Carc005127.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072059.1:7598169-7601196[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0032 0.24 12.8 0.2 5 23 343 361 342 361 0.96 2 11 0.28 21 6.7 0.0 1 23 367 389 367 389 0.81 3 11 0.43 32 6.1 0.7 2 23 397 418 396 418 0.93 4 11 8.1e-08 6e-06 27.3 1.3 2 23 423 444 423 444 0.98 5 11 0.00084 0.062 14.6 3.9 1 23 450 472 450 472 0.98 6 11 0.019 1.4 10.4 0.3 1 20 476 495 476 497 0.94 7 11 0.0061 0.45 11.9 0.1 1 23 530 553 530 553 0.94 8 11 0.00052 0.039 15.3 0.1 1 23 573 595 573 595 0.97 9 11 9.3e-05 0.0069 17.6 4.5 1 23 601 623 601 623 0.98 10 11 0.0034 0.26 12.7 0.3 3 23 631 651 629 651 0.98 11 11 1.5e-05 0.0011 20.1 1.1 1 23 657 680 657 680 0.97
Sequence Information
- Coding Sequence
- ATGGATTCTTTGTCGCATTTGTGTCGATGCTGTCTGTCTCCTGATGCAGATGTTTCACTTTTGAAAGAAGACCAAAATCTTAAAGAGCAATTTTTGGAAACCACTAGTATTGAGattattCAAGGTGACGGGCTACCTCACAACCTCTGCAATAATTGTTACACACTTTTGTTATCTGCATATGAGTTTCGGGTGCAGTGTCAGAAGATAGACAAAGAACTGAAAAATCAGCTTGAAGCACCAATGGATCAAAGACAGGGTGGCTTCTCAAAAAATCAGATTAAAACAACTCCAGCCTTGACTATGGACGATCTAACAAAGGAATCAATGAAACAACTCGAAAGTATAATAAAGCAGGAACCTTGTGATAGCGATGATGACTTTTActatgttgttgttgttgataAACCAGAGGACAGTACTGATGGAGATGGTAAAAATGATCTTGGAATGACTGCAGAATATGATAATGAGCAGGCTGTGGATGCTGAAGTCCAAAAGAACATAAAAAGCAGCACCGCTTTTCAAAGTGTTGAATCGTTTCTTGTTTCAAACCCAAAAATTTCTCTGCATGTACCAGCTAATATACTGGAGAATGAGGATAGCCAGGATGCTGAAAATTACGAAAATGTTATGATGGACGTAAACGAAGTGAGTCAGCCATCTCAAGTTCATACTCTATCCATAACGGAAGACTCTCAGGACAAACcagaaaacaaatattcagtTATGGTCACCGATAACATCAATAACTTTCAGAGTAAAAACTTCATCAAAATTCTCACTCCATCTGGTGCTGAACAGACAATACTAATTAAGAGTGAAGATGGTTTAGAATATATCACAGATCCTAATTTGGAGAAAGGTGTGGATGAAGATTCTATGGGTGAAGAAGTGCTATTCTATGAAGGTGATGAATCTGATCTTCAAATATTGAAAGGCGATGGCTCTGAACTGATCATAGAATATGCGGATGACAGTCACATCGCTACAATTATACAACAAGATGATGGGACATTCCTCTGTGAATGTGGGGAGTCTTTTGATGACCTGTCTAACTATGAGACACATCAACTGCAACATAATCAAAGTGAAGAGTTCTTGTGTAATCTTTGTGGCAAAGGATTTGAATCGGGTGAAATATTGGCAGGACATATGATCCTTCACCGCACAACAGGCTTCTTAGTCACTTGCCCATTCTGCAACCAAGAGGTGAAGAGAAATACTCTCACTCAACATATAAAATACACTCACAATAGCAAACCAAAATGTCAACTATGTGGAAAGACATTTGCAAACCAAAATAATCTGAAGCGCCACATGATGATTCATACTGGCATCAAGGAGTTTGAGTGTGATATTTGTCAGAAAAGGTTCCACCAGAAAATCACTATGCAAACGCATAGACTGACGCATGTAAACCCATTCACATGCTATCAATGCGGGATTAAGTTTGATAGTAAACTATCCTTGGCAACACATAAAGGAAGCTCTGACTGTCATGACATGAGACGAGTGAAAGCTAAGGAAGAGTTGATGAAAACAGTGAAGCAAGAAATTATGACTACTGGAGGGAAGTTGTTGGGTTATGCTTGCTCTTTGTGCAAGAAAATGTTCTCTGTCGAGGCTGCGTTGGACCAACATGTTGCAAGTAAACACATGTTGGATTCTGACGATGGAGGTGCTGAAGGGAAGTTTAAGAAGAATTTGAAAAGGTTTGACTGCCTAATATGTGGTAAGGGGTGCGCGAGTCAGGCGATGCTCATCATGCATGAACGAGTCCACACCAATGAGCGTCCCTTTCCCTGCCAGCTGTGCTCACTCCGGTTCAAGACTAAAACCCATTTGCGAACGCATCAGCTAACCCACACTAGGGAGAAGAAGTTTGGGTGCTCTGTTTGCATGAAATTCTTTGCTCTGAAGGGCAATTTGGTTGTTCATTTAAGGACGCACACAGGCGAGAGACCGTATGTCTGTACGCTGTGCGGAGAAGCCTTCATTGACTCCAAATATCTTAAAAAGCACAAACAAAAGAAACACGCTATTGAAGGAAATGTACCGTGGAACAAGTTTGATTAG
- Protein Sequence
- MDSLSHLCRCCLSPDADVSLLKEDQNLKEQFLETTSIEIIQGDGLPHNLCNNCYTLLLSAYEFRVQCQKIDKELKNQLEAPMDQRQGGFSKNQIKTTPALTMDDLTKESMKQLESIIKQEPCDSDDDFYYVVVVDKPEDSTDGDGKNDLGMTAEYDNEQAVDAEVQKNIKSSTAFQSVESFLVSNPKISLHVPANILENEDSQDAENYENVMMDVNEVSQPSQVHTLSITEDSQDKPENKYSVMVTDNINNFQSKNFIKILTPSGAEQTILIKSEDGLEYITDPNLEKGVDEDSMGEEVLFYEGDESDLQILKGDGSELIIEYADDSHIATIIQQDDGTFLCECGESFDDLSNYETHQLQHNQSEEFLCNLCGKGFESGEILAGHMILHRTTGFLVTCPFCNQEVKRNTLTQHIKYTHNSKPKCQLCGKTFANQNNLKRHMMIHTGIKEFECDICQKRFHQKITMQTHRLTHVNPFTCYQCGIKFDSKLSLATHKGSSDCHDMRRVKAKEELMKTVKQEIMTTGGKLLGYACSLCKKMFSVEAALDQHVASKHMLDSDDGGAEGKFKKNLKRFDCLICGKGCASQAMLIMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCTLCGEAFIDSKYLKKHKQKKHAIEGNVPWNKFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00354411;
- 90% Identity
- -
- 80% Identity
- -