Carc023974.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072079.1:2277828-2308639[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.13 9.9 7.7 0.2 1 23 54 76 54 76 0.93 2 34 0.0022 0.16 13.3 3.4 1 23 82 104 82 104 0.98 3 34 5.7 4.2e+02 2.6 0.1 2 20 292 310 291 312 0.90 4 34 0.0035 0.26 12.7 0.2 1 23 390 412 390 412 0.97 5 34 3.9 2.9e+02 3.1 7.2 1 23 419 441 419 441 0.95 6 34 0.012 0.9 11.0 2.4 1 23 476 499 476 499 0.95 7 34 0.27 20 6.7 0.3 1 13 506 518 506 519 0.91 8 34 0.029 2.1 9.8 0.1 2 23 520 542 519 542 0.95 9 34 0.35 26 6.4 0.1 2 19 597 614 596 615 0.94 10 34 0.35 26 6.4 0.1 2 19 646 663 645 664 0.94 11 34 0.35 26 6.4 0.1 2 19 695 712 694 713 0.94 12 34 0.35 26 6.4 0.1 2 19 744 761 743 762 0.94 13 34 0.35 26 6.4 0.1 2 19 793 810 792 811 0.94 14 34 0.35 26 6.4 0.1 2 19 842 859 841 860 0.94 15 34 0.35 26 6.4 0.1 2 19 891 908 890 909 0.94 16 34 0.35 26 6.4 0.1 2 19 940 957 939 958 0.94 17 34 0.35 26 6.4 0.1 2 19 989 1006 988 1007 0.94 18 34 0.35 26 6.4 0.1 2 19 1038 1055 1037 1056 0.94 19 34 0.35 26 6.4 0.1 2 19 1087 1104 1086 1105 0.94 20 34 0.35 26 6.4 0.1 2 19 1136 1153 1135 1154 0.94 21 34 6.8 5e+02 2.3 0.2 11 23 1166 1178 1165 1178 0.92 22 34 0.35 26 6.4 0.1 2 19 1185 1202 1184 1203 0.94 23 34 0.35 26 6.4 0.1 2 19 1234 1251 1233 1252 0.94 24 34 0.35 26 6.4 0.1 2 19 1283 1300 1282 1301 0.94 25 34 0.35 26 6.4 0.1 2 19 1332 1349 1331 1350 0.94 26 34 0.35 26 6.4 0.1 2 19 1381 1398 1380 1399 0.94 27 34 0.35 26 6.4 0.1 2 19 1430 1447 1429 1448 0.94 28 34 0.35 26 6.4 0.1 2 19 1479 1496 1478 1497 0.94 29 34 0.35 26 6.4 0.1 2 19 1528 1545 1527 1546 0.94 30 34 0.35 26 6.4 0.1 2 19 1577 1594 1576 1595 0.94 31 34 0.35 26 6.4 0.1 2 19 1626 1643 1625 1644 0.94 32 34 0.35 26 6.4 0.1 2 19 1675 1692 1674 1693 0.94 33 34 0.35 26 6.4 0.1 2 19 1724 1741 1723 1742 0.94 34 34 0.35 26 6.4 0.1 2 19 1773 1790 1772 1791 0.94
Sequence Information
- Coding Sequence
- ATGACTCCAATCGCCCCGCTATGTCAGATGCTGTATCAACTGGAGATTTCAACATTCCTCAGCCGCCCCCTCTACCACAACAAAGCCATCAAACTGCTCAAATTAGACCAAATGGCAACACTAACGAAGCACAGTCGAACGCACACAGACACACGCCGCTATGTGTGTGTGACTTGCGGCAAGCGGTTCCTTGACAAGCAAACCTTGGACGAGCATGGTGTCACTCATTTACAGATCAAGCCGTTCCAGTGCCACGTGTGCTTGAAGCAGCTGACGCGCAGGTCGCGGCTGAGGATGCACATGCGCGCGCACGAGGAGGAAGTGCTGCCGGCGCTGGTGCTCGTGTGCGCCGTGTGCAGCAGGGCCTGCCGGGACCGCGCCGACGCGCAGATCGAGCCGTTCCAGTGCCGCGTGTGCTCGAAGCGGCCGACGCGCAGTACAAGTGCTGCCGGCGCTGGTGCTCGTGTGCGCCGTCTGCAGCAGGGCCTGCCGGGACCGCGCCGACGCGCAGGTGACTGCACACTGCCGCACAGAGCGCGATCACACATTGTAGATCGAGCCGTTCCAGTGCCGCGTGTGCTCGAAGCGGCCGACGCGCAGTACAAGTGCTGCCGGCGCTGGTGCTCGTGTGCGCCGTCTGCAGCAGGGCCTGCCGGGACCGCGCCGACGCGCAGTGCCGCGTGTGCTCGAAGCGGCCGACGCGCAGTACAAGTGCTGCCGGCGCTGGTGCTCGTGTGCGCCGTCTGCAGCAGGGCCTGCCGGGACCGCGCCGACGCGCAGAGCGTGATCACACATTGTAGATCGAGCCGTTCCAGTGCCGCGTGTGCTCGAAGCGGCCGACGCGCAGTACAAGTGCTGCCGGCGCTGGTGCTCGTGTGCGCCGTCTGCAGCAGGGCCTGCCGGGACCGCGCCGACGCGCAGGAGCACGTCGTGAAATCCACCGCCTGTCTAGCTGAGTTCTCAAGCGATATCAAAGAAGAACCGGATGCCACCGAACAGCTCTCGCCAACTAGTGGGATTGTGAGGCACACCGTAAGAGTCGTTGAATTCCCTCGCGCCAAGCAGCCAATACCAAAAGAGGTGAACAACGAGGCAAGTGAGCGGCTGCTGTCATCGTTGGACGACGTGGCTCGGAGCGTCATACGAGTTGTCGAAATCGAGAAGGCGTTCCGCTGTGAATACTGCGAAGAaGTATTCTACTTGGAAGATGCACTGAATAACCACAGAGTTTCACACAAGGGTGTAAAAAACCCTTTCACCTGCCACATCTGTAAAGTCAGCTTTGCTACCTACTCAAGATGCACTACCCACAAAACCACCCACGGGTTCTATAAACGCAGCACCGCAGACGGCCACTCTGAAGAGGCGACCGGCCCCGCTAACGCCGGCATCCTGGGCTACGGGGGATTCCCCGTGGTCAAGCACTTCCTGTGCGAGGACTGTGGCAGATCTTACCTGCACTGGACGTACTTCCAAGTGCATCGTCGCATGAAGCACGCCAACGAGAACTACGTCTTCAAGTGCAACCAGTGTGGACTCACCTTCCCCAATAGAATACCCTGCCGCGACTGCGACGAGGTTTTGCCAAACAAAATTGCACTGTATAAACATAGACAGAAGGAGCATTGTGGCGATTCTATGATTGACAATGATGtaaAAGGCTCGCACGGAACCACGGTCTGTACGGAGTGCGGTGACAACTTAGCcaacggcgcggcgctgcgacgGCATTGCAAGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTTAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGCGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCGAGCACCACACATATCTTTCACTTGTGTGCAGGTGTTCAGCGCTGCGGAACCATCAGCTCGTCCACCCGGGCGAGCGCGCGTGGCGCTGCGGGAGCTGCCCCAGGCGCTTCCGCCTCGAGGCCGACCTCACGACGCATACGTGGCTCAAGCACCGCGCGCACTTGGCCGTCATTGAGGTTGAAGGCATACAATGCAGCCCTGAAGAAGTTTTGAAACATCTGAAGCAGAATGGAATAGCGCGGGACGACGTCGTCGAGGTCACCATGATTTCATTCCCGAAGGACTCCTCGAATATAGTCCCGGATTCCCTTAAAGCGCTGTCTTTGCTGAGTGATGTGCCGAGGACCAAGATTCCTTGCACCTGGCATCGACCAGGTGACTGCCTCCTTTATACGCTGACCTCAGCGATAAGGAACCTgttatga
- Protein Sequence
- MTPIAPLCQMLYQLEISTFLSRPLYHNKAIKLLKLDQMATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHVCLKQLTRRSRLRMHMRAHEEEVLPALVLVCAVCSRACRDRADAQIEPFQCRVCSKRPTRSTSAAGAGARVRRLQQGLPGPRRRAGDCTLPHRARSHIVDRAVPVPRVLEAADAQYKCCRRWCSCAPSAAGPAGTAPTRSAACARSGRRAVQVLPALVLVCAVCSRACRDRADAQSVITHCRSSRSSAACARSGRRAVQVLPALVLVCAVCSRACRDRADAQEHVVKSTACLAEFSSDIKEEPDATEQLSPTSGIVRHTVRVVEFPRAKQPIPKEVNNEASERLLSSLDDVARSVIRVVEIEKAFRCEYCEEVFYLEDALNNHRVSHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSTADGHSEEATGPANAGILGYGGFPVVKHFLCEDCGRSYLHWTYFQVHRRMKHANENYVFKCNQCGLTFPNRIPCRDCDEVLPNKIALYKHRQKEHCGDSMIDNDVKGSHGTTVCTECGDNLANGAALRRHCKCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCLALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRRSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLEHHTYLSLVCRCSALRNHQLVHPGERAWRCGSCPRRFRLEADLTTHTWLKHRAHLAVIEVEGIQCSPEEVLKHLKQNGIARDDVVEVTMISFPKDSSNIVPDSLKALSLLSDVPRTKIPCTWHRPGDCLLYTLTSAIRNLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -