Carc022217.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072076.1:11044038-11045294[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.1 7.8 8.0 1.4 1 23 92 115 92 115 0.96 2 10 0.096 7.2 8.1 0.1 2 23 143 165 142 165 0.95 3 10 0.0066 0.49 11.8 0.7 2 23 188 209 187 209 0.97 4 10 0.00076 0.056 14.7 1.8 1 23 213 235 213 235 0.98 5 10 4.8e-05 0.0036 18.5 0.1 1 23 240 263 240 263 0.95 6 10 0.0012 0.092 14.1 1.1 2 23 271 293 270 293 0.97 7 10 0.00021 0.016 16.5 2.2 2 23 301 323 301 323 0.96 8 10 1.3e-06 9.4e-05 23.5 1.2 1 23 329 351 329 351 0.99 9 10 1.3e-05 0.00094 20.3 0.7 1 23 357 379 357 379 0.99 10 10 3.8e-05 0.0028 18.8 1.8 1 23 385 408 385 408 0.97
Sequence Information
- Coding Sequence
- ATGATACAAATCGTTATTGAGccgaaaaatatcaaaaaagaaataatcgaCGACGATGCGTCGGACGAGTGTGCGAATAAAAAAGTCAAGAAGACTGTTAAGACTAAAAAAACTAGTCGTAGAGAAACAACAACAGTAACTGTAAAAATAGAAAGAGAATCGCCTGATAAGGGAGACACACCCGCTACCGAGAAAAACAAACATACGAACAACTTCGAAGTTGTGCTAGAATACTCAAATGCTACACCTATTCGTAGTCACGACGGACTTGCATATAACTGCTGCTTTTGTACCGATCAGTATGTTAATCCGGCCGATTTGAAAGCTCACACGCTGACCAAACACAGCAATAGTAAGGTTAGACGAGAATTCATGAAGAAAAAGACATCGACCACGTATCTGCTCAAACTAGATATAACTTCATTGAAATGTAAGTTGTGCGAAGAAACCATTGACACGCTAGAAGGATTGTTTGATCACTTGCAAAACGAACACGACAAGCTTATCTATACGGATGTCAAGAACCAGATAATTCCCTTCAAATTCGACGGAGAAGAACTCCAATGCGCCATTTGTTCACTGGCCTTCGGCAAATACAAGATGCTCTTGGAACACATGCATACGCATTACAGAAATTACGTTTGCGAGATCTGCGATTGCGGCTTCATCAATCGGAGGTCGTTTTTGTCCCACAAGGAAACGCACGTGACTGGGAAATTTGAGTGTGAGGAATGCGACAAAGTATTCGAGAATCCCCAGAGCAGACGAACGCACATAAATGCTGTTCACAAGCTCAGGAACTTGCCGAGCAAGTGTGGCTTCTGCAACGAGAGGTTCAAGACCAACACCATGAGAGAGCAGCACATGATAACGGCGCACGGCAAGTCGCCGGTGATGCGCAAATGTCTGTCTTGCGACAGAACGTTTACGGATCAGAATTCTTTGCGGTTGCACACGAAGAGAGATCATCTGCGAGAGAGGGACTACCAATGCCCGGAGTGCGTGAAGAGCTTCTTCACCATATCGCAATTGAAAAGGCATCTCTTGAAGCACACGGGCGAAAGGGATTTCCAGTGTGACGTTTGCACGAAGTGGTTCTCGAGGAAGTCAGTTTTGACGGAGCATATGCGCATCCACACAAACGACAGGAGGTTCACGTGTCGGCTGTGTGGACGAGGGTTTGTGCAGAAGTACAGTTGGCGCTATCACATGAAATCTACCCATGGAGAGACAGATGATGGGAAATCTGTAACTTAG
- Protein Sequence
- MIQIVIEPKNIKKEIIDDDASDECANKKVKKTVKTKKTSRRETTTVTVKIERESPDKGDTPATEKNKHTNNFEVVLEYSNATPIRSHDGLAYNCCFCTDQYVNPADLKAHTLTKHSNSKVRREFMKKKTSTTYLLKLDITSLKCKLCEETIDTLEGLFDHLQNEHDKLIYTDVKNQIIPFKFDGEELQCAICSLAFGKYKMLLEHMHTHYRNYVCEICDCGFINRRSFLSHKETHVTGKFECEECDKVFENPQSRRTHINAVHKLRNLPSKCGFCNERFKTNTMREQHMITAHGKSPVMRKCLSCDRTFTDQNSLRLHTKRDHLRERDYQCPECVKSFFTISQLKRHLLKHTGERDFQCDVCTKWFSRKSVLTEHMRIHTNDRRFTCRLCGRGFVQKYSWRYHMKSTHGETDDGKSVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00354417;
- 90% Identity
- iTF_00354417;
- 80% Identity
- -