTTCCACTTGATGGCGAGTCACCCGCAGCACAACCGCACCAAGTTCTCCCGCGCCGTGCTCATGTGCGACCAGTGCGGGAAAGTGTGCAATGTGAGTAGTAACAACAACCACAGCGACAGCGGACGCAGCTACCGGTTCCACTTGATGGCGAGTCACCCGCAGCACAACCGCACCAAGTTCTCCCGCGCCGTGCTCATGTGCGACCAGTGCGGGAAAGTGTGCAATGTGAGTAGTAACAACAACCACAGCGACAGCGGACGCAGCTACCGGTTCCACTTGATGGCGAGTCACCCGCAGCACAACCGCACCAAGTTCTCCCGCGCCGTGCTCATGTGCGACCAGTGCGGGAAAGTGTGCAATGTGAGTAGTAACAACAACCACAGCGACAGCGGACGCAGCTACCGGTTCCACTTGATGGCGAGTCACCCGCAGCACAACCGCACCAAGTTCTCCCGCGCCGTGCTCATGTGCGACCAGTGCGGGAAAGTGTGCAATGTGAGTAGTAACTACAACCACAGCGACAGCGGACGCAGCTACCGGTTCCACTTGATGGCGAGTCACCCGCAGCACAACCGCACCAAGTTCTCCCGCGCCGTGCTCATGTGCGACCAGTGCGGGAAAGTATGCAATAGCAAGCACATCTTCAAGGAACACTTGTTGACACACAGCGGGGAAAAGCCGCTTGAGTGCAGCGTCTGCGGCAAGAGGTTCCGTCACAGCGCCAGTTTCAAGGTGCACGTGGAGCGGCACAGCGCCACCGCGCCCAGCTAccagtgcgcgcactgcgcctacGAGACCAAGGACAAGGGCAACCTGACCAGGCACACGCAGGTGCACGTGGAGCGGCACAGCGCCACCGCGCCCAGCTAccagtgcgcgcactgcgcctacGAGACCAAGGACAAGGGCAACCTGACCAGGCACACGCAGGCACACGCAGGTCAGTGCAACACGGCCACGCTGTCAACACACACGGACTCCGTCTGCGGCAAGAGGTTCCGTCACAGCGCCAGTTTCAAGGTGCACGTGGAGCGGCACAGCGCCACCGCGCCCAGCTAccagtgcgcgcactgcgcctacGAGACCAAGGACAAGGGCAACCTGACCAGGCACACGCAGACCCATCTCGACCCGAACGCGAGGAagctacattactgcagcgaaTGCGGGAAAACTTTCACAACGTCAGCGGCGATGAAGAACCACATGCTTCACGTACACCACAAGGTGCCGTGGCCCAAGAGAGAGAGGCCTTCTGGACCCCGTGTGCAGGCCCCCAAATCTGAATATGCAGACTATAGACTCGAGTGA
- Protein Sequence
- MSNANSSSIPVDPYTTLEKSKSEPDRRIPYREAVGSLMHLAIVSRPDIMYAVSLVSRYLDNFDNTHWNAVKKILKYLKETQDYGLCYSAATKNIVEGYSDADYAKDTETRKSTTGINKPLEQYSINKPLENISLQTFKSEKEDSIRLEFEDVSVSDIKCEFDFVQNDTNDSSNSVDVIDIELPSNESDARAIDKTNTNINVKNKERILNCEIEKKEIISELKCLGDYDYDFDDDTNETEIIQENDKTDVKDNDKSNGRDNEVQCLDDDIEIDVDIDNDTKDSKKYIHVKFLNNLISKGNHNYYKNENINNRILKRVKSERVNLVSLKKITRTVKQYERVYNNKKVRRNTGLDKPKGGVKLKNAIKDRTSAVKSKRVYVKKTDSEGNVVAKGVKRKRRPKKEKKQKALVEYEELKAFEVTERSLEEQIADWMVRQQSDSYQRARYKCTTCYKAFSDMELYNSHMDRHTEKFGVLTCPVCQIHVKRRGRLTSHVDNNHRYRYTCSACPFVTTDKGSAIRHTQWHNGIKYKCPHCDKEFEKYTSRLSHMRIKHPSSEHVCALCGFSFVSEKGLMFHTSKKHYCDDKQKLSGPRCEECGVRFGNRAAYETHVSVSPKHAGPGLIQANEAGRKKIRKKERNEDSAKEIECEVCGLELDSGRSYRFHLMASHPQHNRTKFSRAVLMCDQCGKVCNVSSNNNHSDSGRSYRFHLMASHPQHNRTKFSRAVLMCDQCGKVCNVSSNNNHSDSGRSYRFHLMASHPQHNRTKFSRAVLMCDQCGKVCNVSSNNNHSDSGRSYRFHLMASHPQHNRTKFSRAVLMCDQCGKVCNVSSNNNHSDSGRSYRFHLMASHPQHNRTKFSRAVLMCDQCGKVCNVSSNNNHSDSGRSYRFHLMASHPQHNRTKFSRAVLMCDQCGKVCNVSSNYNHSDSGRSYRFHLMASHPQHNRTKFSRAVLMCDQCGKVCNSKHIFKEHLLTHSGEKPLECSVCGKRFRHSASFKVHVERHSATAPSYQCAHCAYETKDKGNLTRHTQVHVERHSATAPSYQCAHCAYETKDKGNLTRHTQAHAGQCNTATLSTHTDSVCGKRFRHSASFKVHVERHSATAPSYQCAHCAYETKDKGNLTRHTQTHLDPNARKLHYCSECGKTFTTSAAMKNHMLHVHHKVPWPKRERPSGPRVQAPKSEYADYRLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -