Carc023359.2
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072078.1:2085906-2102922[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.3e-05 0.0054 17.9 4.3 1 23 257 279 257 279 0.99 2 13 0.00029 0.021 16.1 4.7 1 23 285 307 285 307 0.99 3 13 0.018 1.4 10.4 0.7 1 23 403 425 403 425 0.97 4 13 1.2 85 4.7 0.6 1 23 432 454 432 454 0.92 5 13 2 1.5e+02 4.0 0.4 1 9 458 466 458 481 0.73 6 13 1.9e-05 0.0014 19.8 5.6 1 23 488 511 488 511 0.95 7 13 0.00037 0.027 15.7 0.5 3 23 519 540 519 540 0.96 8 13 5.7e-05 0.0042 18.3 0.2 1 23 553 575 553 575 0.98 9 13 8.6e-05 0.0063 17.7 0.6 1 22 581 602 581 606 0.94 10 13 0.0037 0.28 12.6 6.2 1 23 614 637 614 637 0.96 11 13 0.07 5.2 8.6 0.9 1 23 643 666 643 666 0.91 12 13 0.00035 0.026 15.8 0.1 1 23 675 697 675 697 0.98 13 13 0.00054 0.04 15.2 1.5 1 23 703 726 703 726 0.95
Sequence Information
- Coding Sequence
- ATGATAAGACATGCAAACAACCAATTAATGTATAATTTAGTGTCAACACCTGACCCCTATGAAAagtatataaaagaaaattctgATGTAAACCGAAAAACAGACTCAGAAGAAACAGTAAATAGAATCACAGTTAAAATTGAACGCATTGATGATTCTCATTTAGTAGATGAAGACAGGGAAATAATTGATGAACAGAATGCAGAGTGTGGAAAAGTAGAAATTACACTGGATCCGTTAGAGTATGAAAGTACTACATTCGCGAGCACAGTTTGTCATGAAGAGTTTCCTCACCAGCATGGGTACGGTGCACAGTTAGGCATGCAACTGCAAGGCGGCGCGCTCCTTGATGCACCCTCAACTCACAATGTTGtGCCTCCAATATTCGCGAAATGTATCACGACTACCGGACACGAAGCGCTCACGACTGAAAAATCTGATGCTAGAGAGAACGAGCGAGCATTTATAACTAACAGCGGCGCATCAGACAACCAAGCACCAGACAGAATAAATACTGACATCAAGAGCAGTGTCGTCAACtatatttcaaaaaaccctCAAAACGCAAATATAAAGGTTGAATTGTCGATGCAATCACTACAAGCTACCACTTCTTGTGACAGTCTGAATGTTCACACTGCTTATAAAGATGCCCAGGATGTTCCAAAGATTGAGGATGTAGTTGCTACAGCACACAACAAGCCTGATGCACCAATGCTGAGTGAAACTGAACCTGGCACATCAGGGAATAGTTCCGGCATACATACATTCACTTGTGATTTCTGTCAACGCGCATTTACCCGAAAATGTTACTTGGTTATGCATATGATGACCCACACTGGCAAAAAGCCGTATTCCTGTGAGCTATGCAGTTACAAATGTGCATCAAAAGGTAATTTATTACACCATATGAAGACACACACGGGCGAAAAGCCTTATCCCTATAACCATGAAAACCTTAAAGATGAAGATAGTCTGTCAGATTCAAAGGAAGAGCACAAAAAGACTGAGCGGAATAAATTAAAACGCAAGAAAGTGCTAAAGAAAGGCAGCGTGAAGAGTCTCAAGAAGAAACGGCCATTTCAGAAAAAGGGAGGGATAAAAGACAAAAAAGATCCCTTCATAATAGTTATACAGTTAACAAAGGAAGAGTGTTTAGAAGAAAGAAGGAAGATGCAAGCCGACCCAAAATACAAGAATGCAATATACAAGTGTGGGGATTGTATTAAAGGATTTAATTTTAAGGAAAAGTATGACAGACATATGGAAGCACATAGTAAGGTAATGGGTGAGTATGTATGTGATATATGCAAACGTAGAATGGATAGCATGGAAAAATTGGTCGGTCACAAGAAATACCATGAAGTACGCTACAAGTGCAGTGAGTGTGGGATGACCCGTCTTAATAGGATGACTGTAAAGGAACACTACACAGCTTTTCATGAAAACAACGCTTTCTTACACAAATGTACGCATTGCGACAAAATGTTCAATCGACAAAGGGCGCTCAAGAAGCACTTGTCGAACGTACACAGAAGCAAGGAAAGGCTCGGATGTAAATACTGTGACAAAACTTTAGCGAATAAGGACGCCCTTAACAATCATGTGATGCTAAAACACCCAACAGAGCTGTCGGAGCACGCCTCAGTGATGCACTACACGTGCGCGGAGTGCGGGGCGGGGTTCAAGATGGCCTCGCAGCTCAAGTACCACATGGTGAAACACTCCGACCAGAAGGACTTCTACTGCGTGGAGTGTGACAGGGGTTTCAAGTCGAACTGGGCGTTGAAGCACCACCTCAAGACTGCTTCTCCACACGTCAACCCGTTAGAACTCAAGCATTGCTGTGAACATTGCGATAAAAGATTCGCTCTGGGAAGAGAACTGGAGCGGCACATGAACAGGTTTCATCTCAACCGCAAACCTTATAAGTGCGATAAGTGCGACAAAgCTTACCTGGCGTTGTGGTCGCTAAATCAACACAAGCGTTTCTCCCACGAGGGCCACAAACGGCCCCTGAAATACCCCTGTCCGATGTGCGATAAAGCATTCGCCGGCAGCGCCGCGCGTAAGTCACACATATTCACGCACACAAACGAAAGACCATTCCACTGCGACCAGTGCCCGGCGACCTTCAACCAGTCCAGCGCGCTGGCCACGCACGTCAAACATGTGCACCTCCGCCTGGCGAGAGACCGACAGCCCGAGCGCACCACCAGCGGCCTGTAG
- Protein Sequence
- MIRHANNQLMYNLVSTPDPYEKYIKENSDVNRKTDSEETVNRITVKIERIDDSHLVDEDREIIDEQNAECGKVEITLDPLEYESTTFASTVCHEEFPHQHGYGAQLGMQLQGGALLDAPSTHNVVPPIFAKCITTTGHEALTTEKSDARENERAFITNSGASDNQAPDRINTDIKSSVVNYISKNPQNANIKVELSMQSLQATTSCDSLNVHTAYKDAQDVPKIEDVVATAHNKPDAPMLSETEPGTSGNSSGIHTFTCDFCQRAFTRKCYLVMHMMTHTGKKPYSCELCSYKCASKGNLLHHMKTHTGEKPYPYNHENLKDEDSLSDSKEEHKKTERNKLKRKKVLKKGSVKSLKKKRPFQKKGGIKDKKDPFIIVIQLTKEECLEERRKMQADPKYKNAIYKCGDCIKGFNFKEKYDRHMEAHSKVMGEYVCDICKRRMDSMEKLVGHKKYHEVRYKCSECGMTRLNRMTVKEHYTAFHENNAFLHKCTHCDKMFNRQRALKKHLSNVHRSKERLGCKYCDKTLANKDALNNHVMLKHPTELSEHASVMHYTCAECGAGFKMASQLKYHMVKHSDQKDFYCVECDRGFKSNWALKHHLKTASPHVNPLELKHCCEHCDKRFALGRELERHMNRFHLNRKPYKCDKCDKAYLALWSLNQHKRFSHEGHKRPLKYPCPMCDKAFAGSAARKSHIFTHTNERPFHCDQCPATFNQSSALATHVKHVHLRLARDRQPERTTSGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -